Wall clock time and date at job start Tue Mar 31 2020 11:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48500 * 109.47194 * 270.00195 * 3 2 1 5 5 H 1.48500 * 109.46979 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46827 * 150.00663 * 3 2 1 7 7 C 1.37881 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99458 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00317 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40192 * 66.46514 * 9 7 2 11 11 O 1.42101 * 106.40316 * 293.54442 * 9 7 2 12 12 N 1.65599 * 107.21991 * 180.02562 * 9 7 2 13 13 C 1.39847 * 119.99791 * 65.00068 * 12 9 7 14 14 C 1.39215 * 120.46516 * 35.00400 * 13 12 9 15 15 C 1.38713 * 118.37114 * 179.97438 * 14 13 12 16 16 F 1.35094 * 120.39629 * 179.97438 * 15 14 13 17 17 C 1.38594 * 119.20444 * 359.97438 * 15 14 13 18 18 Cl 1.73595 * 119.56372 * 179.97438 * 17 15 14 19 19 N 1.31964 * 120.86924 * 0.02562 * 17 15 14 20 20 C 1.31920 * 121.78798 * 359.97438 * 19 17 15 21 21 Cl 1.73601 * 119.65096 * 180.02562 * 20 19 17 22 22 H 0.96996 * 119.99659 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00624 * 244.99993 * 12 9 7 24 24 H 1.07997 * 120.81747 * 359.70141 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4517 -2.7955 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.0987 -4.1011 1.0971 14 6 2.6444 -3.8425 2.3874 15 6 3.5247 -4.0216 3.4444 16 9 3.1271 -3.7821 4.7131 17 6 4.8169 -4.4491 3.1833 18 17 5.9264 -4.6757 4.4990 19 7 5.2152 -4.6853 1.9476 20 6 4.4091 -4.5271 0.9154 21 17 4.9912 -4.8545 -0.6871 22 1 -0.4849 0.8400 0.0004 23 1 2.3171 -4.5326 -0.7618 24 1 1.6328 -3.5064 2.5609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938372.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:18 Heat of formation + Delta-G solvation = -130.719901 kcal Electronic energy + Delta-G solvation = -19542.662248 eV Core-core repulsion = 15776.198717 eV Total energy + Delta-G solvation = -3766.463531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.948 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.31176 -41.72721 -38.25107 -37.90045 -37.62464 -36.78667 -36.38347 -35.24277 -33.07442 -30.57789 -28.34439 -25.59832 -24.65257 -21.34802 -20.07791 -19.88024 -18.94434 -18.85612 -18.10308 -17.48850 -17.27295 -17.01387 -16.07414 -15.87626 -15.78319 -15.58838 -14.99975 -14.32149 -14.04921 -13.72712 -13.50108 -13.13941 -13.06513 -12.96518 -12.72147 -12.61360 -12.47536 -12.37605 -12.34433 -12.16573 -11.29728 -11.27961 -11.13018 -10.77843 -9.66221 -8.83292 -7.57710 -0.80452 -0.54275 -0.05154 0.15833 0.66305 1.33167 1.34714 1.49872 1.87841 2.12131 2.30095 2.50040 2.54108 3.02356 3.28576 3.34451 3.55866 3.94218 4.14443 4.18975 4.70070 4.95127 5.21422 5.74955 5.82112 5.90681 6.71765 8.13340 Molecular weight = 313.95amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.005876 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.294853 B = 4764.400371 C = 5284.247424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.081 3.919 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.251 1.251 7 C -1.032 5.032 8 H 0.119 0.881 9 S 2.708 3.292 10 O -1.016 7.016 11 O -1.010 7.010 12 N -1.042 6.042 13 C 0.185 3.815 14 C -0.148 4.148 15 C 0.113 3.887 16 F -0.103 7.103 17 C 0.128 3.872 18 Cl 0.014 6.986 19 N -0.425 5.425 20 C 0.148 3.852 21 Cl 0.012 6.988 22 H 0.302 0.698 23 H 0.435 0.565 24 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -7.117 4.442 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.134 4.134 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.175 1.175 7 C -1.166 5.166 8 H 0.138 0.862 9 S 2.811 3.189 10 O -1.006 7.006 11 O -1.000 7.000 12 N -0.788 5.788 13 C 0.081 3.919 14 C -0.177 4.177 15 C 0.089 3.911 16 F -0.081 7.081 17 C -0.039 4.039 18 Cl 0.043 6.957 19 N -0.137 5.137 20 C -0.022 4.022 21 Cl 0.041 6.959 22 H 0.113 0.887 23 H 0.274 0.726 24 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.920 -7.419 4.360 13.133 hybrid contribution -0.090 0.971 -0.172 0.990 sum 9.831 -6.448 4.188 12.480 Atomic orbital electron populations 1.69937 1.08402 1.32681 1.40383 1.25828 0.95338 1.04779 0.87450 0.85220 0.79220 0.75283 0.80190 1.17820 1.18496 1.17474 1.30651 1.07005 1.11345 1.67613 0.86245 1.00693 0.72240 0.73606 0.72387 1.93378 1.73337 1.87655 1.46204 1.93242 1.73455 1.87599 1.45674 1.53726 1.51665 1.48665 1.24734 1.17749 0.88941 0.97739 0.87456 1.22635 1.04287 1.01435 0.89374 1.17812 0.91604 1.00974 0.80719 1.91597 1.90667 1.91337 1.34525 1.21457 0.89067 1.03779 0.89613 1.98424 1.61613 1.95178 1.40491 1.66367 1.35662 1.14597 0.97073 1.21355 0.87867 1.03676 0.89287 1.98417 1.88768 1.93400 1.15358 0.88735 0.72607 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.41 13.19 21.45 0.28 -48.12 14 2 C 0.08 4.15 5.46 84.65 0.46 4.61 14 3 Si 0.98 38.66 29.54 68.60 2.03 40.69 14 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 14 5 H -0.26 -9.68 7.11 99.48 0.71 -8.98 14 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 14 7 C -1.03 -51.67 9.68 67.74 0.66 -51.01 14 8 H 0.12 5.47 7.81 -2.91 -0.02 5.44 14 9 S 2.71 129.32 4.87 -56.49 -0.28 129.05 14 10 O -1.02 -54.53 18.02 -128.00 -2.31 -56.84 14 11 O -1.01 -51.51 14.74 -128.00 -1.89 -53.39 14 12 N -1.04 -37.06 5.51 -51.03 -0.28 -37.34 14 13 C 0.18 6.19 6.36 38.28 0.24 6.44 14 14 C -0.15 -5.06 9.32 22.62 0.21 -4.85 14 15 C 0.11 3.41 7.30 22.47 0.16 3.58 14 16 F -0.10 -2.98 16.84 44.97 0.76 -2.22 14 17 C 0.13 3.65 7.28 84.76 0.62 4.27 14 18 Cl 0.01 0.34 28.76 -2.72 -0.08 0.26 14 19 N -0.42 -12.55 10.31 -177.00 -1.82 -14.37 14 20 C 0.15 4.47 7.29 84.86 0.62 5.08 14 21 Cl 0.01 0.31 28.12 -2.72 -0.08 0.24 14 22 H 0.30 14.90 8.31 -92.71 -0.77 14.13 14 23 H 0.44 12.87 8.22 -96.75 -0.80 12.07 14 24 H 0.20 7.47 5.13 -2.91 -0.01 7.46 14 Total: -1.00 -61.17 273.40 -0.17 -61.34 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.52 Total: 12.61 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 2.97 Total: -31.88 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -1.82 Total: -99.84 kcal Atomic # 8 Polarization: -106.04 SS G_CDS: -4.19 Total: -110.23 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.76 Total: -2.22 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 129.32 SS G_CDS: -0.28 Total: 129.05 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -0.15 Total: 0.50 kcal Total: -61.17 -0.17 -61.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938372.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.381 kcal (2) G-P(sol) polarization free energy of solvation -61.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds