Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46911 * 2 1 4 4 C 1.46894 * 111.00649 * 297.56177 * 3 2 1 5 5 C 1.52996 * 109.47269 * 288.27428 * 4 3 2 6 6 C 1.46910 * 110.99930 * 61.52023 * 3 2 1 7 7 C 1.50699 * 109.47069 * 66.03983 * 6 3 2 8 8 O 1.21279 * 120.00105 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99464 * 179.97438 * 7 6 3 10 10 C 1.47505 * 118.76222 * 0.02562 * 9 7 6 11 11 C 1.53568 * 111.03069 * 221.62253 * 10 9 7 12 12 C 1.51534 * 109.57963 * 39.97762 * 11 10 9 13 13 O 1.42160 * 108.76394 * 268.59908 * 12 11 10 14 14 C 1.38019 * 119.43349 * 87.22084 * 13 12 11 15 15 H 1.08997 * 109.46926 * 56.57562 * 14 13 12 16 16 C 1.53001 * 109.46605 * 176.57234 * 14 13 12 17 17 N 1.46503 * 109.47333 * 300.00168 * 16 14 13 18 18 C 1.36934 * 120.00018 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99685 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00253 * 359.73267 * 20 18 17 22 22 Si 1.86806 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47126 * 179.72965 * 22 20 18 24 24 H 1.48507 * 109.46947 * 299.72869 * 22 20 18 25 25 H 1.48495 * 109.47185 * 59.72484 * 22 20 18 26 26 C 1.45127 * 118.75827 * 179.97438 * 9 7 6 27 27 H 1.09001 * 109.47379 * 61.25936 * 1 2 3 28 28 H 1.09001 * 109.47065 * 181.26500 * 1 2 3 29 29 H 1.09002 * 109.46801 * 301.26523 * 1 2 3 30 30 H 1.08999 * 109.46664 * 240.00998 * 2 1 3 31 31 H 1.08992 * 109.47275 * 120.00315 * 2 1 3 32 32 H 1.09006 * 109.46875 * 48.26796 * 4 3 2 33 33 H 1.09001 * 109.47760 * 168.26926 * 4 3 2 34 34 H 1.08994 * 109.47320 * 179.87780 * 5 4 3 35 35 H 1.09003 * 109.46673 * 299.87889 * 5 4 3 36 36 H 1.08998 * 109.47607 * 59.87302 * 5 4 3 37 37 H 1.08999 * 109.46311 * 306.03963 * 6 3 2 38 38 H 1.09000 * 109.46693 * 186.04593 * 6 3 2 39 39 H 1.09007 * 109.16652 * 101.22183 * 10 9 7 40 40 H 1.09000 * 109.16510 * 342.02291 * 10 9 7 41 41 H 1.09003 * 109.45372 * 279.94299 * 11 10 9 42 42 H 1.08998 * 109.45483 * 160.00942 * 11 10 9 43 43 H 1.09001 * 109.59199 * 148.81484 * 12 11 10 44 44 H 1.08999 * 109.58843 * 28.38608 * 12 11 10 45 45 H 1.09001 * 109.46597 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47211 * 60.00502 * 16 14 13 47 47 H 0.96996 * 119.99699 * 0.02562 * 17 16 14 48 48 H 0.97001 * 120.00029 * 0.27102 * 21 20 18 49 49 H 1.09003 * 109.45687 * 330.69318 * 26 9 7 50 50 H 1.09002 * 109.46547 * 210.73217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5969 2.0929 -1.2157 5 6 2.3835 1.5609 -2.4153 6 6 1.5785 2.0993 1.2056 7 6 2.2312 1.4882 2.4186 8 8 2.9895 0.5503 2.2915 9 7 1.9729 1.9846 3.6447 10 6 1.0468 3.1261 3.7676 11 6 1.5670 4.1507 4.7864 12 6 3.0674 4.3001 4.6353 13 8 3.7089 3.3810 5.5098 14 6 3.9581 2.0943 5.0772 15 1 4.5524 2.1268 4.1641 16 6 4.7263 1.3325 6.1590 17 7 5.9962 2.0123 6.4268 18 6 6.8575 1.5095 7.3650 19 1 6.6009 0.6114 7.9074 20 6 8.0608 2.1533 7.6183 21 7 8.3763 3.2442 6.9529 22 14 9.2362 1.4670 8.8977 23 1 10.4434 2.3283 8.9734 24 1 8.5647 1.4383 10.2220 25 1 9.6346 0.0886 8.5150 26 6 2.6156 1.3752 4.7944 27 1 -0.3634 0.4941 -0.9011 28 1 -0.3633 -1.0274 0.0227 29 1 -0.3633 0.5334 0.8785 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.5315 1.9304 -1.3789 33 1 1.7881 3.1598 -1.1001 34 1 2.0683 2.0847 -3.3177 35 1 3.4488 1.7254 -2.2530 36 1 2.1940 0.4937 -2.5297 37 1 0.4952 2.0216 1.2978 38 1 1.8624 3.1490 1.1301 39 1 0.0716 2.7625 4.0918 40 1 0.9428 3.6088 2.7958 41 1 1.3360 3.8089 5.7953 42 1 1.0869 5.1133 4.6107 43 1 3.3613 5.3172 4.8947 44 1 3.3542 4.0860 3.6058 45 1 4.9236 0.3164 5.8172 46 1 4.1320 1.3001 7.0721 47 1 6.2264 2.8191 5.9399 48 1 7.7661 3.6005 6.2883 49 1 2.8035 0.3213 4.5890 50 1 1.9650 1.4651 5.6643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201688488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = -45.360409 kcal Electronic energy + Delta-G solvation = -27897.265133 eV Core-core repulsion = 24153.818320 eV Total energy + Delta-G solvation = -3743.446812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76394 -39.05761 -37.61547 -35.70196 -34.73732 -33.01039 -31.74167 -30.97122 -30.71887 -28.79293 -26.98529 -26.21793 -24.58390 -24.06199 -22.64969 -21.78090 -21.03932 -20.44978 -18.95783 -17.48753 -17.23467 -16.70544 -16.61842 -16.41749 -16.03585 -15.49627 -15.10060 -14.83589 -14.36344 -14.05017 -13.77749 -13.65567 -13.57137 -13.35724 -13.15199 -12.93167 -12.72944 -12.55251 -12.45395 -12.24645 -12.18111 -11.97699 -11.77896 -11.57106 -11.42201 -11.29692 -11.01545 -10.78535 -10.63985 -10.47519 -10.28941 -9.91106 -9.72672 -9.43982 -9.10318 -8.78153 -8.60249 -8.47175 -6.86820 -5.98677 -2.96495 2.52849 2.73974 3.58711 3.63188 3.63384 3.80453 3.91591 4.28713 4.53253 4.59982 4.63360 4.71881 4.76963 4.86333 4.89239 4.93338 4.97552 5.04733 5.16492 5.21077 5.23294 5.27735 5.30923 5.39047 5.40570 5.45909 5.57539 5.61798 5.69354 5.72610 5.74747 5.79805 5.87995 5.93367 5.95435 6.06017 6.10216 6.19556 6.46362 6.64112 6.68554 6.76085 6.81261 7.21434 7.89978 7.97025 8.13404 8.88771 9.36709 10.23258 10.39462 11.50484 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003024 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.424881 B = 9257.378151 C = 9849.512085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 N -0.519 5.519 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.033 3.967 7 C 0.508 3.492 8 O -0.512 6.512 9 N -0.613 5.613 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.370 6.370 14 C 0.088 3.912 15 H 0.051 0.949 16 C 0.172 3.828 17 N -0.737 5.737 18 C -0.329 4.329 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.084 3.916 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.026 0.974 47 H 0.370 0.630 48 H 0.255 0.745 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.734 0.354 -15.712 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.088 4.088 3 N -0.242 5.242 4 C -0.082 4.082 5 C -0.204 4.204 6 C -0.098 4.098 7 C 0.295 3.705 8 O -0.386 6.386 9 N -0.347 5.347 10 C -0.016 4.016 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.288 6.288 14 C 0.028 3.972 15 H 0.069 0.931 16 C 0.044 3.956 17 N -0.382 5.382 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.591 5.591 22 Si 0.912 3.088 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.040 4.040 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.204 0.796 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.339 -0.100 -14.729 25.113 hybrid contribution -2.690 0.059 -1.161 2.930 sum -23.029 -0.041 -15.891 27.979 Atomic orbital electron populations 1.22454 0.98810 1.02522 1.01469 1.22381 0.92040 0.89761 1.04571 1.61920 1.59628 1.02404 1.00282 1.22171 0.97657 0.98268 0.90106 1.21752 1.01376 1.01118 0.96191 1.22085 0.98555 0.99200 0.89955 1.20582 0.82016 0.83844 0.84103 1.90700 1.35021 1.27717 1.85205 1.47963 1.46568 1.33448 1.06766 1.21979 0.92289 0.86863 1.00506 1.22507 0.98177 0.99195 1.00620 1.22117 0.90528 0.93620 0.94097 1.86432 1.78479 1.21129 1.42721 1.22304 0.93567 0.82807 0.98539 0.93137 1.20544 0.87386 0.93729 0.93935 1.42204 1.17401 1.30888 1.47740 1.20033 1.00601 1.09507 1.15846 0.91834 1.25763 0.97488 0.97508 1.03681 1.70846 1.38897 1.22494 1.26862 0.83231 0.76004 0.74780 0.74763 1.21084 1.22344 1.22316 1.22387 0.94954 0.99058 0.87581 0.92495 0.91852 0.92854 0.90448 0.88561 0.94228 0.90983 0.92372 0.91648 0.92630 0.91663 0.88137 0.91505 0.90213 0.89890 0.89663 0.89284 0.93506 0.94742 0.95597 0.79620 0.93337 0.88893 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 9.28 37.16 0.34 -1.19 16 2 C 0.04 0.41 5.57 -3.82 -0.02 0.39 16 3 N -0.52 -5.47 4.41 -236.07 -1.04 -6.51 16 4 C 0.05 0.36 5.55 -3.83 -0.02 0.34 16 5 C -0.15 -1.13 9.96 37.16 0.37 -0.76 16 6 C 0.03 0.32 3.56 -4.97 -0.02 0.30 16 7 C 0.51 6.74 7.34 -10.99 -0.08 6.66 16 8 O -0.51 -8.92 13.75 5.56 0.08 -8.84 16 9 N -0.61 -7.43 2.19 -172.41 -0.38 -7.81 16 10 C 0.11 0.89 6.00 -3.20 -0.02 0.87 16 11 C -0.17 -1.56 5.78 -27.18 -0.16 -1.71 16 12 C 0.07 0.96 6.37 36.42 0.23 1.19 16 13 O -0.37 -6.68 9.18 -26.55 -0.24 -6.92 16 14 C 0.09 1.62 2.74 -25.73 -0.07 1.55 16 15 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 16 C 0.17 3.82 5.95 -4.04 -0.02 3.80 16 17 N -0.74 -20.26 5.49 -59.91 -0.33 -20.59 16 18 C -0.33 -9.89 9.99 -15.06 -0.15 -10.04 16 19 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.05 -1.44 5.50 -17.43 -0.10 -1.54 16 21 N -0.95 -30.73 13.70 55.49 0.76 -29.97 16 22 Si 1.08 27.08 29.92 -169.99 -5.09 21.99 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.08 1.22 4.87 -3.78 -0.02 1.21 16 27 H 0.06 0.40 6.29 -51.93 -0.33 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 6.25 -51.93 -0.32 0.10 16 30 H 0.08 0.76 6.60 -51.93 -0.34 0.41 16 31 H 0.10 1.26 5.86 -51.93 -0.30 0.95 16 32 H 0.04 0.27 5.89 -51.93 -0.31 -0.03 16 33 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.43 6.71 -51.93 -0.35 0.08 16 37 H 0.07 0.50 5.92 -51.93 -0.31 0.19 16 38 H 0.10 0.82 7.13 -51.93 -0.37 0.45 16 39 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.08 0.50 5.88 -51.93 -0.31 0.19 16 41 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.37 10.56 6.36 -40.82 -0.26 10.30 16 48 H 0.26 8.26 6.77 -40.82 -0.28 7.99 16 49 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 50 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -36.41 377.78 -8.76 -45.17 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.49 Total: 6.71 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.27 Total: 1.07 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.99 Total: -64.88 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.17 Total: -15.76 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -5.09 Total: 21.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.41 -8.76 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201688488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.190 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds