Wall clock time and date at job start Tue Mar 31 2020 11:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47358 * 2 1 4 4 C 1.46903 * 111.00199 * 66.04743 * 3 2 1 5 5 C 1.46904 * 111.00256 * 190.00071 * 3 2 1 6 6 C 1.53005 * 109.47026 * 59.99969 * 5 3 2 7 7 C 1.53006 * 109.46922 * 300.00086 * 5 3 2 8 8 C 1.50694 * 109.47270 * 179.97438 * 5 3 2 9 9 O 1.21284 * 119.99963 * 144.99628 * 8 5 3 10 10 N 1.34772 * 120.00111 * 325.00427 * 8 5 3 11 11 C 1.46498 * 120.00049 * 179.97438 * 10 8 5 12 12 H 1.09005 * 110.78011 * 31.75638 * 11 10 8 13 13 C 1.54330 * 110.72074 * 268.52038 * 11 10 8 14 14 N 1.47022 * 107.27093 * 219.44387 * 13 11 10 15 15 C 1.36938 * 125.64738 * 178.90551 * 14 13 11 16 16 H 1.08003 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99784 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46730 * 90.00522 * 19 17 15 21 21 H 1.48501 * 109.47019 * 210.00209 * 19 17 15 22 22 H 1.48498 * 109.47025 * 330.00540 * 19 17 15 23 23 C 1.47523 * 108.71559 * 358.93837 * 14 13 11 24 24 C 1.54909 * 104.78433 * 24.12363 * 23 14 13 25 25 H 1.09002 * 111.00594 * 81.08595 * 24 23 14 26 26 O 1.42900 * 111.00614 * 204.90170 * 24 23 14 27 27 C 1.42900 * 113.99837 * 265.41540 * 26 24 23 28 28 H 1.08993 * 109.47112 * 60.00054 * 1 2 3 29 29 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47118 * 299.99653 * 1 2 3 31 31 H 1.09000 * 109.47292 * 239.99654 * 2 1 3 32 32 H 1.09001 * 109.47133 * 120.00332 * 2 1 3 33 33 H 1.08997 * 109.47051 * 183.96007 * 4 3 2 34 34 H 1.08997 * 109.46854 * 303.95456 * 4 3 2 35 35 H 1.08996 * 109.47110 * 63.95286 * 4 3 2 36 36 H 1.08994 * 109.47131 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.46962 * 300.00154 * 6 5 3 38 38 H 1.08995 * 109.47173 * 59.99758 * 6 5 3 39 39 H 1.08993 * 109.46904 * 299.99480 * 7 5 3 40 40 H 1.09003 * 109.46954 * 60.00158 * 7 5 3 41 41 H 1.09004 * 109.46670 * 179.97438 * 7 5 3 42 42 H 0.97001 * 120.00101 * 359.97438 * 10 8 5 43 43 H 1.08998 * 109.87833 * 338.86150 * 13 11 10 44 44 H 1.08997 * 109.88366 * 100.02558 * 13 11 10 45 45 H 0.96998 * 120.00469 * 180.02562 * 18 17 15 46 46 H 1.09001 * 110.37251 * 265.30968 * 23 14 13 47 47 H 1.09004 * 110.41044 * 142.95250 * 23 14 13 48 48 H 1.09004 * 109.47030 * 59.99812 * 27 26 24 49 49 H 1.09000 * 109.47275 * 179.97438 * 27 26 24 50 50 H 1.08994 * 109.47462 * 300.00071 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4685 1.4311 -0.2382 6 6 3.7825 0.7997 -1.5960 7 6 4.1916 0.6550 0.8646 8 6 3.9333 2.8646 -0.2318 9 8 5.0251 3.1461 0.2149 10 7 3.1356 3.8338 -0.7223 11 6 3.5871 5.2274 -0.7156 12 1 4.6693 5.2838 -0.8334 13 6 3.1409 5.9398 0.5787 14 7 2.7318 7.3024 0.2081 15 6 2.2492 8.2525 1.0682 16 1 2.1432 8.0259 2.1188 17 6 1.8973 9.5071 0.5898 18 7 2.0270 9.7835 -0.6905 19 14 1.2383 10.8029 1.7630 20 1 2.3679 11.6002 2.3049 21 1 0.3036 11.6992 1.0361 22 1 0.5198 10.1394 2.8804 23 6 2.9264 7.4767 -1.2438 24 6 2.8710 6.0420 -1.8251 25 1 1.8401 5.7103 -1.9495 26 8 3.5845 5.9619 -3.0607 27 6 2.7637 6.1325 -4.2179 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9824 3.1098 1.1987 34 1 0.5920 2.0179 1.4052 35 1 2.1770 1.5790 2.0859 36 1 4.8576 0.8335 -1.7726 37 1 3.4463 -0.2371 -1.6011 38 1 3.2674 1.3525 -2.3816 39 1 3.9679 1.1049 1.8318 40 1 3.8554 -0.3818 0.8594 41 1 5.2666 0.6889 0.6876 42 1 2.2624 3.6086 -1.0799 43 1 2.2997 5.4081 1.0232 44 1 3.9708 5.9808 1.2842 45 1 1.7814 10.6604 -1.0247 46 1 3.8970 7.9302 -1.4448 47 1 2.1271 8.0874 -1.6639 48 1 2.2874 7.1124 -4.1844 49 1 3.3795 6.0587 -5.1143 50 1 1.9981 5.3569 -4.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212487337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:19 Heat of formation + Delta-G solvation = -36.304897 kcal Electronic energy + Delta-G solvation = -28539.750336 eV Core-core repulsion = 24796.696200 eV Total energy + Delta-G solvation = -3743.054136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53629 -38.54643 -37.46538 -35.87403 -33.98632 -32.97814 -31.69343 -30.27936 -28.79535 -27.56054 -27.08640 -26.06019 -25.68814 -24.59470 -23.39182 -21.25074 -20.54799 -19.95626 -19.07578 -17.46668 -16.92803 -16.39971 -15.97920 -15.47616 -15.33979 -15.02310 -14.52288 -14.32758 -14.27582 -14.20113 -13.91768 -13.70809 -13.20945 -12.89964 -12.64744 -12.57191 -12.34498 -12.28615 -12.15873 -12.00610 -11.84664 -11.70150 -11.48707 -11.41764 -11.27451 -11.22957 -10.99356 -10.87062 -10.82655 -10.74277 -10.17991 -9.87364 -9.79172 -9.55855 -9.01359 -8.69316 -8.60370 -8.50870 -6.88659 -5.68471 -3.11473 2.79508 3.36800 3.39924 3.44559 3.46274 3.62954 4.16889 4.48451 4.56880 4.74913 4.83173 4.95381 5.03489 5.21382 5.24734 5.29185 5.36237 5.41716 5.44532 5.54453 5.55938 5.56491 5.63984 5.66409 5.67121 5.72271 5.73013 5.77210 5.85942 5.88948 5.98570 5.99736 6.04580 6.09387 6.13250 6.27048 6.55157 6.68718 6.73016 6.81522 6.97801 7.28536 7.56759 7.74307 7.79947 7.86520 8.27831 8.49969 9.16880 9.77476 10.40324 11.35215 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003920 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.970939 B = 7141.164759 C = 7833.027534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.005 3.995 5 C 0.089 3.911 6 C -0.137 4.137 7 C -0.166 4.166 8 C 0.528 3.472 9 O -0.542 6.542 10 N -0.703 5.703 11 C 0.133 3.867 12 H 0.101 0.899 13 C 0.132 3.868 14 N -0.600 5.600 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.141 3.859 24 C 0.055 3.945 25 H 0.066 0.934 26 O -0.381 6.381 27 C 0.035 3.965 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.406 0.594 43 H 0.029 0.971 44 H 0.031 0.969 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.112 0.888 48 H 0.046 0.954 49 H 0.077 0.923 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -20.016 -3.411 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.255 5.255 4 C -0.143 4.143 5 C -0.003 4.003 6 C -0.194 4.194 7 C -0.225 4.225 8 C 0.313 3.687 9 O -0.419 6.419 10 N -0.353 5.353 11 C 0.028 3.972 12 H 0.119 0.881 13 C 0.005 3.995 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.015 3.985 24 C -0.004 4.004 25 H 0.084 0.916 26 O -0.299 6.299 27 C -0.061 4.061 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.241 0.759 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.129 0.871 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.788 -19.359 -3.496 19.753 hybrid contribution -0.609 0.231 1.096 1.275 sum -2.397 -19.127 -2.400 19.426 Atomic orbital electron populations 1.21810 0.94672 1.01443 1.02764 1.22193 0.96066 0.88816 1.01162 1.62290 1.11248 1.16484 1.35440 1.22679 1.01853 1.00113 0.89631 1.21301 0.88152 0.93244 0.97653 1.21854 1.02360 1.00759 0.94465 1.22250 1.02262 0.99426 0.98610 1.20169 0.84715 0.86556 0.77264 1.90708 1.21582 1.83148 1.46424 1.46019 1.20513 1.06660 1.62147 1.22154 1.00563 0.79055 0.95395 0.88092 1.21596 0.97064 0.87065 0.93792 1.44319 1.75485 1.08708 1.04266 1.19086 1.34721 0.91130 0.90091 0.90262 1.24790 1.01765 0.97528 0.96417 1.69757 1.54176 1.21430 1.11741 0.86048 0.78357 0.81393 0.79546 1.21551 1.21630 1.20667 1.22320 1.02256 0.90096 0.83784 1.24022 0.93797 0.99415 0.83160 0.91565 1.87843 1.35177 1.93251 1.13632 1.22691 0.95156 1.00009 0.88289 0.91698 0.92424 0.92527 0.90222 0.94487 0.90291 0.90552 0.94968 0.91384 0.91377 0.91157 0.91960 0.91928 0.90719 0.75851 0.95316 0.95091 0.93629 0.95624 0.87061 0.93546 0.90396 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.84 37.16 0.37 -0.73 16 2 C 0.05 0.37 4.78 -3.83 -0.02 0.35 16 3 N -0.53 -5.45 3.86 -228.51 -0.88 -6.33 16 4 C 0.01 0.06 8.63 60.07 0.52 0.58 16 5 C 0.09 1.04 0.64 -132.75 -0.08 0.95 16 6 C -0.14 -1.34 8.25 37.16 0.31 -1.04 16 7 C -0.17 -1.84 7.32 37.16 0.27 -1.57 16 8 C 0.53 8.29 5.45 -10.99 -0.06 8.23 16 9 O -0.54 -10.57 15.74 5.55 0.09 -10.48 16 10 N -0.70 -11.05 3.95 -52.03 -0.21 -11.26 16 11 C 0.13 2.57 3.05 -66.09 -0.20 2.37 16 12 H 0.10 2.17 7.55 -51.93 -0.39 1.78 16 13 C 0.13 2.89 6.99 -3.06 -0.02 2.87 16 14 N -0.60 -15.47 3.40 -169.99 -0.58 -16.05 16 15 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 16 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 19 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.14 3.46 5.63 -2.47 -0.01 3.45 16 24 C 0.06 1.09 3.14 -24.58 -0.08 1.01 16 25 H 0.07 1.22 7.73 -51.93 -0.40 0.82 16 26 O -0.38 -7.12 10.51 -35.23 -0.37 -7.49 16 27 C 0.04 0.52 10.87 101.05 1.10 1.62 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 6.47 -51.93 -0.34 0.10 16 31 H 0.08 0.58 5.83 -51.93 -0.30 0.28 16 32 H 0.04 0.30 6.86 -51.93 -0.36 -0.06 16 33 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 34 H 0.08 0.76 6.30 -51.93 -0.33 0.43 16 35 H 0.03 0.35 6.40 -51.93 -0.33 0.02 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 40 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 41 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 42 H 0.41 5.72 7.87 -40.82 -0.32 5.40 16 43 H 0.03 0.61 7.75 -51.93 -0.40 0.21 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.11 3.00 5.88 -51.93 -0.31 2.69 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -31.30 379.98 -7.40 -38.71 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.55 Total: 4.90 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 1.83 Total: 11.38 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -1.11 Total: -59.66 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.28 Total: -17.97 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.30 -7.40 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212487337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.401 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds