Wall clock time and date at job start Tue Mar 31 2020 10:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00464 * 2 1 4 4 H 1.48495 * 109.47149 * 270.00120 * 3 2 1 5 5 H 1.48509 * 109.46743 * 30.00108 * 3 2 1 6 6 H 1.48493 * 109.47452 * 149.99966 * 3 2 1 7 7 C 1.37884 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99697 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46951 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46790 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46533 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99606 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00273 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.46489 * 120.00350 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.53968 * 35.09621 * 16 15 13 18 18 C 1.53125 * 109.50529 * 275.00429 * 16 15 13 19 19 C 1.53114 * 109.16368 * 182.40441 * 18 16 15 20 20 C 1.53037 * 109.31211 * 57.63311 * 19 18 16 21 21 N 1.46854 * 109.52285 * 300.88400 * 20 19 18 22 22 C 1.46895 * 110.99648 * 185.80147 * 21 20 19 23 23 C 1.52996 * 109.47373 * 65.74825 * 22 21 20 24 24 C 1.53000 * 109.47631 * 180.02562 * 23 22 21 25 25 O 1.42895 * 109.47364 * 179.97438 * 24 23 22 26 26 C 1.46840 * 111.23238 * 61.67711 * 21 20 19 27 27 H 0.97000 * 119.99497 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47426 * 60.00545 * 9 7 2 29 29 H 1.09000 * 109.47570 * 300.00314 * 9 7 2 30 30 H 1.08997 * 109.46969 * 60.00544 * 10 9 7 31 31 H 1.08996 * 109.47087 * 300.00060 * 10 9 7 32 32 H 1.08997 * 109.47031 * 60.00446 * 11 10 9 33 33 H 1.08996 * 109.47244 * 299.99828 * 11 10 9 34 34 H 0.96998 * 120.00620 * 0.02562 * 12 11 10 35 35 H 0.97000 * 119.99342 * 0.02562 * 15 13 12 36 36 H 1.08998 * 109.52257 * 62.49634 * 18 16 15 37 37 H 1.09007 * 109.51539 * 302.31150 * 18 16 15 38 38 H 1.09002 * 109.50377 * 177.59436 * 19 18 16 39 39 H 1.09003 * 109.50316 * 297.67431 * 19 18 16 40 40 H 1.09000 * 109.46159 * 60.85546 * 20 19 18 41 41 H 1.09000 * 109.46461 * 180.82902 * 20 19 18 42 42 H 1.09006 * 109.47095 * 185.74417 * 22 21 20 43 43 H 1.08994 * 109.47117 * 305.74495 * 22 21 20 44 44 H 1.09008 * 109.47411 * 299.99935 * 23 22 21 45 45 H 1.09003 * 109.47446 * 59.99598 * 23 22 21 46 46 H 1.09007 * 109.47097 * 300.00148 * 24 23 22 47 47 H 1.09003 * 109.47096 * 59.99307 * 24 23 22 48 48 H 0.96706 * 113.99832 * 179.97438 * 25 24 23 49 49 H 1.09001 * 109.46294 * 178.26219 * 26 21 20 50 50 H 1.09005 * 109.46534 * 58.30014 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4321 -6.1006 -0.0031 13 6 1.9828 -7.3713 -0.0032 14 8 0.7874 -7.5935 -0.0033 15 7 2.8585 -8.3958 -0.0043 16 6 2.3702 -9.7769 -0.0050 17 1 1.4560 -9.8401 -0.5952 18 6 2.0817 -10.2180 1.4327 19 6 1.6294 -11.6808 1.4286 20 6 2.7142 -12.5441 0.7805 21 7 2.9536 -12.0823 -0.5928 22 6 3.8895 -12.9729 -1.2919 23 6 3.2463 -14.3495 -1.4709 24 6 4.2213 -15.2774 -2.1985 25 8 3.6207 -16.5633 -2.3651 26 6 3.4341 -10.6949 -0.6111 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8725 -3.6048 0.8877 31 1 2.8712 -3.6040 -0.8922 32 1 0.8531 -5.0441 -0.8922 33 1 0.8538 -5.0455 0.8877 34 1 3.3858 -5.9235 -0.0027 35 1 3.8122 -8.2186 -0.0046 36 1 1.2934 -9.5941 1.8539 37 1 2.9863 -10.1180 2.0327 38 1 1.4636 -12.0133 2.4533 39 1 0.7032 -11.7737 0.8614 40 1 3.6359 -12.4620 1.3565 41 1 2.3884 -13.5841 0.7630 42 1 4.1284 -12.5538 -2.2694 43 1 4.8031 -13.0721 -0.7059 44 1 3.0073 -14.7688 -0.4935 45 1 2.3326 -14.2503 -2.0569 46 1 4.4607 -14.8584 -3.1759 47 1 5.1348 -15.3765 -1.6121 48 1 4.1837 -17.2043 -2.8205 49 1 3.6314 -10.3924 -1.6396 50 1 4.3524 -10.6208 -0.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227026394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:36 Heat of formation + Delta-G solvation = -102.473202 kcal Electronic energy + Delta-G solvation = -25535.485908 eV Core-core repulsion = 21789.562499 eV Total energy + Delta-G solvation = -3745.923409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27828 -39.11015 -37.51685 -35.77646 -34.96319 -33.58630 -33.16379 -31.55648 -31.21293 -29.46399 -26.53005 -26.18192 -23.77561 -23.28983 -22.76592 -21.37112 -20.74395 -20.35786 -20.16343 -18.03192 -17.86421 -16.80083 -16.34463 -16.28565 -15.80690 -15.43496 -15.19044 -14.70699 -14.57654 -14.47862 -14.33503 -14.23754 -13.81287 -13.61258 -13.45988 -13.31979 -12.72476 -12.27428 -12.21314 -11.80072 -11.75689 -11.72002 -11.60972 -11.51916 -11.04859 -11.01744 -10.88698 -10.75831 -10.70135 -10.58161 -10.44709 -10.04858 -9.84193 -9.42375 -9.16259 -9.11184 -8.77537 -8.58250 -8.36006 -6.00642 -4.03713 2.69043 3.31334 3.34048 3.37723 3.40397 3.42367 3.88264 4.33040 4.39419 4.45101 4.51616 4.58131 4.68685 4.70984 4.73234 4.88156 4.92760 4.97054 5.06957 5.15404 5.19808 5.31902 5.35102 5.35791 5.53026 5.62297 5.67656 5.71421 5.76977 5.81824 5.83980 6.03263 6.10029 6.20912 6.42227 6.56015 6.61826 6.64580 6.68922 6.83451 7.04389 7.10404 7.10902 7.65325 7.78416 7.98387 8.18320 8.39345 8.79422 9.02994 9.60330 11.10621 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.037287 B = 0.001650 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.757403 B =16964.661152 C =17306.053377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.702 3.298 14 O -0.590 6.590 15 N -0.748 5.748 16 C 0.169 3.831 17 H 0.098 0.902 18 C -0.133 4.133 19 C -0.115 4.115 20 C 0.050 3.950 21 N -0.533 5.533 22 C 0.061 3.939 23 C -0.119 4.119 24 C 0.077 3.923 25 O -0.575 6.575 26 C 0.052 3.948 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.392 0.608 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.380 0.620 49 H 0.081 0.919 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -31.558 -1.298 33.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.397 5.397 13 C 0.401 3.599 14 O -0.468 6.468 15 N -0.404 5.404 16 C 0.063 3.937 17 H 0.116 0.884 18 C -0.172 4.172 19 C -0.153 4.153 20 C -0.077 4.077 21 N -0.258 5.258 22 C -0.067 4.067 23 C -0.157 4.157 24 C -0.002 4.002 25 O -0.380 6.380 26 C -0.076 4.076 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.227 0.773 49 H 0.100 0.900 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.035 -31.320 -1.236 32.912 hybrid contribution 2.700 0.962 0.158 2.871 sum 12.735 -30.359 -1.078 32.939 Atomic orbital electron populations 1.69968 1.06047 1.26657 1.50537 1.25029 0.94850 0.99270 0.95292 0.86585 0.79787 0.83475 0.78074 1.20676 1.21206 1.19932 1.21207 0.92977 0.90971 1.50950 0.92676 1.19032 0.93868 0.90803 0.97713 1.21889 0.99781 0.93379 1.00778 1.21505 0.91289 0.84128 1.01877 1.45396 1.10399 1.04479 1.79377 1.15986 0.85310 0.80707 0.77849 1.90923 1.14073 1.84037 1.57739 1.45109 1.08794 1.05104 1.81394 1.20660 0.97854 0.78762 0.96432 0.88442 1.22023 1.01860 0.96418 0.96877 1.21546 0.98995 0.94172 1.00588 1.22234 0.98090 0.99671 0.87709 1.61713 1.46192 1.01317 1.16558 1.21949 0.93163 0.92573 0.99045 1.21517 0.99548 0.92972 1.01656 1.22117 0.95291 0.83777 0.98976 1.86482 1.46734 1.22810 1.81988 1.22259 0.95825 0.88138 1.01396 0.92938 0.96228 0.96226 0.92809 0.92797 0.91949 0.91992 0.77398 0.77483 0.90745 0.92295 0.91117 0.90606 0.94823 0.90168 0.90372 0.94642 0.91051 0.90077 0.93500 0.93834 0.77302 0.90019 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.14 2.44 5.67 -4.04 -0.02 2.41 16 12 N -0.74 -10.81 5.56 -65.22 -0.36 -11.17 16 13 C 0.70 10.75 8.53 -86.91 -0.74 10.01 16 14 O -0.59 -11.66 16.01 5.29 0.08 -11.57 16 15 N -0.75 -8.07 5.09 -58.60 -0.30 -8.37 16 16 C 0.17 1.74 2.61 -67.85 -0.18 1.56 16 17 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 18 C -0.13 -1.31 5.58 -26.61 -0.15 -1.46 16 19 C -0.11 -0.94 6.09 -26.65 -0.16 -1.10 16 20 C 0.05 0.36 5.29 -3.83 -0.02 0.34 16 21 N -0.53 -4.09 4.66 -234.68 -1.09 -5.18 16 22 C 0.06 0.36 4.96 -3.83 -0.02 0.35 16 23 C -0.12 -0.76 5.51 -26.73 -0.15 -0.90 16 24 C 0.08 0.40 7.05 37.16 0.26 0.66 16 25 O -0.57 -3.75 13.66 -35.23 -0.48 -4.23 16 26 C 0.05 0.40 4.93 -3.84 -0.02 0.39 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 4.51 8.49 -40.82 -0.35 4.16 16 35 H 0.39 3.04 8.62 -40.82 -0.35 2.69 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.53 6.21 -51.93 -0.32 0.21 16 42 H 0.08 0.43 7.99 -51.93 -0.41 0.02 16 43 H 0.04 0.19 8.12 -51.93 -0.42 -0.23 16 44 H 0.07 0.49 6.43 -51.92 -0.33 0.15 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.20 8.14 -51.92 -0.42 -0.22 16 47 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.38 0.74 9.12 45.56 0.42 1.15 16 49 H 0.08 0.61 8.02 -51.93 -0.42 0.19 16 50 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -34.68 398.91 -10.78 -45.46 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.47 Total: 1.93 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.89 Total: -3.22 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.02 Total: -50.88 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.40 Total: -15.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.68 -10.78 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227026394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.013 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds