Wall clock time and date at job start Tue Mar 31 2020 11:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00488 * 2 1 4 4 H 1.09008 * 110.91231 * 32.45042 * 3 2 1 5 5 C 1.54908 * 111.00574 * 268.54918 * 3 2 1 6 6 N 1.47425 * 104.92961 * 204.85979 * 5 3 2 7 7 C 1.36938 * 125.65179 * 204.15650 * 6 5 3 8 8 H 1.07995 * 120.00281 * 180.02562 * 7 6 5 9 9 C 1.38810 * 119.99650 * 0.02562 * 7 6 5 10 10 N 1.31621 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46993 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47464 * 119.99742 * 11 9 7 14 14 H 1.48496 * 109.47378 * 240.00268 * 11 9 7 15 15 C 1.47290 * 108.55742 * 24.15407 * 6 5 3 16 16 C 1.54325 * 107.30599 * 358.92448 * 15 6 5 17 17 H 1.08997 * 110.72163 * 96.18354 * 16 15 6 18 18 N 1.46497 * 110.72131 * 219.45483 * 16 15 6 19 19 C 1.34781 * 119.99953 * 268.52482 * 18 16 15 20 20 O 1.21281 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99963 * 180.02562 * 19 18 16 22 22 C 1.52996 * 109.47270 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47682 * 180.02562 * 22 21 19 24 24 C 1.52996 * 109.47682 * 179.97438 * 23 22 21 25 25 N 1.46901 * 109.47342 * 179.97438 * 24 23 22 26 26 C 1.46903 * 110.99690 * 66.04975 * 25 24 23 27 27 C 1.46902 * 111.00282 * 189.99578 * 25 24 23 28 28 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46698 * 300.00412 * 1 2 3 30 30 H 1.09002 * 109.46834 * 59.99448 * 1 2 3 31 31 H 1.09002 * 110.36632 * 323.75375 * 5 3 2 32 32 H 1.08995 * 110.36781 * 85.96612 * 5 3 2 33 33 H 0.97001 * 119.99611 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.85762 * 239.50064 * 15 6 5 35 35 H 1.08999 * 109.87327 * 118.35916 * 15 6 5 36 36 H 0.96996 * 120.00123 * 88.52155 * 18 16 15 37 37 H 1.09005 * 109.47068 * 299.99881 * 21 19 18 38 38 H 1.09005 * 109.47143 * 59.99839 * 21 19 18 39 39 H 1.09005 * 109.47029 * 299.99968 * 22 21 19 40 40 H 1.09006 * 109.47279 * 59.99360 * 22 21 19 41 41 H 1.09005 * 109.46835 * 300.00053 * 23 22 21 42 42 H 1.09006 * 109.47314 * 59.99347 * 23 22 21 43 43 H 1.09005 * 109.47029 * 299.99934 * 24 23 22 44 44 H 1.09005 * 109.47117 * 59.99853 * 24 23 22 45 45 H 1.08994 * 109.47404 * 59.99530 * 26 25 24 46 46 H 1.09001 * 109.47306 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.46647 * 299.99513 * 26 25 24 48 48 H 1.09005 * 109.46480 * 60.00206 * 27 25 24 49 49 H 1.08998 * 109.47377 * 180.02562 * 27 25 24 50 50 H 1.09005 * 109.47261 * 300.00663 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3837 2.0104 0.5464 5 6 2.2697 1.7977 -1.4457 6 7 3.3603 2.7819 -1.3218 7 6 3.6202 3.8000 -2.2000 8 1 4.4471 4.4708 -2.0196 9 6 2.8208 3.9697 -3.3220 10 7 1.8128 3.1524 -3.5416 11 14 3.1757 5.3580 -4.5204 12 1 4.3540 6.1294 -4.0493 13 1 3.4588 4.7921 -5.8639 14 1 1.9962 6.2566 -4.6003 15 6 4.1219 2.4860 -0.0963 16 6 3.4486 1.2737 0.5810 17 1 3.9551 0.3483 0.3068 18 7 3.4236 1.4408 2.0362 19 6 4.4342 0.9599 2.7873 20 8 5.3640 0.3884 2.2585 21 6 4.4081 1.1313 4.2843 22 6 5.6622 0.4997 4.8918 23 6 5.6355 0.6731 6.4117 24 6 6.8893 0.0410 7.0193 25 7 6.8640 0.2080 8.4786 26 6 5.7619 -0.5571 9.0769 27 6 8.1521 -0.1710 9.0744 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.5788 0.9667 -2.0797 32 1 1.3757 2.2713 -1.8513 33 1 1.2544 3.2708 -4.3259 34 1 4.0957 3.3462 0.5727 35 1 5.1535 2.2429 -0.3507 36 1 2.6797 1.8975 2.4592 37 1 4.3812 2.1934 4.5280 38 1 3.5224 0.6427 4.6906 39 1 5.6887 -0.5624 4.6481 40 1 6.5482 0.9878 4.4855 41 1 5.6088 1.7351 6.6558 42 1 4.7496 0.1847 6.8177 43 1 6.9156 -1.0210 6.7752 44 1 7.7755 0.5291 6.6135 45 1 5.8881 -1.6153 8.8483 46 1 5.7659 -0.4154 10.1576 47 1 4.8134 -0.2078 8.6686 48 1 8.9415 0.4590 8.6642 49 1 8.1056 -0.0382 10.1553 50 1 8.3650 -1.2153 8.8458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213751749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:19 Heat of formation + Delta-G solvation = -56.967139 kcal Electronic energy + Delta-G solvation = -26342.755090 eV Core-core repulsion = 22598.804972 eV Total energy + Delta-G solvation = -3743.950118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.75341 -38.28132 -37.91914 -35.91840 -34.53962 -33.98658 -31.81501 -30.00522 -28.70601 -27.94428 -27.13253 -26.11397 -25.35507 -24.08414 -22.24748 -21.00404 -20.67790 -20.30580 -19.76805 -17.34304 -16.74053 -16.35028 -16.26762 -15.76501 -15.44952 -15.37218 -15.08347 -14.80700 -14.33390 -14.32836 -14.16651 -13.70511 -13.23901 -13.02926 -12.79599 -12.74197 -12.61021 -12.24070 -12.21099 -12.05911 -11.84954 -11.52376 -11.38207 -11.35601 -11.29626 -11.16164 -11.01853 -10.85216 -10.79148 -10.67096 -10.17435 -9.89447 -9.80892 -9.65000 -9.05564 -8.72204 -8.71896 -8.64017 -6.91020 -5.70650 -3.13678 2.86157 3.32425 3.37840 3.43506 3.46017 3.64526 4.12640 4.47869 4.58179 4.72545 4.76349 4.82365 4.98146 5.05402 5.12272 5.19438 5.24161 5.28047 5.34327 5.42177 5.44955 5.50888 5.51704 5.55491 5.58960 5.62063 5.64886 5.69757 5.71631 5.79341 5.86267 5.96663 6.08514 6.09337 6.20917 6.23430 6.50711 6.66164 6.67748 6.67968 6.91934 7.25109 7.54693 7.70680 7.74010 7.80469 8.25522 8.46701 9.14888 9.75079 10.38101 11.33105 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.002287 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.510348 B =12240.942964 C =13283.677315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.081 0.919 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.102 0.898 18 N -0.718 5.718 19 C 0.511 3.489 20 O -0.542 6.542 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.116 4.116 24 C 0.053 3.947 25 N -0.550 5.550 26 C 0.020 3.980 27 C 0.024 3.976 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.026 0.974 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.397 0.603 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -6.344 22.793 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.013 3.987 6 N -0.329 5.329 7 C -0.348 4.348 8 H 0.099 0.901 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.120 0.880 18 N -0.368 5.368 19 C 0.297 3.703 20 O -0.419 6.419 21 C -0.179 4.179 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.075 4.075 25 N -0.273 5.273 26 C -0.128 4.128 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.740 -6.348 22.320 23.366 hybrid contribution -0.310 0.228 -0.625 0.734 sum 2.430 -6.121 21.695 22.672 Atomic orbital electron populations 1.22692 0.81605 1.01860 1.00017 1.87843 1.19233 1.27751 1.95138 1.24024 0.92264 0.83731 1.00506 0.91649 1.22327 0.95382 0.91897 0.89101 1.44379 1.31838 1.33112 1.23566 1.19144 1.11048 1.04072 1.00583 0.90137 1.24814 0.98073 0.99387 0.98459 1.69766 1.19950 1.38633 1.28833 0.85951 0.77394 0.81039 0.80833 1.20449 1.21671 1.21730 1.21663 0.95193 0.93690 0.89184 1.22096 0.96300 1.00278 0.78171 0.87973 1.46037 1.24023 1.59162 1.07573 1.20682 0.82067 0.78137 0.89422 1.90702 1.34426 1.42260 1.74507 1.21656 1.00766 1.03379 0.92056 1.21286 0.97325 1.01821 0.93703 1.21617 0.97295 1.01840 0.94634 1.22180 0.99456 0.99062 0.86781 1.62006 1.03980 1.56451 1.04890 1.22447 0.95049 0.95355 0.99941 1.22385 0.91260 0.98742 1.00093 0.90372 0.94831 0.93421 0.95625 0.87015 0.93668 0.95198 0.94881 0.76923 0.88900 0.89162 0.91312 0.90982 0.90976 0.91942 0.94694 0.90583 0.95685 0.91569 0.90949 0.91276 0.91440 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.89 101.05 1.10 1.61 16 2 O -0.38 -7.03 10.51 -35.23 -0.37 -7.40 16 3 C 0.05 1.04 3.12 -24.58 -0.08 0.97 16 4 H 0.07 1.16 7.77 -51.92 -0.40 0.76 16 5 C 0.14 3.39 5.62 -2.53 -0.01 3.37 16 6 N -0.60 -15.51 3.40 -169.86 -0.58 -16.09 16 7 C -0.22 -6.14 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 9 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 10 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 11 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.13 2.83 7.01 -2.92 -0.02 2.81 16 16 C 0.14 2.59 3.05 -66.10 -0.20 2.39 16 17 H 0.10 2.17 7.55 -51.93 -0.39 1.78 16 18 N -0.72 -10.63 5.10 -52.03 -0.27 -10.90 16 19 C 0.51 7.54 7.83 -10.98 -0.09 7.45 16 20 O -0.54 -10.29 15.63 5.56 0.09 -10.21 16 21 C -0.14 -1.36 5.70 -27.89 -0.16 -1.52 16 22 C -0.10 -1.02 4.50 -26.73 -0.12 -1.14 16 23 C -0.12 -0.93 5.14 -26.73 -0.14 -1.07 16 24 C 0.05 0.44 4.96 -3.83 -0.02 0.42 16 25 N -0.55 -4.51 5.02 -251.25 -1.26 -5.77 16 26 C 0.02 0.14 9.32 60.07 0.56 0.70 16 27 C 0.02 0.16 9.57 60.07 0.57 0.73 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 2.99 5.86 -51.93 -0.30 2.69 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.70 8.56 -40.82 -0.35 4.35 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 43 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 44 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 45 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 47 H 0.07 0.47 6.47 -51.92 -0.34 0.14 16 48 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 49 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 50 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -32.73 398.18 -8.96 -41.69 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.26 Total: 1.76 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 1.15 Total: 10.00 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -1.55 Total: -58.79 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.28 Total: -17.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.73 -8.96 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213751749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.274 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds