Wall clock time and date at job start Tue Mar 31 2020 11:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47358 * 2 1 4 4 C 1.46903 * 111.00199 * 66.04743 * 3 2 1 5 5 C 1.46904 * 111.00256 * 190.00071 * 3 2 1 6 6 C 1.53005 * 109.47026 * 59.99969 * 5 3 2 7 7 C 1.53006 * 109.46922 * 300.00086 * 5 3 2 8 8 C 1.50694 * 109.47270 * 179.97438 * 5 3 2 9 9 O 1.21284 * 119.99963 * 144.99628 * 8 5 3 10 10 N 1.34772 * 120.00111 * 325.00427 * 8 5 3 11 11 C 1.46498 * 120.00049 * 179.97438 * 10 8 5 12 12 H 1.09005 * 110.78011 * 31.75638 * 11 10 8 13 13 C 1.54330 * 110.72074 * 268.52038 * 11 10 8 14 14 N 1.47022 * 107.27093 * 219.44387 * 13 11 10 15 15 C 1.36938 * 125.64738 * 178.90551 * 14 13 11 16 16 H 1.08003 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99784 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46730 * 90.00522 * 19 17 15 21 21 H 1.48501 * 109.47019 * 210.00209 * 19 17 15 22 22 H 1.48498 * 109.47025 * 330.00540 * 19 17 15 23 23 C 1.47523 * 108.71559 * 358.93837 * 14 13 11 24 24 C 1.54909 * 104.78433 * 24.12363 * 23 14 13 25 25 H 1.09002 * 111.00594 * 81.08595 * 24 23 14 26 26 O 1.42900 * 111.00614 * 204.90170 * 24 23 14 27 27 C 1.42900 * 113.99837 * 265.41540 * 26 24 23 28 28 H 1.08993 * 109.47112 * 60.00054 * 1 2 3 29 29 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47118 * 299.99653 * 1 2 3 31 31 H 1.09000 * 109.47292 * 239.99654 * 2 1 3 32 32 H 1.09001 * 109.47133 * 120.00332 * 2 1 3 33 33 H 1.08997 * 109.47051 * 183.96007 * 4 3 2 34 34 H 1.08997 * 109.46854 * 303.95456 * 4 3 2 35 35 H 1.08996 * 109.47110 * 63.95286 * 4 3 2 36 36 H 1.08994 * 109.47131 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.46962 * 300.00154 * 6 5 3 38 38 H 1.08995 * 109.47173 * 59.99758 * 6 5 3 39 39 H 1.08993 * 109.46904 * 299.99480 * 7 5 3 40 40 H 1.09003 * 109.46954 * 60.00158 * 7 5 3 41 41 H 1.09004 * 109.46670 * 179.97438 * 7 5 3 42 42 H 0.97001 * 120.00101 * 359.97438 * 10 8 5 43 43 H 1.08998 * 109.87833 * 338.86150 * 13 11 10 44 44 H 1.08997 * 109.88366 * 100.02558 * 13 11 10 45 45 H 0.96998 * 120.00469 * 180.02562 * 18 17 15 46 46 H 1.09001 * 110.37251 * 265.30968 * 23 14 13 47 47 H 1.09004 * 110.41044 * 142.95250 * 23 14 13 48 48 H 1.09004 * 109.47030 * 59.99812 * 27 26 24 49 49 H 1.09000 * 109.47275 * 179.97438 * 27 26 24 50 50 H 1.08994 * 109.47462 * 300.00071 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4685 1.4311 -0.2382 6 6 3.7825 0.7997 -1.5960 7 6 4.1916 0.6550 0.8646 8 6 3.9333 2.8646 -0.2318 9 8 5.0251 3.1461 0.2149 10 7 3.1356 3.8338 -0.7223 11 6 3.5871 5.2274 -0.7156 12 1 4.6693 5.2838 -0.8334 13 6 3.1409 5.9398 0.5787 14 7 2.7318 7.3024 0.2081 15 6 2.2492 8.2525 1.0682 16 1 2.1432 8.0259 2.1188 17 6 1.8973 9.5071 0.5898 18 7 2.0270 9.7835 -0.6905 19 14 1.2383 10.8029 1.7630 20 1 2.3679 11.6002 2.3049 21 1 0.3036 11.6992 1.0361 22 1 0.5198 10.1394 2.8804 23 6 2.9264 7.4767 -1.2438 24 6 2.8710 6.0420 -1.8251 25 1 1.8401 5.7103 -1.9495 26 8 3.5845 5.9619 -3.0607 27 6 2.7637 6.1325 -4.2179 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9824 3.1098 1.1987 34 1 0.5920 2.0179 1.4052 35 1 2.1770 1.5790 2.0859 36 1 4.8576 0.8335 -1.7726 37 1 3.4463 -0.2371 -1.6011 38 1 3.2674 1.3525 -2.3816 39 1 3.9679 1.1049 1.8318 40 1 3.8554 -0.3818 0.8594 41 1 5.2666 0.6889 0.6876 42 1 2.2624 3.6086 -1.0799 43 1 2.2997 5.4081 1.0232 44 1 3.9708 5.9808 1.2842 45 1 1.7814 10.6604 -1.0247 46 1 3.8970 7.9302 -1.4448 47 1 2.1271 8.0874 -1.6639 48 1 2.2874 7.1124 -4.1844 49 1 3.3795 6.0587 -5.1143 50 1 1.9981 5.3569 -4.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212487337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:17 Heat of formation + Delta-G solvation = -58.773837 kcal Electronic energy + Delta-G solvation = -28540.724662 eV Core-core repulsion = 24796.696200 eV Total energy + Delta-G solvation = -3744.028462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71950 -40.03155 -38.64095 -37.51657 -35.63199 -33.87865 -33.52922 -31.05333 -30.55196 -28.96810 -28.26893 -27.52863 -26.54201 -26.20574 -24.62289 -22.48932 -22.15366 -21.57858 -20.21207 -19.08937 -18.34639 -17.89991 -17.25775 -16.91223 -16.57200 -16.12085 -15.94241 -15.77926 -15.52971 -15.44168 -15.13464 -14.95924 -14.72216 -14.37811 -13.97714 -13.73803 -13.47251 -13.36379 -13.23843 -13.13717 -13.08335 -12.96375 -12.75019 -12.73695 -12.59085 -12.50006 -12.34974 -12.29663 -12.09867 -12.04358 -11.89721 -11.56836 -11.51384 -10.88353 -10.79069 -10.53431 -10.04692 -9.37672 -8.97891 -7.80780 -5.28316 1.47027 1.49353 1.54853 1.58096 2.06654 2.45063 2.74577 2.78311 3.30048 3.50099 3.60900 3.80432 3.92280 3.96810 3.99652 4.07853 4.12951 4.28853 4.35565 4.47325 4.50202 4.55235 4.61517 4.63913 4.66267 4.66386 4.72210 4.78943 4.81500 4.87990 4.88112 4.90669 5.00908 5.04273 5.17823 5.19915 5.28487 5.28928 5.43917 5.44930 5.47895 5.67578 5.89622 6.05671 6.18060 6.30770 6.56830 7.03930 7.22892 7.68566 8.31481 9.20718 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003920 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.970939 B = 7141.164759 C = 7833.027534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.528 5.528 4 C 0.007 3.993 5 C 0.097 3.903 6 C -0.134 4.134 7 C -0.163 4.163 8 C 0.525 3.475 9 O -0.584 6.584 10 N -0.691 5.691 11 C 0.150 3.850 12 H 0.077 0.923 13 C 0.135 3.865 14 N -0.618 5.618 15 C -0.244 4.244 16 H 0.082 0.918 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.984 3.016 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.147 3.853 24 C 0.079 3.921 25 H 0.086 0.914 26 O -0.396 6.396 27 C 0.028 3.972 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.417 0.583 43 H 0.042 0.958 44 H 0.013 0.987 45 H 0.250 0.750 46 H -0.012 1.012 47 H 0.088 0.912 48 H 0.035 0.965 49 H 0.104 0.896 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -22.497 -3.830 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.254 5.254 4 C -0.141 4.141 5 C 0.004 3.996 6 C -0.191 4.191 7 C -0.222 4.222 8 C 0.312 3.688 9 O -0.463 6.463 10 N -0.342 5.342 11 C 0.044 3.956 12 H 0.095 0.905 13 C 0.008 3.992 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.100 0.900 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.192 1.192 23 C 0.021 3.979 24 C 0.019 3.981 25 H 0.104 0.896 26 O -0.314 6.314 27 C -0.068 4.068 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.255 0.745 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.106 0.894 48 H 0.053 0.947 49 H 0.122 0.878 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.375 -21.888 -3.928 22.492 hybrid contribution -0.095 0.988 1.210 1.565 sum -3.470 -20.900 -2.718 21.359 Atomic orbital electron populations 1.21788 0.93962 1.02378 1.02241 1.22321 0.96593 0.87231 1.02159 1.62322 1.10030 1.18186 1.34878 1.22620 1.02686 0.98584 0.90182 1.21249 0.89139 0.89993 0.99178 1.21876 1.02094 1.02282 0.92885 1.22241 1.01499 1.00865 0.97605 1.21010 0.83896 0.88134 0.75726 1.90691 1.23517 1.84078 1.48054 1.45827 1.21059 1.05051 1.62242 1.21648 0.99048 0.80977 0.93945 0.90502 1.21638 0.96683 0.85923 0.94932 1.44564 1.75423 1.09811 1.04739 1.19447 1.34985 0.92103 0.90715 0.89993 1.25639 1.02147 0.99435 0.98053 1.69992 1.54767 1.21549 1.13292 0.85011 0.77520 0.78523 0.77824 1.21646 1.21497 1.19232 1.22075 0.99116 0.92959 0.83737 1.23597 0.94869 0.95905 0.83720 0.89582 1.87833 1.36395 1.93054 1.14134 1.22972 0.96025 1.00323 0.87508 0.92163 0.90799 0.93093 0.88705 0.93880 0.93052 0.89170 0.94915 0.92048 0.88440 0.91113 0.93337 0.88993 0.91975 0.74484 0.94036 0.96923 0.94031 0.99439 0.89441 0.94659 0.87767 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.84 71.98 0.71 -0.96 16 2 C 0.04 0.55 4.78 86.30 0.41 0.96 16 3 N -0.53 -9.59 3.86 -876.86 -3.39 -12.98 16 4 C 0.01 0.15 8.63 127.69 1.10 1.26 16 5 C 0.10 2.08 0.64 2.78 0.00 2.09 16 6 C -0.13 -2.25 8.25 71.98 0.59 -1.66 16 7 C -0.16 -3.34 7.32 71.98 0.53 -2.81 16 8 C 0.53 16.32 5.45 87.66 0.48 16.80 16 9 O -0.58 -23.28 15.74 -3.04 -0.05 -23.33 16 10 N -0.69 -21.40 3.95 -436.91 -1.72 -23.12 16 11 C 0.15 5.92 3.05 46.18 0.14 6.06 16 12 H 0.08 3.44 7.55 -2.38 -0.02 3.42 16 13 C 0.13 6.09 6.99 86.73 0.61 6.69 16 14 N -0.62 -32.92 3.40 -691.72 -2.35 -35.27 16 15 C -0.24 -13.88 10.27 84.03 0.86 -13.02 16 16 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 18 N -0.95 -56.07 10.09 21.65 0.22 -55.85 16 19 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 C 0.15 7.51 5.63 86.84 0.49 8.00 16 24 C 0.08 3.11 3.14 31.99 0.10 3.21 16 25 H 0.09 3.07 7.73 -2.39 -0.02 3.05 16 26 O -0.40 -14.64 10.51 -148.98 -1.57 -16.20 16 27 C 0.03 0.76 10.87 113.37 1.23 1.99 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.64 6.47 -2.38 -0.02 0.63 16 31 H 0.09 0.95 5.83 -2.39 -0.01 0.93 16 32 H 0.04 0.52 6.86 -2.39 -0.02 0.51 16 33 H 0.05 1.36 5.97 -2.39 -0.01 1.34 16 34 H 0.09 1.61 6.30 -2.39 -0.02 1.60 16 35 H 0.03 0.67 6.40 -2.39 -0.02 0.66 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.08 6.20 -2.39 -0.01 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.12 6.49 -2.39 -0.02 1.11 16 40 H 0.09 1.33 6.64 -2.39 -0.02 1.31 16 41 H 0.06 1.44 7.87 -2.38 -0.02 1.42 16 42 H 0.42 11.10 7.87 -92.71 -0.73 10.37 16 43 H 0.04 1.77 7.75 -2.39 -0.02 1.75 16 44 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 47 H 0.09 4.90 5.88 -2.38 -0.01 4.89 16 48 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 Total: -1.00 -70.56 379.98 1.09 -69.47 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.20 Total: 24.05 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 7.72 Total: 25.68 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -7.24 Total: -127.22 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.61 Total: -39.53 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.56 1.09 -69.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212487337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.693 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds