Wall clock time and date at job start Tue Mar 31 2020 11:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47261 * 179.59885 * 3 2 1 5 5 C 1.50699 * 109.47315 * 299.60460 * 3 2 1 6 6 H 1.07999 * 120.00636 * 119.99548 * 5 3 2 7 7 C 1.37877 * 119.99761 * 300.00171 * 5 3 2 8 8 N 1.31516 * 119.99954 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47141 * 60.00133 * 9 7 5 11 11 H 1.48508 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47301 * 299.99873 * 9 7 5 13 13 N 1.46906 * 109.47240 * 59.60082 * 3 2 1 14 14 C 1.46903 * 110.99762 * 85.76081 * 13 3 2 15 15 C 1.52998 * 109.45651 * 206.94363 * 14 13 3 16 16 C 1.53079 * 109.42076 * 179.61049 * 15 14 13 17 17 C 1.52597 * 109.48709 * 59.32458 * 16 15 14 18 18 C 1.53966 * 109.97020 * 179.35360 * 17 16 15 19 19 C 1.54429 * 102.27910 * 267.14373 * 18 17 16 20 20 C 1.51404 * 105.20688 * 333.99821 * 19 18 17 21 21 C 1.38472 * 130.39390 * 197.27986 * 20 19 18 22 22 C 1.38100 * 120.24317 * 180.18903 * 21 20 19 23 23 C 1.38249 * 119.92739 * 359.43748 * 22 21 20 24 24 C 1.38095 * 119.93758 * 0.29594 * 23 22 21 25 25 C 1.38316 * 109.76391 * 16.96490 * 20 19 18 26 26 C 1.52555 * 110.53986 * 301.02965 * 17 16 15 27 27 C 1.52997 * 109.45924 * 86.85678 * 14 13 3 28 28 H 1.08995 * 109.47067 * 56.31576 * 1 2 3 29 29 H 1.08997 * 109.47128 * 176.31705 * 1 2 3 30 30 H 1.08999 * 109.47135 * 296.31611 * 1 2 3 31 31 H 1.08992 * 109.47082 * 239.99958 * 2 1 3 32 32 H 1.09005 * 109.46697 * 119.99524 * 2 1 3 33 33 H 0.97009 * 119.99985 * 179.97438 * 8 7 5 34 34 H 1.00895 * 110.99910 * 209.71220 * 13 3 2 35 35 H 1.09004 * 109.45478 * 326.90764 * 14 13 3 36 36 H 1.09000 * 109.47770 * 59.63003 * 15 14 13 37 37 H 1.08998 * 109.48834 * 299.59937 * 15 14 13 38 38 H 1.08994 * 109.47290 * 299.31893 * 16 15 14 39 39 H 1.09001 * 109.46810 * 179.32678 * 16 15 14 40 40 H 1.09002 * 110.84007 * 148.94278 * 18 17 16 41 41 H 1.09007 * 111.01305 * 25.41966 * 18 17 16 42 42 H 1.09001 * 110.29233 * 215.06416 * 19 18 17 43 43 H 1.09003 * 110.29808 * 92.92911 * 19 18 17 44 44 H 1.08004 * 119.87840 * 359.91603 * 21 20 19 45 45 H 1.07998 * 120.03532 * 179.70538 * 22 21 20 46 46 H 1.07995 * 120.03325 * 180.31275 * 23 22 21 47 47 H 1.07993 * 119.88013 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.46016 * 178.95045 * 26 17 16 49 49 H 1.09000 * 109.46521 * 298.92838 * 26 17 16 50 50 H 1.09000 * 109.47754 * 300.34921 * 27 14 13 51 51 H 1.09009 * 109.47367 * 60.35922 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0072 5 6 1.5457 2.1501 -1.2353 6 1 0.9242 3.0284 -1.1424 7 6 1.8870 1.6761 -2.4843 8 7 2.6442 0.6068 -2.5975 9 14 1.2737 2.5528 -4.0156 10 1 1.7682 3.9530 -4.0158 11 1 1.7772 1.8503 -5.2232 12 1 -0.2112 2.5522 -4.0251 13 7 1.5425 2.1378 1.1946 14 6 2.4284 1.9093 2.3439 15 6 1.6238 2.0299 3.6396 16 6 2.5457 1.7821 4.8363 17 6 3.6781 2.8049 4.8269 18 6 4.6036 2.5758 6.0358 19 6 4.0016 3.5248 7.0949 20 6 3.3107 4.6154 6.3040 21 6 2.8838 5.8736 6.6941 22 6 2.2640 6.7101 5.7868 23 6 2.0788 6.2953 4.4810 24 6 2.5085 5.0431 4.0882 25 6 3.1250 4.1998 4.9979 26 6 4.4773 2.7067 3.5312 27 6 3.5493 2.9507 2.3384 28 1 -0.3633 0.5699 -0.8551 29 1 -0.3633 -1.0255 -0.0660 30 1 -0.3633 0.4556 0.9211 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8840 0.2731 -3.4763 34 1 1.4276 3.1244 1.0172 35 1 2.8605 0.9108 2.2764 36 1 0.8219 1.2916 3.6395 37 1 1.1968 3.0303 3.7107 38 1 2.9631 0.7774 4.7714 39 1 1.9757 1.8796 5.7603 40 1 5.6289 2.8598 5.7985 41 1 4.5579 1.5400 6.3723 42 1 4.7914 3.9495 7.7145 43 1 3.2799 2.9916 7.7138 44 1 3.0323 6.2003 7.7127 45 1 1.9281 7.6889 6.0958 46 1 1.5988 6.9500 3.7688 47 1 2.3637 4.7202 3.0679 48 1 5.2687 3.4562 3.5350 49 1 4.9184 1.7132 3.4509 50 1 4.1182 2.8674 1.4123 51 1 3.1181 3.9492 2.4115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173688334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:25 Heat of formation + Delta-G solvation = 0.502069 kcal Electronic energy + Delta-G solvation = -27352.183928 eV Core-core repulsion = 24021.575125 eV Total energy + Delta-G solvation = -3330.608803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03980 -39.13205 -37.55311 -35.91503 -33.89282 -32.50030 -31.84920 -31.12959 -30.07002 -29.01629 -27.46102 -25.19738 -24.28741 -23.61061 -23.58470 -22.30982 -21.30324 -20.56971 -20.12060 -18.34159 -17.07416 -16.81185 -16.46447 -16.14819 -15.90254 -15.78063 -15.63822 -15.19847 -14.82653 -14.68266 -14.25726 -14.01639 -13.84802 -13.75425 -13.55878 -13.44524 -13.21063 -13.08793 -12.94274 -12.79525 -12.51898 -12.44770 -12.40424 -12.16407 -12.11183 -12.00220 -11.74932 -11.65228 -11.51898 -11.33165 -11.14766 -10.97486 -10.74242 -10.63078 -10.50238 -9.63043 -9.33471 -8.85463 -8.08059 -6.19858 0.53017 0.55770 1.41820 1.42978 1.50043 2.42924 2.91882 3.20443 3.49183 3.53434 3.71802 3.87229 3.87990 4.09632 4.22014 4.23124 4.33843 4.35057 4.44523 4.46328 4.55979 4.65470 4.66402 4.69944 4.78250 4.80246 4.82041 4.86649 4.92057 4.98143 5.01443 5.03016 5.14078 5.19838 5.22131 5.26549 5.32535 5.34624 5.36134 5.41418 5.43949 5.51330 5.56141 5.63124 5.66272 5.73636 5.75646 5.85800 5.86975 5.94374 6.20350 6.30926 6.57179 6.87411 7.09477 7.48996 8.96715 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003602 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.841588 B = 7771.303593 C = 8416.596844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.037 1.037 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.097 3.903 15 C -0.098 4.098 16 C -0.094 4.094 17 C -0.014 4.014 18 C -0.111 4.111 19 C -0.075 4.075 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.085 4.085 26 C -0.094 4.094 27 C -0.161 4.161 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.030 0.970 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 7.502 20.997 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.020 1.020 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.305 5.305 14 C -0.013 4.013 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.014 4.014 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.085 4.085 26 C -0.132 4.132 27 C -0.199 4.199 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.148 0.852 47 H 0.143 0.857 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.049 0.951 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.020 6.860 21.018 22.202 hybrid contribution 0.600 0.813 -1.885 2.138 sum 2.620 7.674 19.134 20.781 Atomic orbital electron populations 1.21289 0.96010 0.98186 1.00808 1.21315 0.96228 0.97984 0.98159 1.18834 0.90538 0.91860 0.86913 1.01988 1.21443 1.31234 1.11896 0.91488 0.92644 1.25602 0.95269 0.95641 1.01650 1.70019 1.37645 1.23936 1.24051 0.85717 0.78812 0.78676 0.79056 1.19852 1.21230 1.19706 1.60726 1.49314 1.15126 1.05334 1.21477 0.91290 0.96973 0.91607 1.21456 0.97653 1.01689 0.92796 1.21442 0.95761 0.98075 0.97881 1.19826 0.95025 0.91196 0.95376 1.22404 0.98384 1.00750 0.93299 1.21075 0.99448 0.93523 0.97181 1.20960 0.99419 0.95477 0.95163 1.20885 0.99121 0.92994 1.00539 1.21306 0.99433 1.00545 0.93210 1.21314 1.00611 0.96149 0.97222 1.21385 0.99227 0.94490 0.99933 1.20493 0.98263 0.95448 0.94284 1.21402 0.97105 1.01476 0.93204 1.22679 0.98283 1.01357 0.97623 0.94665 0.95045 0.92922 0.92570 0.96548 0.93125 0.85537 0.93585 0.92534 0.92158 0.91203 0.90906 0.90681 0.89021 0.89452 0.89316 0.84394 0.84012 0.85172 0.85670 0.92143 0.91910 0.95080 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.52 71.98 0.69 -4.07 16 2 C -0.10 -4.88 5.57 30.59 0.17 -4.71 16 3 C 0.23 11.48 2.10 44.17 0.09 11.57 16 4 H -0.04 -2.14 7.25 -2.39 -0.02 -2.16 16 5 C -0.52 -28.34 7.28 25.60 0.19 -28.15 16 6 H 0.06 2.96 7.61 -2.91 -0.02 2.94 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 9 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 N -0.68 -28.25 5.35 -473.30 -2.53 -30.78 16 14 C 0.10 3.42 2.26 44.91 0.10 3.52 16 15 C -0.10 -2.88 5.24 30.62 0.16 -2.72 16 16 C -0.09 -2.21 4.61 30.49 0.14 -2.07 16 17 C -0.01 -0.32 0.55 -52.78 -0.03 -0.35 16 18 C -0.11 -1.91 6.08 31.41 0.19 -1.72 16 19 C -0.08 -1.18 6.76 30.56 0.21 -0.98 16 20 C -0.11 -2.29 6.14 -19.57 -0.12 -2.41 16 21 C -0.12 -2.22 10.04 22.29 0.22 -2.00 16 22 C -0.13 -2.46 10.05 22.24 0.22 -2.24 16 23 C -0.14 -3.07 10.05 22.24 0.22 -2.85 16 24 C -0.13 -3.46 7.59 22.30 0.17 -3.29 16 25 C -0.08 -2.05 4.46 -19.68 -0.09 -2.14 16 26 C -0.09 -2.50 4.62 30.47 0.14 -2.36 16 27 C -0.16 -5.29 4.85 30.62 0.15 -5.14 16 28 H 0.03 1.70 7.10 -2.39 -0.02 1.69 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 2.23 7.71 -2.39 -0.02 2.21 16 31 H 0.06 3.13 6.06 -2.39 -0.01 3.12 16 32 H 0.02 0.75 7.51 -2.38 -0.02 0.73 16 33 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 34 H 0.33 13.63 7.92 -89.70 -0.71 12.92 16 35 H 0.05 1.81 7.17 -2.38 -0.02 1.79 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.80 5.91 -2.39 -0.01 1.79 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.25 7.90 -2.39 -0.02 1.24 16 41 H 0.09 1.32 7.89 -2.38 -0.02 1.30 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.13 3.56 4.28 -2.91 -0.01 3.55 16 48 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 51 H 0.09 2.72 3.65 -2.38 -0.01 2.71 16 Total: -1.00 -60.54 373.74 3.21 -57.33 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.20 Total: 31.18 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 3.28 Total: -50.67 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.29 Total: -83.66 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.54 3.21 -57.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173688334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.830 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds