Wall clock time and date at job start Tue Mar 31 2020 11:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46711 * 2 1 4 4 C 1.46892 * 111.00297 * 72.99712 * 3 2 1 5 5 C 1.50705 * 109.47077 * 285.51708 * 4 3 2 6 6 H 1.07998 * 119.99766 * 358.18605 * 5 4 3 7 7 C 1.37880 * 120.00191 * 178.19044 * 5 4 3 8 8 N 1.31510 * 119.99561 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99844 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47300 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47318 * 119.99844 * 9 7 5 12 12 H 1.48506 * 109.47103 * 239.99719 * 9 7 5 13 13 C 1.46908 * 110.99523 * 196.95187 * 3 2 1 14 14 C 1.53007 * 109.47355 * 66.04311 * 13 3 2 15 15 C 1.53088 * 109.45601 * 179.57415 * 14 13 3 16 16 C 1.52582 * 109.49950 * 59.35020 * 15 14 13 17 17 C 1.53982 * 110.01421 * 179.57796 * 16 15 14 18 18 C 1.54420 * 102.25699 * 266.93134 * 17 16 15 19 19 C 1.51398 * 105.24011 * 334.02533 * 18 17 16 20 20 C 1.38481 * 130.39390 * 197.13038 * 19 18 17 21 21 C 1.38102 * 120.24048 * 180.33314 * 20 19 18 22 22 C 1.38256 * 119.91688 * 359.54350 * 21 20 19 23 23 C 1.38092 * 119.95005 * 0.22864 * 22 21 20 24 24 C 1.38311 * 109.74930 * 16.99850 * 19 18 17 25 25 C 1.52555 * 110.53158 * 301.14677 * 16 15 14 26 26 C 1.53016 * 109.46602 * 306.04239 * 13 3 2 27 27 H 1.08999 * 109.47527 * 48.79367 * 1 2 3 28 28 H 1.09000 * 109.47195 * 168.79521 * 1 2 3 29 29 H 1.09003 * 109.47226 * 288.78740 * 1 2 3 30 30 H 1.08998 * 109.47118 * 240.00153 * 2 1 3 31 31 H 1.08997 * 109.47410 * 119.99897 * 2 1 3 32 32 H 1.08999 * 109.47209 * 45.51165 * 4 3 2 33 33 H 1.08997 * 109.47786 * 165.51801 * 4 3 2 34 34 H 0.97008 * 119.99510 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46703 * 186.04595 * 13 3 2 36 36 H 1.09001 * 109.47259 * 59.58649 * 14 13 3 37 37 H 1.08997 * 109.48023 * 299.57336 * 14 13 3 38 38 H 1.08993 * 109.47201 * 299.33820 * 15 14 13 39 39 H 1.09003 * 109.46624 * 179.35381 * 15 14 13 40 40 H 1.08994 * 110.84064 * 148.74295 * 17 16 15 41 41 H 1.08995 * 111.02314 * 25.20655 * 17 16 15 42 42 H 1.09003 * 110.28649 * 215.08659 * 18 17 16 43 43 H 1.08991 * 110.28721 * 92.97211 * 18 17 16 44 44 H 1.07994 * 119.87651 * 0.11930 * 20 19 18 45 45 H 1.08003 * 120.04050 * 179.81128 * 21 20 19 46 46 H 1.07999 * 120.02305 * 180.25688 * 22 21 20 47 47 H 1.07997 * 119.87936 * 179.97438 * 23 22 21 48 48 H 1.08993 * 109.45606 * 178.88449 * 25 16 15 49 49 H 1.09006 * 109.44771 * 298.81876 * 25 16 15 50 50 H 1.08999 * 109.47898 * 300.35551 * 26 13 3 51 51 H 1.08998 * 109.47637 * 60.37680 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8170 2.0151 1.3114 5 6 0.3575 2.3456 1.4898 6 1 -0.3442 2.1378 0.6955 7 6 -0.0820 2.9132 2.6670 8 7 0.7724 3.1658 3.6342 9 14 -1.8911 3.3221 2.8883 10 1 -2.6381 2.9424 1.6622 11 1 -2.4302 2.5700 4.0497 12 1 -2.0434 4.7797 3.1286 13 6 3.4320 1.4441 -0.3999 14 6 3.5670 1.0102 -1.8609 15 6 5.0375 1.0820 -2.2804 16 6 5.8677 0.1666 -1.3854 17 6 7.3485 0.2218 -1.8041 18 6 7.4543 -0.9609 -2.7913 19 6 6.3602 -1.9227 -2.3789 20 6 6.1796 -3.2611 -2.6848 21 6 5.0855 -3.9455 -2.1931 22 6 4.1717 -3.2952 -1.3847 23 6 4.3521 -1.9618 -1.0743 24 6 5.4464 -1.2719 -1.5698 25 6 5.7257 0.5760 0.0773 26 6 4.2531 0.5071 0.4885 27 1 -0.3634 0.6770 -0.7731 28 1 -0.3633 -1.0081 -0.1997 29 1 -0.3634 0.3310 0.9729 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.1326 1.3286 2.0970 33 1 2.4064 2.9300 1.3700 34 1 0.4633 3.5655 4.4623 35 1 3.7987 2.4645 -0.2885 36 1 2.9761 1.6732 -2.4930 37 1 3.2073 -0.0128 -1.9710 38 1 5.3939 2.1073 -2.1815 39 1 5.1354 0.7620 -3.3177 40 1 8.0005 0.0688 -0.9442 41 1 7.5794 1.1639 -2.3012 42 1 8.4301 -1.4391 -2.7051 43 1 7.2901 -0.6168 -3.8123 44 1 6.8951 -3.7707 -3.3131 45 1 4.9462 -4.9886 -2.4362 46 1 3.3177 -3.8299 -0.9958 47 1 3.6373 -1.4548 -0.4431 48 1 6.3091 -0.1004 0.7019 49 1 6.0913 1.5948 0.2062 50 1 4.1519 0.8123 1.5300 51 1 3.8906 -0.5143 0.3721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173689823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:54 Heat of formation + Delta-G solvation = 13.494138 kcal Electronic energy + Delta-G solvation = -27726.301709 eV Core-core repulsion = 24396.256285 eV Total energy + Delta-G solvation = -3330.045424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17690 -39.60631 -37.65562 -35.51245 -34.32910 -32.25593 -31.81916 -30.88916 -30.31965 -29.45421 -27.82937 -24.87251 -24.31814 -23.73483 -23.55041 -22.77748 -21.63219 -20.63379 -19.73419 -18.52723 -17.16268 -16.79777 -16.47167 -16.39499 -16.05539 -15.86565 -15.53124 -15.31527 -15.05098 -14.87291 -14.34634 -14.11915 -13.80920 -13.68821 -13.53661 -13.32651 -13.24365 -13.08465 -13.01973 -12.90124 -12.72312 -12.56506 -12.43222 -12.28683 -12.20022 -12.02892 -11.90842 -11.82890 -11.66472 -11.28754 -11.15646 -11.02942 -10.90165 -10.64846 -10.51791 -9.65239 -9.34791 -8.89644 -8.14559 -6.20652 0.51511 0.53528 1.40175 1.41269 1.54334 2.42312 2.89975 3.17171 3.29392 3.51799 3.57685 3.81300 3.83453 4.04477 4.15546 4.20347 4.25533 4.30458 4.31276 4.38610 4.44646 4.50885 4.56546 4.63363 4.68268 4.76004 4.76822 4.79943 4.84358 4.87578 4.94823 5.02483 5.06949 5.09926 5.15377 5.18321 5.22213 5.24547 5.27294 5.31109 5.32648 5.39797 5.41550 5.49183 5.54465 5.64534 5.68632 5.73311 5.76277 5.85124 6.15502 6.18766 6.46638 6.74350 6.94450 7.46120 8.96313 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.003681 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.216374 B = 7604.320933 C = 8256.740875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 N -0.536 5.536 4 C 0.214 3.786 5 C -0.509 4.509 6 H 0.078 0.922 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.088 3.912 14 C -0.104 4.104 15 C -0.092 4.092 16 C -0.016 4.016 17 C -0.110 4.110 18 C -0.075 4.075 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.086 4.086 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.008 0.992 32 H -0.038 1.038 33 H -0.008 1.008 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.028 0.972 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.899 -12.036 -15.062 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 N -0.259 5.259 4 C 0.088 3.912 5 C -0.547 4.547 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.021 4.021 14 C -0.142 4.142 15 C -0.130 4.130 16 C -0.016 4.016 17 C -0.147 4.147 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.086 4.086 25 C -0.132 4.132 26 C -0.204 4.204 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.026 0.974 32 H -0.020 1.020 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.148 0.852 47 H 0.141 0.859 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.046 0.954 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.616 -11.688 -15.249 23.549 hybrid contribution -0.699 0.083 1.762 1.897 sum 12.918 -11.605 -13.487 21.987 Atomic orbital electron populations 1.21962 0.95290 1.00291 1.02510 1.21952 0.96430 0.89050 0.98584 1.62313 1.16711 1.16886 1.30014 1.19331 0.96074 0.91648 0.84197 1.21797 0.94281 1.38353 1.00306 0.90421 1.25882 1.02183 0.96071 0.95848 1.70116 1.36197 1.45385 1.06409 0.85451 0.79961 0.77676 0.78296 1.18419 1.20755 1.20793 1.21723 0.87146 0.97839 0.95357 1.21571 0.97152 1.01402 0.94038 1.21436 0.93356 0.99297 0.98932 1.19852 0.96158 0.90840 0.94718 1.22399 0.93478 0.99453 0.99393 1.21076 0.96715 0.93538 0.99880 1.20967 0.97541 0.94535 0.97781 1.20901 0.98523 0.93239 1.00728 1.21312 0.94419 1.00795 0.97811 1.21306 1.00302 0.94410 0.99295 1.21439 0.98288 0.95184 1.00797 1.20509 0.94908 0.95566 0.97649 1.21408 0.94806 1.01404 0.95570 1.22651 0.97412 1.01879 0.98492 0.93112 0.91968 0.92759 0.90397 0.97384 1.02020 0.99023 0.93091 0.92653 0.91935 0.91845 0.90737 0.90514 0.90708 0.88787 0.89411 0.89142 0.84244 0.83899 0.85243 0.85889 0.92235 0.91530 0.95356 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 8.50 71.98 0.61 -4.97 16 2 C 0.07 2.64 4.04 86.30 0.35 2.99 16 3 N -0.54 -23.44 4.43 -875.47 -3.88 -27.31 16 4 C 0.21 11.60 4.11 85.56 0.35 11.95 16 5 C -0.51 -28.85 7.08 25.60 0.18 -28.67 16 6 H 0.08 4.27 5.59 -2.91 -0.02 4.25 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.09 3.22 2.17 44.92 0.10 3.31 16 14 C -0.10 -3.05 4.87 30.63 0.15 -2.91 16 15 C -0.09 -2.12 4.61 30.48 0.14 -1.98 16 16 C -0.02 -0.35 0.55 -52.78 -0.03 -0.38 16 17 C -0.11 -1.84 6.09 31.41 0.19 -1.65 16 18 C -0.08 -1.14 6.76 30.55 0.21 -0.94 16 19 C -0.11 -2.22 6.14 -19.57 -0.12 -2.34 16 20 C -0.12 -2.16 10.04 22.30 0.22 -1.93 16 21 C -0.13 -2.41 10.05 22.24 0.22 -2.19 16 22 C -0.14 -3.10 10.04 22.24 0.22 -2.88 16 23 C -0.14 -3.71 7.59 22.30 0.17 -3.54 16 24 C -0.09 -2.10 4.47 -19.67 -0.09 -2.18 16 25 C -0.09 -2.55 4.60 30.46 0.14 -2.41 16 26 C -0.17 -5.72 4.22 30.62 0.13 -5.59 16 27 H 0.05 2.00 7.77 -2.39 -0.02 1.98 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.47 5.76 -2.39 -0.01 2.45 16 30 H 0.08 2.64 4.95 -2.39 -0.01 2.63 16 31 H 0.01 0.33 6.97 -2.39 -0.02 0.32 16 32 H -0.04 -2.26 7.16 -2.39 -0.02 -2.28 16 33 H -0.01 -0.50 7.76 -2.39 -0.02 -0.52 16 34 H 0.26 15.10 8.31 -92.70 -0.77 14.32 16 35 H 0.06 2.18 7.84 -2.39 -0.02 2.16 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.89 4.12 -2.39 -0.01 1.88 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.23 7.89 -2.39 -0.02 1.21 16 41 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 46 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 47 H 0.12 3.66 2.75 -2.91 -0.01 3.65 16 48 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.03 1.15 7.11 -2.39 -0.02 1.13 16 51 H 0.09 2.87 2.54 -2.39 -0.01 2.87 16 Total: -1.00 -65.96 363.65 2.96 -63.00 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.91 Total: 20.73 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.61 Total: -46.01 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.59 Total: -84.76 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.96 2.96 -63.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173689823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.491 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds