Wall clock time and date at job start Tue Mar 31 2020 10:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38342 * 119.85833 * 2 1 4 4 C 1.37978 * 120.14430 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.06976 * 180.02562 * 4 3 2 6 6 C 1.39531 * 119.85664 * 359.97438 * 4 3 2 7 7 C 1.47809 * 120.14350 * 179.97438 * 6 4 3 8 8 C 1.32569 * 119.99891 * 129.72450 * 7 6 4 9 9 C 1.50702 * 119.99920 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46767 * 125.00487 * 9 8 7 11 11 C 1.46852 * 110.99991 * 294.20844 * 10 9 8 12 12 C 1.53026 * 109.52438 * 174.16234 * 11 10 9 13 13 C 1.53124 * 109.28102 * 59.17940 * 12 11 10 14 14 C 1.53117 * 109.15940 * 302.34690 * 13 12 11 15 15 H 1.09002 * 109.53686 * 297.69001 * 14 13 12 16 16 C 1.50703 * 109.50724 * 177.59296 * 14 13 12 17 17 H 1.08002 * 119.99926 * 245.63468 * 16 14 13 18 18 C 1.37877 * 119.99546 * 65.62606 * 16 14 13 19 19 N 1.31504 * 120.00323 * 9.55887 * 18 16 14 20 20 Si 1.86803 * 119.99528 * 189.56042 * 18 16 14 21 21 H 1.48503 * 109.47123 * 94.98989 * 20 18 16 22 22 H 1.48498 * 109.47104 * 214.99067 * 20 18 16 23 23 H 1.48502 * 109.47350 * 334.99201 * 20 18 16 24 24 C 1.46843 * 110.99953 * 170.00236 * 10 9 8 25 25 C 1.39540 * 119.71738 * 0.25565 * 6 4 3 26 26 C 1.50693 * 120.07190 * 179.74390 * 25 6 4 27 27 C 1.37979 * 119.85332 * 359.49282 * 25 6 4 28 28 H 1.08993 * 109.47251 * 89.99570 * 1 2 3 29 29 H 1.09001 * 109.46980 * 210.00379 * 1 2 3 30 30 H 1.09004 * 109.46483 * 329.99524 * 1 2 3 31 31 H 1.08001 * 119.93122 * 0.04537 * 3 2 1 32 32 H 1.08996 * 109.46871 * 269.97037 * 5 4 3 33 33 H 1.08996 * 109.47172 * 29.98075 * 5 4 3 34 34 H 1.08997 * 109.46601 * 149.97904 * 5 4 3 35 35 H 1.08001 * 120.00189 * 310.00685 * 7 6 4 36 36 H 1.08002 * 120.00064 * 0.02562 * 8 7 6 37 37 H 1.09005 * 109.46920 * 244.99878 * 9 8 7 38 38 H 1.08994 * 109.47414 * 5.00433 * 9 8 7 39 39 H 1.08998 * 109.45972 * 294.18242 * 11 10 9 40 40 H 1.09001 * 109.45935 * 54.14702 * 11 10 9 41 41 H 1.09000 * 109.50666 * 299.24015 * 12 11 10 42 42 H 1.08998 * 109.50755 * 179.12172 * 12 11 10 43 43 H 1.08998 * 109.52757 * 182.44295 * 13 12 11 44 44 H 1.08996 * 109.52123 * 62.24976 * 13 12 11 45 45 H 0.97006 * 119.99880 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.45876 * 305.85344 * 24 10 9 47 47 H 1.08996 * 109.46798 * 65.81857 * 24 10 9 48 48 H 1.09005 * 109.46822 * 90.00492 * 26 25 6 49 49 H 1.09000 * 109.47175 * 209.99990 * 26 25 6 50 50 H 1.08994 * 109.47368 * 330.00191 * 26 25 6 51 51 H 1.08001 * 119.93090 * 180.25004 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5755 1.2067 -0.0005 5 6 4.3241 2.5147 0.0001 6 6 4.2762 0.0000 -0.0005 7 6 5.7542 0.0000 -0.0017 8 6 6.4177 -0.7333 0.8812 9 6 7.9248 -0.7329 0.8804 10 7 8.4149 -0.3677 2.2162 11 6 8.0601 1.0186 2.5461 12 6 8.4563 1.3172 3.9937 13 6 9.9634 1.1031 4.1599 14 6 10.3135 -0.3339 3.7638 15 1 9.8045 -1.0301 4.4304 16 6 11.8033 -0.5358 3.8679 17 1 12.3855 -0.7286 2.9789 18 6 12.4229 -0.4743 5.0980 19 7 11.7011 -0.4280 6.1963 20 14 14.2878 -0.4565 5.2045 21 1 14.7655 0.9470 5.2892 22 1 14.7217 -1.2009 6.4139 23 1 14.8589 -1.1015 3.9948 24 6 9.8633 -0.5847 2.3227 25 6 3.5755 -1.2067 -0.0054 26 6 4.3242 -2.5145 -0.0113 27 6 2.1958 -1.1998 0.0004 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.6523 2.1331 0.0007 32 1 4.5046 2.8304 -1.0275 33 1 3.7322 3.2718 0.5143 34 1 5.2770 2.3876 0.5138 35 1 6.2937 0.6010 -0.7188 36 1 5.8783 -1.3311 1.6010 37 1 8.2882 -1.7269 0.6192 38 1 8.2875 -0.0098 0.1500 39 1 8.5887 1.6978 1.8773 40 1 6.9853 1.1562 2.4280 41 1 7.9176 0.6476 4.6641 42 1 8.2070 2.3509 4.2335 43 1 10.2430 1.2727 5.1996 44 1 10.5031 1.7996 3.5183 45 1 12.1372 -0.3851 7.0618 46 1 10.0983 -1.6115 2.0423 47 1 10.3836 0.1020 1.6550 48 1 4.5050 -2.8342 1.0150 49 1 3.7321 -3.2698 -0.5281 50 1 5.2768 -2.3855 -0.5249 51 1 1.6522 -2.1331 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182855139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:39 Heat of formation + Delta-G solvation = -1.071742 kcal Electronic energy + Delta-G solvation = -25733.182710 eV Core-core repulsion = 22402.505662 eV Total energy + Delta-G solvation = -3330.677048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73796 -39.83667 -36.65900 -35.27509 -34.46011 -33.86986 -32.22032 -31.59256 -28.77803 -28.44699 -27.58316 -26.88202 -25.89216 -23.52528 -23.09415 -21.68168 -21.37218 -20.51424 -20.15300 -18.43580 -17.29174 -16.80337 -16.66028 -16.16434 -15.77211 -15.48373 -15.24606 -15.00290 -14.86124 -14.54062 -14.33342 -14.12490 -13.97594 -13.91616 -13.83555 -13.81736 -13.47884 -13.32332 -13.26312 -12.92022 -12.83096 -12.60673 -12.57715 -12.48248 -12.44627 -12.03876 -11.91259 -11.82850 -11.73443 -11.56694 -11.35987 -10.84387 -10.68238 -10.41401 -10.32250 -9.44231 -9.14786 -8.97184 -8.12010 -6.20787 0.21359 0.49954 1.36666 1.40654 1.41965 1.52070 2.43178 2.80884 3.18270 3.18534 3.78884 3.90844 3.96933 4.00021 4.15563 4.17390 4.24934 4.33185 4.42549 4.44497 4.50983 4.59709 4.61676 4.66518 4.70288 4.75812 4.77084 4.79543 4.80455 4.82493 4.87401 4.89973 4.96879 5.03942 5.06465 5.09415 5.13320 5.16545 5.36026 5.38070 5.40846 5.43220 5.52300 5.60804 5.64099 5.72475 5.79454 5.88010 5.95084 6.04806 6.17105 6.18438 6.38058 6.46938 6.92530 7.45843 8.96908 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.002436 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.781895 B =11493.139789 C =11822.538061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.115 4.115 9 C 0.084 3.916 10 N -0.547 5.547 11 C 0.073 3.927 12 C -0.111 4.111 13 C -0.098 4.098 14 C 0.051 3.949 15 H 0.000 1.000 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.082 3.918 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.145 2.573 -15.305 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.156 4.156 4 C -0.081 4.081 5 C -0.170 4.170 6 C -0.079 4.079 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.043 4.043 10 N -0.271 5.271 11 C -0.055 4.055 12 C -0.149 4.149 13 C -0.136 4.136 14 C 0.032 3.968 15 H 0.018 0.982 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.777 3.223 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.046 4.046 25 C -0.082 4.082 26 C -0.171 4.171 27 C -0.157 4.157 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.036 0.964 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.348 2.267 -14.779 26.063 hybrid contribution 1.661 0.396 0.025 1.708 sum -19.687 2.663 -14.754 24.746 Atomic orbital electron populations 1.20821 0.89446 1.03482 1.03020 1.20270 0.97412 0.92832 0.98526 1.21063 0.93265 0.98402 1.02871 1.20232 0.94119 0.95031 0.98758 1.20806 0.99957 0.93326 1.02869 1.18948 0.93012 0.92724 1.03212 1.21494 0.91771 1.00176 1.00115 1.23101 0.94402 0.98148 0.97714 1.21173 0.92747 1.01245 0.89166 1.61910 1.14399 1.23517 1.27317 1.21942 1.00091 0.87854 0.95615 1.21578 0.96429 1.00386 0.96463 1.21418 0.94036 0.98298 0.99891 1.18591 0.93887 0.92968 0.91310 0.98176 1.21502 0.93948 1.48951 0.93042 0.92912 1.25720 1.02386 0.94812 0.95472 1.70109 1.36734 1.50933 0.97866 0.85653 0.80838 0.78146 0.77687 1.20186 1.21036 1.19095 1.21990 0.85635 0.99095 0.97864 1.20235 0.94137 0.95030 0.98823 1.20904 1.00296 0.93456 1.02485 1.21054 0.93251 0.98430 1.02935 0.90283 0.90906 0.90805 0.84615 0.90270 0.90559 0.91925 0.86010 0.87377 0.89691 0.94094 0.95411 0.90118 0.93373 0.91149 0.94329 0.95054 0.93075 0.92343 0.96358 0.91242 0.90565 0.91271 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.09 -1.63 5.88 -19.81 -0.12 -1.75 16 3 C -0.14 -2.60 9.34 22.23 0.21 -2.39 16 4 C -0.08 -1.71 5.91 -19.61 -0.12 -1.83 16 5 C -0.11 -1.97 9.62 71.24 0.69 -1.28 16 6 C -0.08 -1.81 5.63 -20.12 -0.11 -1.92 16 7 C -0.12 -2.63 7.08 23.65 0.17 -2.47 16 8 C -0.12 -2.88 6.38 24.53 0.16 -2.73 16 9 C 0.08 2.37 5.41 85.56 0.46 2.83 16 10 N -0.55 -19.77 4.65 -900.93 -4.19 -23.96 16 11 C 0.07 2.47 5.31 86.32 0.46 2.93 16 12 C -0.11 -4.31 6.09 30.64 0.19 -4.13 16 13 C -0.10 -4.71 5.09 30.67 0.16 -4.56 16 14 C 0.05 2.65 2.13 -11.49 -0.02 2.62 16 15 H 0.00 0.00 8.09 -2.39 -0.02 -0.02 16 16 C -0.54 -30.04 8.48 25.60 0.22 -29.83 16 17 H 0.05 2.89 7.77 -2.91 -0.02 2.87 16 18 C 0.02 0.85 5.22 84.66 0.44 1.29 16 19 N -0.92 -54.58 12.19 21.45 0.26 -54.31 16 20 Si 0.95 44.14 29.55 68.60 2.03 46.17 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.08 3.47 4.68 86.33 0.40 3.88 16 25 C -0.08 -1.78 5.84 -19.61 -0.11 -1.90 16 26 C -0.12 -2.17 8.45 71.23 0.60 -1.57 16 27 C -0.14 -2.68 9.34 22.23 0.21 -2.48 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 31 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.06 1.20 7.08 -2.39 -0.02 1.18 16 35 H 0.12 2.53 7.87 -2.91 -0.02 2.50 16 36 H 0.11 2.92 6.77 -2.91 -0.02 2.90 16 37 H 0.08 2.33 7.99 -2.38 -0.02 2.31 16 38 H 0.04 1.09 7.79 -2.39 -0.02 1.07 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 2.44 7.10 -2.39 -0.02 2.43 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.04 2.08 6.99 -2.39 -0.02 2.06 16 44 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 46 H 0.06 2.47 8.02 -2.38 -0.02 2.45 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 1.35 7.54 -2.38 -0.02 1.33 16 49 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 50 H 0.07 1.35 6.48 -2.39 -0.02 1.33 16 51 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -63.41 396.85 3.55 -59.86 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.86 Total: 18.11 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.58 Total: -45.87 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.93 Total: -78.27 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.41 3.55 -59.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182855139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.790 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds