Wall clock time and date at job start Tue Mar 31 2020 11:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47014 * 110.99938 * 2 1 4 4 C 1.53096 * 109.25943 * 182.39312 * 3 2 1 5 5 O 1.43018 * 109.25582 * 303.15005 * 4 3 2 6 6 C 1.43008 * 113.73798 * 58.67354 * 5 4 3 7 7 C 1.47020 * 111.00222 * 123.63354 * 2 1 3 8 8 H 1.09003 * 109.50282 * 297.54360 * 7 2 1 9 9 C 1.50696 * 109.50456 * 57.67437 * 7 2 1 10 10 O 1.21281 * 120.00326 * 28.00687 * 9 7 2 11 11 N 1.34783 * 119.99770 * 208.01092 * 9 7 2 12 12 C 1.46496 * 119.99847 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47310 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47670 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47670 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.47185 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47157 * 179.97438 * 17 16 15 19 19 C 1.36940 * 120.00013 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99606 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00111 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99714 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99973 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46954 * 89.99983 * 23 21 19 25 25 H 1.48496 * 109.47131 * 209.99962 * 23 21 19 26 26 H 1.48499 * 109.47096 * 330.00214 * 23 21 19 27 27 H 1.08998 * 109.47102 * 54.82564 * 1 2 3 28 28 H 1.09008 * 109.46958 * 174.82511 * 1 2 3 29 29 H 1.09005 * 109.47103 * 294.82098 * 1 2 3 30 30 H 1.08997 * 109.50977 * 62.45826 * 3 2 1 31 31 H 1.09002 * 109.50604 * 302.32461 * 3 2 1 32 32 H 1.08999 * 109.50852 * 183.21379 * 4 3 2 33 33 H 1.09005 * 109.54436 * 63.10377 * 4 3 2 34 34 H 1.08997 * 109.51161 * 61.26581 * 6 5 4 35 35 H 1.09002 * 109.50585 * 181.39571 * 6 5 4 36 36 H 0.96995 * 119.99516 * 359.97438 * 11 9 7 37 37 H 1.08998 * 109.47405 * 300.00045 * 12 11 9 38 38 H 1.09002 * 109.47032 * 60.00414 * 12 11 9 39 39 H 1.08998 * 109.47148 * 300.00478 * 13 12 11 40 40 H 1.09005 * 109.47131 * 59.99970 * 13 12 11 41 41 H 1.08998 * 109.47208 * 300.00421 * 14 13 12 42 42 H 1.09005 * 109.46885 * 59.99799 * 14 13 12 43 43 H 1.08998 * 109.47148 * 300.00458 * 15 14 13 44 44 H 1.08997 * 109.46837 * 60.00023 * 15 14 13 45 45 H 1.08997 * 109.47184 * 299.99679 * 16 15 14 46 46 H 1.08997 * 109.47281 * 60.00120 * 16 15 14 47 47 H 1.08998 * 109.47082 * 300.00148 * 17 16 15 48 48 H 1.09002 * 109.46729 * 60.00133 * 17 16 15 49 49 H 0.97004 * 120.00435 * 0.02562 * 18 17 16 50 50 H 0.97005 * 120.00082 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0174 0.5575 1.0403 6 6 3.5250 -0.7848 1.0709 7 6 1.9959 -0.7602 1.1428 8 1 1.6828 -0.2842 2.0720 9 6 1.4671 -2.1706 1.0957 10 8 1.1756 -2.6737 0.0314 11 7 1.3181 -2.8728 2.2364 12 6 0.8035 -4.2437 2.1907 13 6 0.7334 -4.8097 3.6104 14 6 0.1966 -6.2416 3.5627 15 6 0.1270 -6.8079 4.9823 16 6 -0.4092 -8.2400 4.9345 17 6 -0.4793 -8.8060 6.3543 18 7 -0.9933 -10.1771 6.3085 19 6 -1.1436 -10.8910 7.4674 20 1 -0.8828 -10.4433 8.4151 21 6 -1.6302 -12.1903 7.4240 22 7 -1.7751 -12.8763 8.5379 23 14 -2.0806 -12.9648 5.7848 24 1 -0.8929 -13.6550 5.2206 25 1 -3.1753 -13.9477 5.9860 26 1 -2.5314 -11.9071 4.8449 27 1 -0.3633 0.5920 -0.8400 28 1 -0.3633 -1.0236 -0.0927 29 1 -0.3633 0.4314 0.9328 30 1 1.6828 1.8826 0.9110 31 1 1.6133 1.9092 -0.8682 32 1 3.9221 2.3399 -0.0030 33 1 3.8392 0.8648 -0.9964 34 1 3.8386 -1.3083 0.1678 35 1 3.9222 -1.2983 1.9465 36 1 1.5516 -2.4705 3.0875 37 1 -0.1932 -4.2431 1.7497 38 1 1.4680 -4.8612 1.5863 39 1 1.7303 -4.8103 4.0510 40 1 0.0692 -4.1923 4.2153 41 1 -0.8003 -6.2414 3.1219 42 1 0.8611 -6.8587 2.9579 43 1 1.1241 -6.8081 5.4227 44 1 -0.5372 -6.1909 5.5874 45 1 -1.4062 -8.2401 4.4941 46 1 0.2554 -8.8567 4.3295 47 1 0.5175 -8.8058 6.7952 48 1 -1.1442 -8.1891 6.9589 49 1 -1.2265 -10.5795 5.4573 50 1 -2.1147 -13.7844 8.5076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178250077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:47 Heat of formation + Delta-G solvation = -77.636747 kcal Electronic energy + Delta-G solvation = -25313.435559 eV Core-core repulsion = 21568.589140 eV Total energy + Delta-G solvation = -3744.846419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98671 -39.18398 -37.00738 -36.16039 -35.50618 -34.10425 -32.42479 -31.71553 -30.36885 -29.35828 -27.34148 -25.36887 -24.77490 -23.94114 -22.19812 -21.74359 -21.12578 -20.86010 -20.31739 -17.88180 -17.45960 -17.12622 -16.95582 -16.33175 -16.25951 -15.65719 -15.37141 -15.12501 -14.91389 -14.54555 -14.40476 -14.25961 -13.94289 -13.48856 -13.26047 -13.22128 -12.88258 -12.71791 -12.71544 -12.44512 -12.25044 -11.87728 -11.78346 -11.64375 -11.48474 -11.30281 -11.03227 -10.87685 -10.80253 -10.54429 -10.38557 -10.34420 -10.10276 -9.98577 -9.57042 -9.50234 -8.99739 -8.87124 -7.20442 -5.75187 -3.10266 2.10450 2.52498 3.12147 3.35876 3.38930 3.41997 3.46436 4.16718 4.17674 4.31970 4.38631 4.45318 4.59520 4.60998 4.62457 4.65702 4.84676 4.92746 4.94488 4.99183 5.08957 5.12523 5.18368 5.22475 5.28746 5.31825 5.47087 5.47643 5.52934 5.56949 5.61590 5.77528 5.84385 5.99161 6.00403 6.11122 6.18606 6.20683 6.23244 6.29885 6.37144 6.46343 6.78954 6.83113 7.02640 7.77204 8.01899 8.44233 9.23887 9.96515 10.16840 11.43381 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.001517 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.167811 B =18456.433679 C =18746.305077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.059 3.941 5 O -0.378 6.378 6 C 0.076 3.924 7 C 0.031 3.969 8 H 0.070 0.930 9 C 0.517 3.483 10 O -0.515 6.515 11 N -0.730 5.730 12 C 0.118 3.882 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.245 4.245 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.401 0.599 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 33.240 -18.171 39.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.110 4.110 4 C -0.018 4.018 5 O -0.296 6.296 6 C -0.001 4.001 7 C -0.081 4.081 8 H 0.088 0.912 9 C 0.301 3.699 10 O -0.389 6.389 11 N -0.383 5.383 12 C -0.005 4.005 13 C -0.169 4.169 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.375 4.375 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.726 32.648 -19.010 39.011 hybrid contribution -0.875 -0.194 -0.063 0.899 sum 8.850 32.454 -19.073 38.670 Atomic orbital electron populations 1.22514 0.86001 1.03772 1.00581 1.61975 1.08981 1.13022 1.40528 1.22876 0.96594 0.89244 1.02284 1.22758 0.92097 0.96703 0.90208 1.88030 1.69488 1.23418 1.48650 1.22545 0.89241 0.84668 1.03680 1.22348 0.98157 0.93071 0.94554 0.91244 1.20170 0.78412 0.87113 0.84155 1.90738 1.48467 1.70399 1.29269 1.46113 1.67086 1.15914 1.09171 1.21466 0.99742 0.81235 0.98088 1.21827 1.02329 0.97504 0.95222 1.21516 1.01513 0.94225 0.98193 1.21487 1.01508 0.96327 0.95823 1.21781 1.01028 0.95295 0.98762 1.20637 0.96821 0.86042 0.93606 1.42745 1.79581 1.12048 1.06026 1.19095 1.36375 0.95124 0.86864 0.89272 1.24682 1.01389 0.96718 0.96507 1.69707 1.52242 1.11177 1.25233 0.86518 0.78135 0.79092 0.84628 1.21076 1.21707 1.20346 0.90682 0.90077 0.95551 0.93628 0.88882 0.87928 0.91762 0.91217 0.87731 0.76513 0.91334 0.91206 0.91128 0.91232 0.91671 0.91615 0.91867 0.91913 0.92156 0.92116 0.95701 0.95774 0.80720 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.16 60.06 0.55 0.69 16 2 N -0.52 -4.05 4.53 -235.97 -1.07 -5.12 16 3 C 0.02 0.10 5.66 -3.71 -0.02 0.08 16 4 C 0.06 0.32 7.01 37.21 0.26 0.58 16 5 O -0.38 -2.82 10.83 -35.23 -0.38 -3.20 16 6 C 0.08 0.51 6.27 37.21 0.23 0.75 16 7 C 0.03 0.22 2.38 -68.75 -0.16 0.06 16 8 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 9 C 0.52 4.61 6.01 -10.98 -0.07 4.54 16 10 O -0.51 -6.68 15.38 5.56 0.09 -6.59 16 11 N -0.73 -4.89 5.56 -60.30 -0.33 -5.23 16 12 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 13 C -0.13 -0.90 5.33 -26.74 -0.14 -1.04 16 14 C -0.12 -1.04 5.21 -26.74 -0.14 -1.18 16 15 C -0.11 -1.26 5.21 -26.74 -0.14 -1.40 16 16 C -0.13 -1.94 5.33 -26.73 -0.14 -2.09 16 17 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16 18 N -0.76 -18.65 5.41 -59.91 -0.32 -18.97 16 19 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 20 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 23 Si 0.89 22.50 27.73 -169.99 -4.71 17.79 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.08 0.75 6.26 -51.92 -0.33 0.43 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.40 1.64 8.47 -40.82 -0.35 1.29 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.36 8.60 5.53 -40.82 -0.23 8.37 16 50 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -35.56 397.20 -9.41 -44.97 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -9.36 Total: 1.85 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.95 Total: -58.39 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.30 Total: -9.80 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.56 -9.41 -44.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178250077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.667 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds