Wall clock time and date at job start Tue Mar 31 2020 11:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46711 * 2 1 4 4 C 1.46892 * 111.00297 * 72.99712 * 3 2 1 5 5 C 1.50705 * 109.47077 * 285.51708 * 4 3 2 6 6 H 1.07998 * 119.99766 * 358.18605 * 5 4 3 7 7 C 1.37880 * 120.00191 * 178.19044 * 5 4 3 8 8 N 1.31510 * 119.99561 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99844 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47300 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47318 * 119.99844 * 9 7 5 12 12 H 1.48506 * 109.47103 * 239.99719 * 9 7 5 13 13 C 1.46908 * 110.99523 * 196.95187 * 3 2 1 14 14 C 1.53007 * 109.47355 * 66.04311 * 13 3 2 15 15 C 1.53088 * 109.45601 * 179.57415 * 14 13 3 16 16 C 1.52582 * 109.49950 * 59.35020 * 15 14 13 17 17 C 1.53982 * 110.01421 * 179.57796 * 16 15 14 18 18 C 1.54420 * 102.25699 * 266.93134 * 17 16 15 19 19 C 1.51398 * 105.24011 * 334.02533 * 18 17 16 20 20 C 1.38481 * 130.39390 * 197.13038 * 19 18 17 21 21 C 1.38102 * 120.24048 * 180.33314 * 20 19 18 22 22 C 1.38256 * 119.91688 * 359.54350 * 21 20 19 23 23 C 1.38092 * 119.95005 * 0.22864 * 22 21 20 24 24 C 1.38311 * 109.74930 * 16.99850 * 19 18 17 25 25 C 1.52555 * 110.53158 * 301.14677 * 16 15 14 26 26 C 1.53016 * 109.46602 * 306.04239 * 13 3 2 27 27 H 1.08999 * 109.47527 * 48.79367 * 1 2 3 28 28 H 1.09000 * 109.47195 * 168.79521 * 1 2 3 29 29 H 1.09003 * 109.47226 * 288.78740 * 1 2 3 30 30 H 1.08998 * 109.47118 * 240.00153 * 2 1 3 31 31 H 1.08997 * 109.47410 * 119.99897 * 2 1 3 32 32 H 1.08999 * 109.47209 * 45.51165 * 4 3 2 33 33 H 1.08997 * 109.47786 * 165.51801 * 4 3 2 34 34 H 0.97008 * 119.99510 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46703 * 186.04595 * 13 3 2 36 36 H 1.09001 * 109.47259 * 59.58649 * 14 13 3 37 37 H 1.08997 * 109.48023 * 299.57336 * 14 13 3 38 38 H 1.08993 * 109.47201 * 299.33820 * 15 14 13 39 39 H 1.09003 * 109.46624 * 179.35381 * 15 14 13 40 40 H 1.08994 * 110.84064 * 148.74295 * 17 16 15 41 41 H 1.08995 * 111.02314 * 25.20655 * 17 16 15 42 42 H 1.09003 * 110.28649 * 215.08659 * 18 17 16 43 43 H 1.08991 * 110.28721 * 92.97211 * 18 17 16 44 44 H 1.07994 * 119.87651 * 0.11930 * 20 19 18 45 45 H 1.08003 * 120.04050 * 179.81128 * 21 20 19 46 46 H 1.07999 * 120.02305 * 180.25688 * 22 21 20 47 47 H 1.07997 * 119.87936 * 179.97438 * 23 22 21 48 48 H 1.08993 * 109.45606 * 178.88449 * 25 16 15 49 49 H 1.09006 * 109.44771 * 298.81876 * 25 16 15 50 50 H 1.08999 * 109.47898 * 300.35551 * 26 13 3 51 51 H 1.08998 * 109.47637 * 60.37680 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8170 2.0151 1.3114 5 6 0.3575 2.3456 1.4898 6 1 -0.3442 2.1378 0.6955 7 6 -0.0820 2.9132 2.6670 8 7 0.7724 3.1658 3.6342 9 14 -1.8911 3.3221 2.8883 10 1 -2.6381 2.9424 1.6622 11 1 -2.4302 2.5700 4.0497 12 1 -2.0434 4.7797 3.1286 13 6 3.4320 1.4441 -0.3999 14 6 3.5670 1.0102 -1.8609 15 6 5.0375 1.0820 -2.2804 16 6 5.8677 0.1666 -1.3854 17 6 7.3485 0.2218 -1.8041 18 6 7.4543 -0.9609 -2.7913 19 6 6.3602 -1.9227 -2.3789 20 6 6.1796 -3.2611 -2.6848 21 6 5.0855 -3.9455 -2.1931 22 6 4.1717 -3.2952 -1.3847 23 6 4.3521 -1.9618 -1.0743 24 6 5.4464 -1.2719 -1.5698 25 6 5.7257 0.5760 0.0773 26 6 4.2531 0.5071 0.4885 27 1 -0.3634 0.6770 -0.7731 28 1 -0.3633 -1.0081 -0.1997 29 1 -0.3634 0.3310 0.9729 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.1326 1.3286 2.0970 33 1 2.4064 2.9300 1.3700 34 1 0.4633 3.5655 4.4623 35 1 3.7987 2.4645 -0.2885 36 1 2.9761 1.6732 -2.4930 37 1 3.2073 -0.0128 -1.9710 38 1 5.3939 2.1073 -2.1815 39 1 5.1354 0.7620 -3.3177 40 1 8.0005 0.0688 -0.9442 41 1 7.5794 1.1639 -2.3012 42 1 8.4301 -1.4391 -2.7051 43 1 7.2901 -0.6168 -3.8123 44 1 6.8951 -3.7707 -3.3131 45 1 4.9462 -4.9886 -2.4362 46 1 3.3177 -3.8299 -0.9958 47 1 3.6373 -1.4548 -0.4431 48 1 6.3091 -0.1004 0.7019 49 1 6.0913 1.5948 0.2062 50 1 4.1519 0.8123 1.5300 51 1 3.8906 -0.5143 0.3721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173689823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:55 Heat of formation + Delta-G solvation = 27.623608 kcal Electronic energy + Delta-G solvation = -27725.689009 eV Core-core repulsion = 24396.256285 eV Total energy + Delta-G solvation = -3329.432724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17443 -38.27653 -36.52604 -34.19200 -32.38043 -31.11793 -30.56826 -29.71814 -29.06225 -28.12186 -26.20383 -23.57407 -22.89030 -22.56749 -22.32319 -21.45295 -20.55908 -19.46342 -18.43311 -16.53220 -16.00880 -15.54772 -15.43155 -15.02531 -14.88020 -14.56118 -14.03167 -13.93094 -13.71837 -13.60622 -13.16148 -12.79201 -12.67232 -12.45667 -12.31689 -12.15327 -11.90251 -11.80460 -11.66184 -11.36826 -11.28708 -11.14961 -11.05338 -10.92389 -10.80858 -10.69136 -10.52716 -10.46634 -10.16653 -10.00925 -9.87009 -9.57583 -9.21419 -8.98843 -8.76004 -8.47921 -8.34521 -7.12803 -5.97237 -3.95415 1.38392 1.42641 3.32851 3.40806 3.45287 3.78033 4.34949 4.42846 4.47042 4.78236 4.85693 4.95760 5.01956 5.07431 5.12542 5.21648 5.35116 5.37260 5.45748 5.46465 5.52410 5.61081 5.62338 5.74082 5.75843 5.83044 5.88878 5.96576 5.98394 6.00945 6.06979 6.08194 6.21713 6.24374 6.28690 6.31395 6.39104 6.43006 6.48304 6.51530 6.60579 6.63737 6.72999 6.77336 6.87469 6.96217 7.04712 7.27506 7.42508 7.43527 7.91161 8.20069 8.30415 8.64591 9.11656 9.66362 11.13431 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.003681 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.216374 B = 7604.320933 C = 8256.740875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 N -0.530 5.530 4 C 0.194 3.806 5 C -0.501 4.501 6 H 0.074 0.926 7 C 0.052 3.948 8 N -0.901 5.901 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.089 3.911 14 C -0.114 4.114 15 C -0.098 4.098 16 C -0.018 4.018 17 C -0.114 4.114 18 C -0.080 4.080 19 C -0.103 4.103 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.068 4.068 25 C -0.099 4.099 26 C -0.173 4.173 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.021 0.979 32 H -0.006 1.006 33 H 0.023 0.977 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.144 0.856 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 -10.651 -12.461 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 N -0.253 5.253 4 C 0.068 3.932 5 C -0.540 4.540 6 H 0.092 0.908 7 C -0.149 4.149 8 N -0.541 5.541 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.212 1.212 13 C -0.021 4.021 14 C -0.152 4.152 15 C -0.136 4.136 16 C -0.018 4.018 17 C -0.151 4.151 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.131 4.131 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.068 4.068 25 C -0.137 4.137 26 C -0.211 4.211 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.012 0.988 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.161 0.839 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.796 -10.293 -12.626 20.715 hybrid contribution -0.477 -0.277 0.957 1.105 sum 12.319 -10.570 -11.669 19.991 Atomic orbital electron populations 1.22061 0.95343 0.98516 1.04627 1.21943 0.96458 0.90155 0.97974 1.62359 1.14049 1.15754 1.33165 1.19743 0.97291 0.93445 0.82683 1.21479 0.93513 1.38862 1.00149 0.90809 1.24998 0.97558 0.96166 0.96145 1.69975 1.33957 1.44337 1.05814 0.86538 0.85502 0.77980 0.78012 1.19606 1.21251 1.21166 1.21666 0.88972 0.98309 0.93114 1.21669 0.94885 1.01937 0.96688 1.21457 0.95523 0.98567 0.98041 1.19858 0.94325 0.91165 0.96459 1.22392 0.95633 0.98193 0.98907 1.21034 0.96673 0.94372 0.99573 1.20630 0.97382 0.93894 0.98379 1.20542 0.98242 0.93355 1.00953 1.20992 0.94938 0.99633 0.98764 1.21112 0.99400 0.94746 0.98743 1.21500 0.97864 0.94292 0.99949 1.20390 0.94512 0.95139 0.96713 1.21448 0.97306 1.01120 0.93841 1.22751 0.95128 1.02125 1.01085 0.92704 0.95259 0.89565 0.93058 0.96111 0.98797 0.95855 0.93184 0.90917 0.91435 0.91737 0.91500 0.92227 0.90960 0.90445 0.91131 0.90471 0.86764 0.86304 0.86055 0.83937 0.92451 0.91707 0.91542 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.50 37.16 0.32 -2.57 16 2 C 0.06 1.20 4.04 -3.82 -0.02 1.18 16 3 N -0.53 -11.08 4.43 -228.07 -1.01 -12.09 16 4 C 0.19 4.92 4.11 -4.98 -0.02 4.90 16 5 C -0.50 -13.71 7.08 -34.44 -0.24 -13.95 16 6 H 0.07 1.99 5.59 -52.49 -0.29 1.70 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.09 1.55 2.17 -67.70 -0.15 1.40 16 14 C -0.11 -1.70 4.87 -26.68 -0.13 -1.83 16 15 C -0.10 -1.21 4.61 -26.90 -0.12 -1.34 16 16 C -0.02 -0.22 0.55 -155.43 -0.09 -0.30 16 17 C -0.11 -1.12 6.09 -25.47 -0.16 -1.28 16 18 C -0.08 -0.75 6.76 -26.80 -0.18 -0.94 16 19 C -0.10 -1.20 6.14 -104.16 -0.64 -1.84 16 20 C -0.11 -1.23 10.04 -39.54 -0.40 -1.63 16 21 C -0.13 -1.37 10.05 -39.62 -0.40 -1.77 16 22 C -0.12 -1.48 10.04 -39.63 -0.40 -1.88 16 23 C -0.12 -1.61 7.59 -39.53 -0.30 -1.91 16 24 C -0.07 -0.87 4.47 -104.33 -0.47 -1.34 16 25 C -0.10 -1.33 4.60 -26.93 -0.12 -1.46 16 26 C -0.17 -2.80 4.22 -26.70 -0.11 -2.91 16 27 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.93 5.76 -51.93 -0.30 1.63 16 30 H 0.05 0.87 4.95 -51.93 -0.26 0.62 16 31 H 0.02 0.41 6.97 -51.93 -0.36 0.05 16 32 H -0.01 -0.16 7.16 -51.93 -0.37 -0.53 16 33 H 0.02 0.64 7.76 -51.93 -0.40 0.24 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.07 1.35 7.84 -51.93 -0.41 0.94 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.98 4.12 -51.93 -0.21 0.77 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 41 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 47 H 0.14 2.08 2.75 -52.49 -0.14 1.93 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 51 H 0.08 1.28 2.54 -51.93 -0.13 1.15 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -29.28 363.65 -11.79 -41.07 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.26 Total: 3.01 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -3.72 Total: -28.10 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.27 Total: -38.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.28 -11.79 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173689823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.695 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds