Wall clock time and date at job start Tue Mar 31 2020 11:20:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47014 * 110.99938 * 2 1
4 4 C 1.53096 * 109.25943 * 182.39312 * 3 2 1
5 5 O 1.43018 * 109.25582 * 303.15005 * 4 3 2
6 6 C 1.43008 * 113.73798 * 58.67354 * 5 4 3
7 7 C 1.47020 * 111.00222 * 123.63354 * 2 1 3
8 8 H 1.09003 * 109.50282 * 297.54360 * 7 2 1
9 9 C 1.50696 * 109.50456 * 57.67437 * 7 2 1
10 10 O 1.21281 * 120.00326 * 28.00687 * 9 7 2
11 11 N 1.34783 * 119.99770 * 208.01092 * 9 7 2
12 12 C 1.46496 * 119.99847 * 179.97438 * 11 9 7
13 13 C 1.53000 * 109.47310 * 179.97438 * 12 11 9
14 14 C 1.52991 * 109.47670 * 180.02562 * 13 12 11
15 15 C 1.53000 * 109.47670 * 179.97438 * 14 13 12
16 16 C 1.52992 * 109.47337 * 180.02562 * 15 14 13
17 17 C 1.53008 * 109.47185 * 180.02562 * 16 15 14
18 18 N 1.46496 * 109.47157 * 179.97438 * 17 16 15
19 19 C 1.36940 * 120.00013 * 179.97438 * 18 17 16
20 20 H 1.08005 * 119.99606 * 359.97438 * 19 18 17
21 21 C 1.38811 * 120.00111 * 180.02562 * 19 18 17
22 22 N 1.31615 * 119.99714 * 180.02562 * 21 19 18
23 23 Si 1.86799 * 119.99973 * 359.97438 * 21 19 18
24 24 H 1.48504 * 109.46954 * 89.99983 * 23 21 19
25 25 H 1.48496 * 109.47131 * 209.99962 * 23 21 19
26 26 H 1.48499 * 109.47096 * 330.00214 * 23 21 19
27 27 H 1.08998 * 109.47102 * 54.82564 * 1 2 3
28 28 H 1.09008 * 109.46958 * 174.82511 * 1 2 3
29 29 H 1.09005 * 109.47103 * 294.82098 * 1 2 3
30 30 H 1.08997 * 109.50977 * 62.45826 * 3 2 1
31 31 H 1.09002 * 109.50604 * 302.32461 * 3 2 1
32 32 H 1.08999 * 109.50852 * 183.21379 * 4 3 2
33 33 H 1.09005 * 109.54436 * 63.10377 * 4 3 2
34 34 H 1.08997 * 109.51161 * 61.26581 * 6 5 4
35 35 H 1.09002 * 109.50585 * 181.39571 * 6 5 4
36 36 H 0.96995 * 119.99516 * 359.97438 * 11 9 7
37 37 H 1.08998 * 109.47405 * 300.00045 * 12 11 9
38 38 H 1.09002 * 109.47032 * 60.00414 * 12 11 9
39 39 H 1.08998 * 109.47148 * 300.00478 * 13 12 11
40 40 H 1.09005 * 109.47131 * 59.99970 * 13 12 11
41 41 H 1.08998 * 109.47208 * 300.00421 * 14 13 12
42 42 H 1.09005 * 109.46885 * 59.99799 * 14 13 12
43 43 H 1.08998 * 109.47148 * 300.00458 * 15 14 13
44 44 H 1.08997 * 109.46837 * 60.00023 * 15 14 13
45 45 H 1.08997 * 109.47184 * 299.99679 * 16 15 14
46 46 H 1.08997 * 109.47281 * 60.00120 * 16 15 14
47 47 H 1.08998 * 109.47082 * 300.00148 * 17 16 15
48 48 H 1.09002 * 109.46729 * 60.00133 * 17 16 15
49 49 H 0.97004 * 120.00435 * 0.02562 * 18 17 16
50 50 H 0.97005 * 120.00082 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9958 1.3725 0.0000
4 6 3.5249 1.3265 -0.0603
5 8 4.0174 0.5575 1.0403
6 6 3.5250 -0.7848 1.0709
7 6 1.9959 -0.7602 1.1428
8 1 1.6828 -0.2842 2.0720
9 6 1.4671 -2.1706 1.0957
10 8 1.1756 -2.6737 0.0314
11 7 1.3181 -2.8728 2.2364
12 6 0.8035 -4.2437 2.1907
13 6 0.7334 -4.8097 3.6104
14 6 0.1966 -6.2416 3.5627
15 6 0.1270 -6.8079 4.9823
16 6 -0.4092 -8.2400 4.9345
17 6 -0.4793 -8.8060 6.3543
18 7 -0.9933 -10.1771 6.3085
19 6 -1.1436 -10.8910 7.4674
20 1 -0.8828 -10.4433 8.4151
21 6 -1.6302 -12.1903 7.4240
22 7 -1.7751 -12.8763 8.5379
23 14 -2.0806 -12.9648 5.7848
24 1 -0.8929 -13.6550 5.2206
25 1 -3.1753 -13.9477 5.9860
26 1 -2.5314 -11.9071 4.8449
27 1 -0.3633 0.5920 -0.8400
28 1 -0.3633 -1.0236 -0.0927
29 1 -0.3633 0.4314 0.9328
30 1 1.6828 1.8826 0.9110
31 1 1.6133 1.9092 -0.8682
32 1 3.9221 2.3399 -0.0030
33 1 3.8392 0.8648 -0.9964
34 1 3.8386 -1.3083 0.1678
35 1 3.9222 -1.2983 1.9465
36 1 1.5516 -2.4705 3.0875
37 1 -0.1932 -4.2431 1.7497
38 1 1.4680 -4.8612 1.5863
39 1 1.7303 -4.8103 4.0510
40 1 0.0692 -4.1923 4.2153
41 1 -0.8003 -6.2414 3.1219
42 1 0.8611 -6.8587 2.9579
43 1 1.1241 -6.8081 5.4227
44 1 -0.5372 -6.1909 5.5874
45 1 -1.4062 -8.2401 4.4941
46 1 0.2554 -8.8567 4.3295
47 1 0.5175 -8.8058 6.7952
48 1 -1.1442 -8.1891 6.9589
49 1 -1.2265 -10.5795 5.4573
50 1 -2.1147 -13.7844 8.5076
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001178250077.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:47
Heat of formation + Delta-G solvation = -77.636747 kcal
Electronic energy + Delta-G solvation = -25313.435559 eV
Core-core repulsion = 21568.589140 eV
Total energy + Delta-G solvation = -3744.846419 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 313.215 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.98671 -39.18398 -37.00738 -36.16039 -35.50618 -34.10425 -32.42479 -31.71553
-30.36885 -29.35828 -27.34148 -25.36887 -24.77490 -23.94114 -22.19812 -21.74359
-21.12578 -20.86010 -20.31739 -17.88180 -17.45960 -17.12622 -16.95582 -16.33175
-16.25951 -15.65719 -15.37141 -15.12501 -14.91389 -14.54555 -14.40476 -14.25961
-13.94289 -13.48856 -13.26047 -13.22128 -12.88258 -12.71791 -12.71544 -12.44512
-12.25044 -11.87728 -11.78346 -11.64375 -11.48474 -11.30281 -11.03227 -10.87685
-10.80253 -10.54429 -10.38557 -10.34420 -10.10276 -9.98577 -9.57042 -9.50234
-8.99739 -8.87124 -7.20442 -5.75187 -3.10266 2.10450 2.52498 3.12147
3.35876 3.38930 3.41997 3.46436 4.16718 4.17674 4.31970 4.38631
4.45318 4.59520 4.60998 4.62457 4.65702 4.84676 4.92746 4.94488
4.99183 5.08957 5.12523 5.18368 5.22475 5.28746 5.31825 5.47087
5.47643 5.52934 5.56949 5.61590 5.77528 5.84385 5.99161 6.00403
6.11122 6.18606 6.20683 6.23244 6.29885 6.37144 6.46343 6.78954
6.83113 7.02640 7.77204 8.01899 8.44233 9.23887 9.96515 10.16840
11.43381
Molecular weight = 313.22amu
Principal moments of inertia in cm(-1)
A = 0.039362 B = 0.001517 C = 0.001493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 711.167811 B =18456.433679 C =18746.305077
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.519 5.519
3 C 0.018 3.982
4 C 0.059 3.941
5 O -0.378 6.378
6 C 0.076 3.924
7 C 0.031 3.969
8 H 0.070 0.930
9 C 0.517 3.483
10 O -0.515 6.515
11 N -0.730 5.730
12 C 0.118 3.882
13 C -0.131 4.131
14 C -0.116 4.116
15 C -0.113 4.113
16 C -0.131 4.131
17 C 0.156 3.844
18 N -0.759 5.759
19 C -0.245 4.245
20 H 0.089 0.911
21 C 0.003 3.997
22 N -0.935 5.935
23 Si 0.886 3.114
24 H -0.284 1.284
25 H -0.291 1.291
26 H -0.277 1.277
27 H 0.074 0.926
28 H 0.081 0.919
29 H 0.026 0.974
30 H 0.045 0.955
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.064 0.936
34 H 0.070 0.930
35 H 0.105 0.895
36 H 0.401 0.599
37 H 0.068 0.932
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.069 0.931
41 H 0.065 0.935
42 H 0.065 0.935
43 H 0.063 0.937
44 H 0.062 0.938
45 H 0.060 0.940
46 H 0.060 0.940
47 H 0.025 0.975
48 H 0.024 0.976
49 H 0.360 0.640
50 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.663 33.240 -18.171 39.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.245 5.245
3 C -0.110 4.110
4 C -0.018 4.018
5 O -0.296 6.296
6 C -0.001 4.001
7 C -0.081 4.081
8 H 0.088 0.912
9 C 0.301 3.699
10 O -0.389 6.389
11 N -0.383 5.383
12 C -0.005 4.005
13 C -0.169 4.169
14 C -0.154 4.154
15 C -0.151 4.151
16 C -0.169 4.169
17 C 0.029 3.971
18 N -0.404 5.404
19 C -0.375 4.375
20 H 0.107 0.893
21 C -0.193 4.193
22 N -0.584 5.584
23 Si 0.716 3.284
24 H -0.211 1.211
25 H -0.217 1.217
26 H -0.203 1.203
27 H 0.093 0.907
28 H 0.099 0.901
29 H 0.044 0.956
30 H 0.064 0.936
31 H 0.111 0.889
32 H 0.121 0.879
33 H 0.082 0.918
34 H 0.088 0.912
35 H 0.123 0.877
36 H 0.235 0.765
37 H 0.087 0.913
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.088 0.912
41 H 0.083 0.917
42 H 0.084 0.916
43 H 0.081 0.919
44 H 0.081 0.919
45 H 0.078 0.922
46 H 0.079 0.921
47 H 0.043 0.957
48 H 0.042 0.958
49 H 0.193 0.807
50 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 9.726 32.648 -19.010 39.011
hybrid contribution -0.875 -0.194 -0.063 0.899
sum 8.850 32.454 -19.073 38.670
Atomic orbital electron populations
1.22514 0.86001 1.03772 1.00581 1.61975 1.08981 1.13022 1.40528
1.22876 0.96594 0.89244 1.02284 1.22758 0.92097 0.96703 0.90208
1.88030 1.69488 1.23418 1.48650 1.22545 0.89241 0.84668 1.03680
1.22348 0.98157 0.93071 0.94554 0.91244 1.20170 0.78412 0.87113
0.84155 1.90738 1.48467 1.70399 1.29269 1.46113 1.67086 1.15914
1.09171 1.21466 0.99742 0.81235 0.98088 1.21827 1.02329 0.97504
0.95222 1.21516 1.01513 0.94225 0.98193 1.21487 1.01508 0.96327
0.95823 1.21781 1.01028 0.95295 0.98762 1.20637 0.96821 0.86042
0.93606 1.42745 1.79581 1.12048 1.06026 1.19095 1.36375 0.95124
0.86864 0.89272 1.24682 1.01389 0.96718 0.96507 1.69707 1.52242
1.11177 1.25233 0.86518 0.78135 0.79092 0.84628 1.21076 1.21707
1.20346 0.90682 0.90077 0.95551 0.93628 0.88882 0.87928 0.91762
0.91217 0.87731 0.76513 0.91334 0.91206 0.91128 0.91232 0.91671
0.91615 0.91867 0.91913 0.92156 0.92116 0.95701 0.95774 0.80720
0.93092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.14 9.16 60.06 0.55 0.69 16
2 N -0.52 -4.05 4.53 -235.97 -1.07 -5.12 16
3 C 0.02 0.10 5.66 -3.71 -0.02 0.08 16
4 C 0.06 0.32 7.01 37.21 0.26 0.58 16
5 O -0.38 -2.82 10.83 -35.23 -0.38 -3.20 16
6 C 0.08 0.51 6.27 37.21 0.23 0.75 16
7 C 0.03 0.22 2.38 -68.75 -0.16 0.06 16
8 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
9 C 0.52 4.61 6.01 -10.98 -0.07 4.54 16
10 O -0.51 -6.68 15.38 5.56 0.09 -6.59 16
11 N -0.73 -4.89 5.56 -60.30 -0.33 -5.23 16
12 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16
13 C -0.13 -0.90 5.33 -26.74 -0.14 -1.04 16
14 C -0.12 -1.04 5.21 -26.74 -0.14 -1.18 16
15 C -0.11 -1.26 5.21 -26.74 -0.14 -1.40 16
16 C -0.13 -1.94 5.33 -26.73 -0.14 -2.09 16
17 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16
18 N -0.76 -18.65 5.41 -59.91 -0.32 -18.97 16
19 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16
20 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16
21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16
22 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16
23 Si 0.89 22.50 27.73 -169.99 -4.71 17.79 16
24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16
26 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16
27 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16
28 H 0.08 0.75 6.26 -51.92 -0.33 0.43 16
29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16
30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16
31 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16
32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.40 1.64 8.47 -40.82 -0.35 1.29 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
49 H 0.36 8.60 5.53 -40.82 -0.23 8.37 16
50 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16
LS Contribution 397.20 15.07 5.99 5.99
Total: -1.00 -35.56 397.20 -9.41 -44.97
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: -9.36 Total: 1.85 kcal
Atomic # 6 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal
Atomic # 7 Polarization: -57.44 SS G_CDS: -0.95 Total: -58.39 kcal
Atomic # 8 Polarization: -9.50 SS G_CDS: -0.30 Total: -9.80 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -35.56 -9.41 -44.97 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178250077.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.667 kcal
(2) G-P(sol) polarization free energy of solvation -35.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds