Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46911 * 2 1 4 4 C 1.46894 * 111.00649 * 297.56177 * 3 2 1 5 5 C 1.52996 * 109.47269 * 288.27428 * 4 3 2 6 6 C 1.46910 * 110.99930 * 61.52023 * 3 2 1 7 7 C 1.50699 * 109.47069 * 66.03983 * 6 3 2 8 8 O 1.21279 * 120.00105 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99464 * 179.97438 * 7 6 3 10 10 C 1.47505 * 118.76222 * 0.02562 * 9 7 6 11 11 C 1.53568 * 111.03069 * 221.62253 * 10 9 7 12 12 C 1.51534 * 109.57963 * 39.97762 * 11 10 9 13 13 O 1.42160 * 108.76394 * 268.59908 * 12 11 10 14 14 C 1.38019 * 119.43349 * 87.22084 * 13 12 11 15 15 H 1.08997 * 109.46926 * 56.57562 * 14 13 12 16 16 C 1.53001 * 109.46605 * 176.57234 * 14 13 12 17 17 N 1.46503 * 109.47333 * 300.00168 * 16 14 13 18 18 C 1.36934 * 120.00018 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99685 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00253 * 359.73267 * 20 18 17 22 22 Si 1.86806 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47126 * 179.72965 * 22 20 18 24 24 H 1.48507 * 109.46947 * 299.72869 * 22 20 18 25 25 H 1.48495 * 109.47185 * 59.72484 * 22 20 18 26 26 C 1.45127 * 118.75827 * 179.97438 * 9 7 6 27 27 H 1.09001 * 109.47379 * 61.25936 * 1 2 3 28 28 H 1.09001 * 109.47065 * 181.26500 * 1 2 3 29 29 H 1.09002 * 109.46801 * 301.26523 * 1 2 3 30 30 H 1.08999 * 109.46664 * 240.00998 * 2 1 3 31 31 H 1.08992 * 109.47275 * 120.00315 * 2 1 3 32 32 H 1.09006 * 109.46875 * 48.26796 * 4 3 2 33 33 H 1.09001 * 109.47760 * 168.26926 * 4 3 2 34 34 H 1.08994 * 109.47320 * 179.87780 * 5 4 3 35 35 H 1.09003 * 109.46673 * 299.87889 * 5 4 3 36 36 H 1.08998 * 109.47607 * 59.87302 * 5 4 3 37 37 H 1.08999 * 109.46311 * 306.03963 * 6 3 2 38 38 H 1.09000 * 109.46693 * 186.04593 * 6 3 2 39 39 H 1.09007 * 109.16652 * 101.22183 * 10 9 7 40 40 H 1.09000 * 109.16510 * 342.02291 * 10 9 7 41 41 H 1.09003 * 109.45372 * 279.94299 * 11 10 9 42 42 H 1.08998 * 109.45483 * 160.00942 * 11 10 9 43 43 H 1.09001 * 109.59199 * 148.81484 * 12 11 10 44 44 H 1.08999 * 109.58843 * 28.38608 * 12 11 10 45 45 H 1.09001 * 109.46597 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47211 * 60.00502 * 16 14 13 47 47 H 0.96996 * 119.99699 * 0.02562 * 17 16 14 48 48 H 0.97001 * 120.00029 * 0.27102 * 21 20 18 49 49 H 1.09003 * 109.45687 * 330.69318 * 26 9 7 50 50 H 1.09002 * 109.46547 * 210.73217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5969 2.0929 -1.2157 5 6 2.3835 1.5609 -2.4153 6 6 1.5785 2.0993 1.2056 7 6 2.2312 1.4882 2.4186 8 8 2.9895 0.5503 2.2915 9 7 1.9729 1.9846 3.6447 10 6 1.0468 3.1261 3.7676 11 6 1.5670 4.1507 4.7864 12 6 3.0674 4.3001 4.6353 13 8 3.7089 3.3810 5.5098 14 6 3.9581 2.0943 5.0772 15 1 4.5524 2.1268 4.1641 16 6 4.7263 1.3325 6.1590 17 7 5.9962 2.0123 6.4268 18 6 6.8575 1.5095 7.3650 19 1 6.6009 0.6114 7.9074 20 6 8.0608 2.1533 7.6183 21 7 8.3763 3.2442 6.9529 22 14 9.2362 1.4670 8.8977 23 1 10.4434 2.3283 8.9734 24 1 8.5647 1.4383 10.2220 25 1 9.6346 0.0886 8.5150 26 6 2.6156 1.3752 4.7944 27 1 -0.3634 0.4941 -0.9011 28 1 -0.3633 -1.0274 0.0227 29 1 -0.3633 0.5334 0.8785 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.5315 1.9304 -1.3789 33 1 1.7881 3.1598 -1.1001 34 1 2.0683 2.0847 -3.3177 35 1 3.4488 1.7254 -2.2530 36 1 2.1940 0.4937 -2.5297 37 1 0.4952 2.0216 1.2978 38 1 1.8624 3.1490 1.1301 39 1 0.0716 2.7625 4.0918 40 1 0.9428 3.6088 2.7958 41 1 1.3360 3.8089 5.7953 42 1 1.0869 5.1133 4.6107 43 1 3.3613 5.3172 4.8947 44 1 3.3542 4.0860 3.6058 45 1 4.9236 0.3164 5.8172 46 1 4.1320 1.3001 7.0721 47 1 6.2264 2.8191 5.9399 48 1 7.7661 3.6005 6.2883 49 1 2.8035 0.3213 4.5890 50 1 1.9650 1.4651 5.6643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201688488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = -72.093309 kcal Electronic energy + Delta-G solvation = -27898.424358 eV Core-core repulsion = 24153.818320 eV Total energy + Delta-G solvation = -3744.606038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80455 -40.14535 -38.53779 -37.11592 -36.37686 -34.48021 -32.59861 -32.38370 -31.68810 -30.10250 -28.18816 -27.11156 -26.14328 -24.90225 -24.42996 -22.92165 -22.37453 -21.20955 -19.90246 -19.41404 -18.44066 -17.89646 -17.62662 -17.53559 -17.11090 -16.50692 -16.30101 -15.93668 -15.72020 -15.46913 -15.10519 -14.96551 -14.81335 -14.54273 -14.13565 -13.95635 -13.89627 -13.64592 -13.37263 -13.08895 -13.01919 -12.84313 -12.76856 -12.71841 -12.59204 -12.42925 -12.30536 -12.09856 -11.96843 -11.87718 -11.61531 -11.45982 -11.30973 -10.98559 -10.77261 -10.62188 -9.69212 -9.19804 -9.15084 -8.43369 -5.36152 1.53977 1.57018 1.68702 1.82309 1.85102 2.63058 2.70794 2.93009 3.38405 3.44512 3.52775 3.79644 3.91016 3.96075 3.99208 4.00872 4.06740 4.16500 4.23099 4.24507 4.29846 4.34497 4.39991 4.42850 4.44364 4.53643 4.61769 4.65709 4.67564 4.76738 4.78383 4.81535 4.97016 4.99504 5.06680 5.07063 5.12251 5.15768 5.21467 5.42295 5.48476 5.53365 5.94885 6.13634 6.30956 6.45433 6.66149 7.05801 7.15395 7.95863 8.08931 9.08521 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003024 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.424881 B = 9257.378151 C = 9849.512085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.043 3.957 3 N -0.546 5.546 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.041 3.959 7 C 0.500 3.500 8 O -0.565 6.565 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.399 6.399 14 C 0.106 3.894 15 H 0.017 0.983 16 C 0.168 3.832 17 N -0.751 5.751 18 C -0.339 4.339 19 H 0.068 0.932 20 C -0.107 4.107 21 N -0.973 5.973 22 Si 1.134 2.866 23 H -0.290 1.290 24 H -0.274 1.274 25 H -0.277 1.277 26 C 0.098 3.902 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.361 0.639 48 H 0.241 0.759 49 H 0.077 0.923 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.601 1.195 -16.118 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.085 4.085 3 N -0.271 5.271 4 C -0.080 4.080 5 C -0.204 4.204 6 C -0.090 4.090 7 C 0.289 3.711 8 O -0.443 6.443 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.194 4.194 12 C -0.013 4.013 13 O -0.318 6.318 14 C 0.046 3.954 15 H 0.035 0.965 16 C 0.041 3.959 17 N -0.396 5.396 18 C -0.470 4.470 19 H 0.086 0.914 20 C -0.297 4.297 21 N -0.621 5.621 22 Si 0.957 3.043 23 H -0.216 1.216 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.026 4.026 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.141 0.859 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.192 0.808 48 H 0.051 0.949 49 H 0.095 0.905 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.292 0.751 -15.154 27.798 hybrid contribution -1.825 -0.168 -1.080 2.128 sum -25.117 0.583 -16.234 29.913 Atomic orbital electron populations 1.22356 0.96607 1.03012 1.02283 1.22223 0.93790 0.89753 1.02735 1.61853 1.60949 1.02733 1.01559 1.22232 0.98514 0.98492 0.88742 1.21753 1.00214 1.01177 0.97225 1.22119 0.99677 0.99433 0.87758 1.21393 0.81301 0.83168 0.85275 1.90686 1.37427 1.30156 1.85999 1.48077 1.46498 1.34232 1.05648 1.22341 0.92172 0.85417 1.02055 1.22429 0.95021 1.01476 1.00479 1.22435 0.93145 0.92612 0.93072 1.86350 1.79684 1.21307 1.44492 1.21869 0.94768 0.83583 0.95164 0.96544 1.20680 0.85972 0.93778 0.95436 1.42420 1.18994 1.30847 1.47325 1.20447 1.01173 1.09498 1.15902 0.91356 1.27407 0.99673 0.97276 1.05363 1.70974 1.39075 1.24110 1.27908 0.82584 0.73782 0.74767 0.73184 1.21600 1.20001 1.20315 1.22023 0.93411 0.97761 0.89452 0.90987 0.91624 0.92490 0.90748 0.92004 0.92464 0.89856 0.90445 0.93648 0.93100 0.88715 0.86148 0.88768 0.87177 0.90852 0.85900 0.88706 0.93915 0.95188 0.95070 0.80774 0.94866 0.90498 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.28 71.98 0.67 -1.84 16 2 C 0.04 0.86 5.57 86.31 0.48 1.35 16 3 N -0.55 -10.85 4.41 -900.79 -3.97 -14.82 16 4 C 0.05 0.63 5.55 86.30 0.48 1.11 16 5 C -0.15 -2.06 9.96 71.98 0.72 -1.34 16 6 C 0.04 0.68 3.56 85.55 0.30 0.98 16 7 C 0.50 12.97 7.34 87.66 0.64 13.61 16 8 O -0.56 -20.55 13.75 -3.03 -0.04 -20.59 16 9 N -0.61 -13.96 2.19 -817.77 -1.79 -15.75 16 10 C 0.10 1.30 6.00 86.38 0.52 1.82 16 11 C -0.16 -2.41 5.78 30.30 0.18 -2.23 16 12 C 0.06 1.59 6.37 71.50 0.46 2.05 16 13 O -0.40 -14.67 9.18 -117.91 -1.08 -15.76 16 14 C 0.11 4.07 2.74 31.24 0.09 4.15 16 15 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 16 C 0.17 7.77 5.95 86.38 0.51 8.28 16 17 N -0.75 -42.92 5.49 -343.45 -1.88 -44.81 16 18 C -0.34 -20.79 9.99 84.03 0.84 -19.95 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.11 -6.61 5.50 84.86 0.47 -6.14 16 21 N -0.97 -64.85 13.70 21.65 0.30 -64.55 16 22 Si 1.13 54.64 29.92 68.60 2.05 56.69 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.10 2.88 4.87 87.29 0.43 3.31 16 27 H 0.07 0.77 6.29 -2.39 -0.02 0.75 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.73 6.25 -2.39 -0.01 0.71 16 30 H 0.07 1.48 6.60 -2.39 -0.02 1.46 16 31 H 0.06 1.69 5.86 -2.39 -0.01 1.68 16 32 H 0.06 0.58 5.89 -2.38 -0.01 0.56 16 33 H 0.08 0.93 7.81 -2.39 -0.02 0.91 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.75 6.71 -2.39 -0.02 0.73 16 37 H 0.10 1.05 5.92 -2.39 -0.01 1.03 16 38 H 0.12 1.54 7.13 -2.39 -0.02 1.52 16 39 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.11 0.80 5.88 -2.39 -0.01 0.78 16 41 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.10 7.40 -2.39 -0.02 1.08 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.36 21.63 6.36 -92.71 -0.59 21.04 16 48 H 0.24 16.26 6.77 -92.71 -0.63 15.63 16 49 H 0.08 2.50 7.27 -2.39 -0.02 2.48 16 50 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 Total: -1.00 -83.68 377.78 0.83 -82.85 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.48 Total: 31.59 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.77 Total: 5.16 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -7.35 Total: -139.94 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.12 Total: -36.35 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 2.05 Total: 56.69 kcal Total: -83.68 0.83 -82.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201688488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.754 kcal (2) G-P(sol) polarization free energy of solvation -83.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds