Wall clock time and date at job start Tue Mar 31 2020 11:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47014 * 110.99938 * 2 1 4 4 C 1.53096 * 109.25943 * 182.39312 * 3 2 1 5 5 O 1.43018 * 109.25582 * 303.15005 * 4 3 2 6 6 C 1.43008 * 113.73798 * 58.67354 * 5 4 3 7 7 C 1.47020 * 111.00222 * 123.63354 * 2 1 3 8 8 H 1.09003 * 109.50282 * 297.54360 * 7 2 1 9 9 C 1.50696 * 109.50456 * 57.67437 * 7 2 1 10 10 O 1.21281 * 120.00326 * 28.00687 * 9 7 2 11 11 N 1.34783 * 119.99770 * 208.01092 * 9 7 2 12 12 C 1.46496 * 119.99847 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47310 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47670 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47670 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.47185 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47157 * 179.97438 * 17 16 15 19 19 C 1.36940 * 120.00013 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99606 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00111 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99714 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99973 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46954 * 89.99983 * 23 21 19 25 25 H 1.48496 * 109.47131 * 209.99962 * 23 21 19 26 26 H 1.48499 * 109.47096 * 330.00214 * 23 21 19 27 27 H 1.08998 * 109.47102 * 54.82564 * 1 2 3 28 28 H 1.09008 * 109.46958 * 174.82511 * 1 2 3 29 29 H 1.09005 * 109.47103 * 294.82098 * 1 2 3 30 30 H 1.08997 * 109.50977 * 62.45826 * 3 2 1 31 31 H 1.09002 * 109.50604 * 302.32461 * 3 2 1 32 32 H 1.08999 * 109.50852 * 183.21379 * 4 3 2 33 33 H 1.09005 * 109.54436 * 63.10377 * 4 3 2 34 34 H 1.08997 * 109.51161 * 61.26581 * 6 5 4 35 35 H 1.09002 * 109.50585 * 181.39571 * 6 5 4 36 36 H 0.96995 * 119.99516 * 359.97438 * 11 9 7 37 37 H 1.08998 * 109.47405 * 300.00045 * 12 11 9 38 38 H 1.09002 * 109.47032 * 60.00414 * 12 11 9 39 39 H 1.08998 * 109.47148 * 300.00478 * 13 12 11 40 40 H 1.09005 * 109.47131 * 59.99970 * 13 12 11 41 41 H 1.08998 * 109.47208 * 300.00421 * 14 13 12 42 42 H 1.09005 * 109.46885 * 59.99799 * 14 13 12 43 43 H 1.08998 * 109.47148 * 300.00458 * 15 14 13 44 44 H 1.08997 * 109.46837 * 60.00023 * 15 14 13 45 45 H 1.08997 * 109.47184 * 299.99679 * 16 15 14 46 46 H 1.08997 * 109.47281 * 60.00120 * 16 15 14 47 47 H 1.08998 * 109.47082 * 300.00148 * 17 16 15 48 48 H 1.09002 * 109.46729 * 60.00133 * 17 16 15 49 49 H 0.97004 * 120.00435 * 0.02562 * 18 17 16 50 50 H 0.97005 * 120.00082 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0174 0.5575 1.0403 6 6 3.5250 -0.7848 1.0709 7 6 1.9959 -0.7602 1.1428 8 1 1.6828 -0.2842 2.0720 9 6 1.4671 -2.1706 1.0957 10 8 1.1756 -2.6737 0.0314 11 7 1.3181 -2.8728 2.2364 12 6 0.8035 -4.2437 2.1907 13 6 0.7334 -4.8097 3.6104 14 6 0.1966 -6.2416 3.5627 15 6 0.1270 -6.8079 4.9823 16 6 -0.4092 -8.2400 4.9345 17 6 -0.4793 -8.8060 6.3543 18 7 -0.9933 -10.1771 6.3085 19 6 -1.1436 -10.8910 7.4674 20 1 -0.8828 -10.4433 8.4151 21 6 -1.6302 -12.1903 7.4240 22 7 -1.7751 -12.8763 8.5379 23 14 -2.0806 -12.9648 5.7848 24 1 -0.8929 -13.6550 5.2206 25 1 -3.1753 -13.9477 5.9860 26 1 -2.5314 -11.9071 4.8449 27 1 -0.3633 0.5920 -0.8400 28 1 -0.3633 -1.0236 -0.0927 29 1 -0.3633 0.4314 0.9328 30 1 1.6828 1.8826 0.9110 31 1 1.6133 1.9092 -0.8682 32 1 3.9221 2.3399 -0.0030 33 1 3.8392 0.8648 -0.9964 34 1 3.8386 -1.3083 0.1678 35 1 3.9222 -1.2983 1.9465 36 1 1.5516 -2.4705 3.0875 37 1 -0.1932 -4.2431 1.7497 38 1 1.4680 -4.8612 1.5863 39 1 1.7303 -4.8103 4.0510 40 1 0.0692 -4.1923 4.2153 41 1 -0.8003 -6.2414 3.1219 42 1 0.8611 -6.8587 2.9579 43 1 1.1241 -6.8081 5.4227 44 1 -0.5372 -6.1909 5.5874 45 1 -1.4062 -8.2401 4.4941 46 1 0.2554 -8.8567 4.3295 47 1 0.5175 -8.8058 6.7952 48 1 -1.1442 -8.1891 6.9589 49 1 -1.2265 -10.5795 5.4573 50 1 -2.1147 -13.7844 8.5076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178250077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:46 Heat of formation + Delta-G solvation = -105.142112 kcal Electronic energy + Delta-G solvation = -25314.628281 eV Core-core repulsion = 21568.589140 eV Total energy + Delta-G solvation = -3746.039141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58030 -39.77176 -37.98848 -36.98251 -36.52081 -35.34034 -33.75151 -32.76092 -31.64931 -29.91455 -28.49355 -26.19379 -25.31745 -25.12947 -23.53160 -22.38242 -22.27024 -21.84541 -20.93956 -19.61650 -18.44938 -17.67998 -17.52125 -16.98924 -16.85348 -16.60682 -16.28274 -15.98085 -15.89965 -15.75254 -15.44849 -15.17613 -14.89422 -14.87210 -14.16886 -14.15738 -14.05668 -13.48459 -13.44529 -13.33926 -13.27557 -13.00832 -12.74878 -12.66378 -12.47468 -12.29209 -12.08497 -11.89612 -11.86263 -11.81954 -11.76015 -11.53639 -11.33994 -11.07780 -10.97905 -10.65239 -10.15864 -9.49575 -9.31490 -8.05043 -5.38868 1.36858 1.40652 1.43846 1.48285 1.94843 2.47103 2.63206 2.90194 3.26277 3.55269 3.65380 3.66757 3.87181 3.89571 3.89985 4.01968 4.15779 4.20598 4.22550 4.24264 4.30557 4.42838 4.46122 4.56628 4.58909 4.60826 4.62363 4.77127 4.79760 4.83552 4.88759 4.92886 4.96567 4.99472 5.04596 5.14671 5.27615 5.32727 5.40738 5.52884 5.55471 5.68353 5.73401 5.83402 6.00080 6.19540 6.48290 7.06153 7.16054 7.83119 8.02332 9.16520 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.001517 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.167811 B =18456.433679 C =18746.305077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.390 6.390 6 C 0.078 3.922 7 C 0.036 3.964 8 H 0.087 0.913 9 C 0.518 3.482 10 O -0.561 6.561 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.149 3.851 18 N -0.763 5.763 19 C -0.242 4.242 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.252 1.252 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.123 0.877 36 H 0.416 0.584 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.023 0.977 48 H 0.021 0.979 49 H 0.366 0.634 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 35.073 -19.486 41.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.107 4.107 4 C -0.021 4.021 5 O -0.308 6.308 6 C 0.000 4.000 7 C -0.077 4.077 8 H 0.105 0.895 9 C 0.303 3.697 10 O -0.439 6.439 11 N -0.369 5.369 12 C -0.002 4.002 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.409 5.409 19 C -0.373 4.373 20 H 0.073 0.927 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.786 3.214 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.176 1.176 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.199 0.801 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.119 34.545 -20.313 41.332 hybrid contribution -0.951 -0.697 0.430 1.255 sum 9.167 33.848 -19.882 40.312 Atomic orbital electron populations 1.22431 0.85990 1.02420 1.01562 1.61961 1.09232 1.14422 1.41190 1.22930 0.96462 0.88160 1.03181 1.22931 0.92226 0.97539 0.89453 1.88014 1.69823 1.23619 1.49354 1.22574 0.89006 0.84609 1.03795 1.22337 0.98257 0.91880 0.95198 0.89525 1.20518 0.77628 0.87741 0.83822 1.90716 1.50669 1.71480 1.31029 1.45997 1.66009 1.15458 1.09456 1.21355 0.98847 0.81539 0.98463 1.21702 1.03153 0.96175 0.94627 1.21447 1.01687 0.95384 0.96585 1.21423 1.01662 0.93936 0.97397 1.21702 1.01528 0.97394 0.95246 1.20875 0.96065 0.83759 0.96942 1.42800 1.79738 1.13651 1.04680 1.19097 1.35349 0.95555 0.87314 0.92728 1.25570 1.01950 0.97388 1.00740 1.69893 1.53845 1.11609 1.28070 0.85344 0.77789 0.78361 0.79902 1.20254 1.21994 1.17620 0.89746 0.92562 0.94476 0.93009 0.87596 0.85697 0.92407 0.92872 0.85866 0.74693 0.92531 0.92318 0.89928 0.90154 0.91803 0.91672 0.91283 0.91400 0.92042 0.91862 0.95935 0.96073 0.80093 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.16 127.69 1.17 1.50 16 2 N -0.54 -7.93 4.53 -900.46 -4.08 -12.01 16 3 C 0.02 0.19 5.66 86.31 0.49 0.67 16 4 C 0.06 0.51 7.01 72.01 0.50 1.02 16 5 O -0.39 -5.22 10.83 -148.98 -1.61 -6.83 16 6 C 0.08 0.96 6.27 72.01 0.45 1.41 16 7 C 0.04 0.46 2.38 44.18 0.10 0.57 16 8 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 9 C 0.52 8.87 6.01 87.65 0.53 9.40 16 10 O -0.56 -14.82 15.38 -3.03 -0.05 -14.86 16 11 N -0.72 -8.44 5.56 -463.06 -2.57 -11.01 16 12 C 0.12 1.69 5.67 86.38 0.49 2.18 16 13 C -0.12 -1.30 5.33 30.59 0.16 -1.14 16 14 C -0.11 -1.74 5.21 30.59 0.16 -1.58 16 15 C -0.11 -2.08 5.21 30.59 0.16 -1.92 16 16 C -0.12 -3.33 5.33 30.59 0.16 -3.16 16 17 C 0.15 5.69 6.26 86.38 0.54 6.23 16 18 N -0.76 -36.80 5.41 -343.44 -1.86 -38.65 16 19 C -0.24 -14.28 10.47 84.03 0.88 -13.40 16 20 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 23 Si 0.96 46.10 27.73 68.60 1.90 48.01 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 27 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.06 1.06 6.26 -2.38 -0.01 1.05 16 29 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 2.33 8.47 -92.71 -0.79 1.54 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.37 16.68 5.53 -92.71 -0.51 16.17 16 50 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -78.12 397.20 -2.15 -80.27 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.45 Total: 20.51 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.27 Total: -1.68 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -8.21 Total: -125.42 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.66 Total: -21.69 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.01 kcal Total: -78.12 -2.15 -80.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178250077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.871 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds