Wall clock time and date at job start Tue Mar 31 2020 10:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48498 * 109.47031 * 272.45869 * 3 2 1 5 5 H 1.48500 * 109.47472 * 32.45791 * 3 2 1 6 6 H 1.48505 * 109.47065 * 152.45681 * 3 2 1 7 7 C 1.39947 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 24.70176 * 7 2 1 9 9 C 1.41389 * 120.00143 * 204.69820 * 7 2 1 10 10 C 1.40741 * 120.24750 * 232.11463 * 9 7 2 11 11 C 1.37592 * 119.74395 * 180.31971 * 10 9 7 12 12 C 1.38658 * 120.24960 * 359.65963 * 11 10 9 13 13 C 1.38614 * 120.50170 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.24722 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.12664 * 179.97438 * 14 13 12 16 16 N 1.46895 * 109.47398 * 265.77549 * 15 14 13 17 17 C 1.46930 * 110.98616 * 308.50461 * 16 15 14 18 18 C 1.53048 * 109.47944 * 174.17113 * 17 16 15 19 19 C 1.53067 * 109.29784 * 59.09255 * 18 17 16 20 20 C 1.52943 * 109.55821 * 182.39209 * 19 18 17 21 21 C 1.53009 * 109.46170 * 179.90470 * 20 19 18 22 22 C 1.52996 * 109.47565 * 59.92831 * 21 20 19 23 23 C 1.52996 * 109.49541 * 300.01007 * 22 21 20 24 24 C 1.52964 * 109.49914 * 62.22392 * 19 18 17 25 25 C 1.53080 * 109.23401 * 302.34678 * 19 18 17 26 26 C 1.46849 * 111.00166 * 184.23094 * 16 15 14 27 27 H 0.97001 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.12351 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.87485 * 179.68235 * 11 10 9 30 30 H 1.08004 * 119.74852 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.87282 * 179.97438 * 13 12 11 32 32 H 1.09002 * 109.47301 * 145.76970 * 15 14 13 33 33 H 1.09008 * 109.47019 * 25.77551 * 15 14 13 34 34 H 1.09004 * 109.52129 * 54.14852 * 17 16 15 35 35 H 1.09004 * 109.45040 * 294.15149 * 17 16 15 36 36 H 1.09010 * 109.50519 * 299.13966 * 18 17 16 37 37 H 1.08996 * 109.50932 * 179.05558 * 18 17 16 38 38 H 1.08999 * 109.46875 * 299.90285 * 20 19 18 39 39 H 1.08996 * 109.47036 * 59.90235 * 20 19 18 40 40 H 1.08997 * 109.47119 * 299.92716 * 21 20 19 41 41 H 1.09004 * 109.46842 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.46230 * 179.97438 * 22 21 20 43 43 H 1.09007 * 109.45749 * 60.01321 * 22 21 20 44 44 H 1.09000 * 109.47053 * 300.00929 * 23 22 21 45 45 H 1.09007 * 109.47517 * 180.02562 * 23 22 21 46 46 H 1.09006 * 109.47298 * 300.14746 * 24 19 18 47 47 H 1.08994 * 109.47632 * 60.15790 * 24 19 18 48 48 H 1.09008 * 109.50929 * 177.58420 * 25 19 18 49 49 H 1.09002 * 109.50786 * 297.67124 * 25 19 18 50 50 H 1.09000 * 109.46475 * 65.85172 * 26 16 15 51 51 H 1.09001 * 109.46616 * 305.86945 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4377 2.0765 -1.3988 5 1 1.4667 2.6372 0.7514 6 1 3.5649 1.4258 0.6474 7 6 2.0081 -1.2120 0.0005 8 1 1.5422 -2.1046 -0.3899 9 6 3.3250 -1.2677 0.5122 10 6 4.3621 -1.8252 -0.2588 11 6 5.6385 -1.8802 0.2519 12 6 5.9063 -1.3827 1.5182 13 6 4.8939 -0.8255 2.2837 14 6 3.6095 -0.7609 1.7935 15 6 2.5108 -0.1551 2.6284 16 7 1.8167 -1.2168 3.3693 17 6 1.3990 -2.3002 2.4690 18 6 0.8119 -3.4495 3.2915 19 6 -0.3851 -2.9362 4.0956 20 6 -0.9399 -4.0654 4.9653 21 6 -2.1347 -3.5493 5.7698 22 6 -3.2223 -3.0606 4.8111 23 6 -2.6666 -1.9308 3.9419 24 6 -1.4722 -2.4472 3.1370 25 6 0.0666 -1.7779 4.9887 26 6 0.6746 -0.6762 4.1174 27 1 -0.4850 0.8401 -0.0004 28 1 4.1558 -2.2126 -1.2455 29 1 6.4349 -2.3122 -0.3358 30 1 6.9113 -1.4297 1.9109 31 1 5.1138 -0.4414 3.2690 32 1 1.8017 0.3579 1.9788 33 1 2.9404 0.5579 3.3322 34 1 2.2611 -2.6593 1.9068 35 1 0.6444 -1.9263 1.7769 36 1 1.5706 -3.8337 3.9735 37 1 0.4865 -4.2465 2.6229 38 1 -1.2594 -4.8906 4.3289 39 1 -0.1645 -4.4124 5.6482 40 1 -1.8148 -2.7249 6.4070 41 1 -2.5304 -4.3542 6.3893 42 1 -4.0735 -2.6934 5.3843 43 1 -3.5422 -3.8853 4.1741 44 1 -2.3465 -1.1062 4.5788 45 1 -3.4419 -1.5825 3.2593 46 1 -1.0757 -1.6422 2.5181 47 1 -1.7924 -3.2714 2.4998 48 1 -0.7912 -1.3808 5.5315 49 1 0.8129 -2.1351 5.6983 50 1 -0.0770 -0.3098 3.4181 51 1 1.0111 0.1441 4.7515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:58 Heat of formation + Delta-G solvation = 7.169871 kcal Electronic energy + Delta-G solvation = -28435.170797 eV Core-core repulsion = 25104.851132 eV Total energy + Delta-G solvation = -3330.319665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.09519 -38.35743 -36.10880 -33.62486 -32.60582 -30.83340 -30.47876 -30.12419 -29.63940 -27.08520 -25.25192 -24.05013 -22.75607 -22.46606 -21.43815 -20.68051 -20.02962 -19.29322 -17.54593 -17.47164 -15.87645 -15.35340 -14.82248 -14.75674 -14.30955 -14.19114 -13.88872 -13.84396 -13.71570 -13.22900 -13.12400 -12.95008 -12.65503 -12.31992 -12.12325 -11.85406 -11.82292 -11.62493 -11.37102 -11.32716 -11.05833 -10.94476 -10.79174 -10.68434 -10.59455 -10.50286 -10.32880 -10.18170 -10.04572 -9.82044 -9.62602 -9.57656 -9.43361 -9.17324 -8.91952 -7.68505 -7.38680 -7.10620 -6.74181 -4.36122 2.56522 2.64473 3.10084 3.20828 3.31826 4.05717 4.51985 4.81506 4.88506 4.99248 5.01323 5.29638 5.37179 5.45835 5.55615 5.61266 5.67669 5.77908 5.82153 5.86573 5.90190 5.96288 6.00706 6.11576 6.15169 6.17721 6.20150 6.23912 6.25447 6.29167 6.31595 6.38007 6.42267 6.45004 6.51835 6.61247 6.62508 6.67911 6.76427 6.82061 6.83270 6.93267 6.96810 7.14347 7.27240 7.41007 7.44541 7.64130 7.69413 7.96925 8.03036 8.06307 8.17084 8.48237 8.71913 8.92759 10.24887 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016807 B = 0.005255 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.589242 B = 5326.930657 C = 6052.830208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.103 3.897 3 Si 0.860 3.140 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.235 1.235 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.100 3.900 10 C -0.192 4.192 11 C -0.104 4.104 12 C -0.214 4.214 13 C -0.084 4.084 14 C -0.145 4.145 15 C 0.107 3.893 16 N -0.526 5.526 17 C 0.055 3.945 18 C -0.108 4.108 19 C -0.052 4.052 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.100 4.100 26 C 0.052 3.948 27 H 0.277 0.723 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.036 0.964 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -3.020 8.571 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.112 4.112 3 Si 0.684 3.316 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.158 1.158 7 C -0.523 4.523 8 H 0.108 0.892 9 C 0.097 3.903 10 C -0.211 4.211 11 C -0.123 4.123 12 C -0.233 4.233 13 C -0.103 4.103 14 C -0.147 4.147 15 C -0.020 4.020 16 N -0.251 5.251 17 C -0.071 4.071 18 C -0.146 4.146 19 C -0.052 4.052 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.077 4.077 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.054 0.946 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.314 -3.111 8.906 9.999 hybrid contribution -0.207 1.170 -0.676 1.367 sum -3.521 -1.941 8.230 9.160 Atomic orbital electron populations 1.69761 1.07503 1.29133 1.38192 1.25580 0.94182 1.00013 0.91392 0.87092 0.83342 0.82000 0.79174 1.20244 1.20726 1.15806 1.18939 0.96186 0.96821 1.40337 0.89173 1.17649 0.93158 0.89691 0.89799 1.21432 0.92337 1.08155 0.99167 1.20742 0.96349 0.99667 0.95501 1.20562 0.97746 1.08322 0.96629 1.20570 0.92978 0.98912 0.97800 1.19870 0.93361 1.06881 0.94574 1.20918 0.94517 0.92522 0.94028 1.62091 1.24542 1.10408 1.28052 1.22455 1.01269 0.90157 0.93267 1.21723 0.96087 0.98342 0.98419 1.20485 0.95029 0.94632 0.95066 1.21571 0.96931 0.97758 0.98144 1.21551 0.96000 1.00284 0.97783 1.21518 0.97410 0.98620 0.97874 1.21557 0.97905 0.97752 0.98415 1.21678 0.94404 1.01587 0.97364 1.21646 0.99166 0.95540 0.97444 1.22047 0.92726 0.96305 0.96575 0.91290 0.88012 0.88852 0.88840 0.88652 0.93391 0.92987 0.89901 0.90546 0.92538 0.92653 0.92437 0.92449 0.91945 0.92864 0.92873 0.92421 0.92084 0.92603 0.89942 0.92652 0.92012 0.92015 0.94550 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.50 13.77 55.55 0.76 -19.73 16 2 C 0.10 2.55 3.60 -17.34 -0.06 2.49 16 3 Si 0.86 19.80 25.12 -169.99 -4.27 15.53 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.24 -5.53 5.89 56.52 0.33 -5.20 16 7 C -0.49 -12.26 5.84 -37.74 -0.22 -12.48 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.10 2.36 2.99 -106.82 -0.32 2.04 16 10 C -0.19 -4.30 9.80 -38.87 -0.38 -4.68 16 11 C -0.10 -2.13 10.02 -39.66 -0.40 -2.53 16 12 C -0.21 -4.32 10.05 -39.29 -0.39 -4.72 16 13 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 14 C -0.15 -3.28 2.89 -103.91 -0.30 -3.58 16 15 C 0.11 2.31 4.23 -4.98 -0.02 2.29 16 16 N -0.53 -10.49 4.76 -236.02 -1.12 -11.61 16 17 C 0.06 1.14 3.60 -3.78 -0.01 1.13 16 18 C -0.11 -1.87 4.88 -26.67 -0.13 -2.00 16 19 C -0.05 -0.78 0.51 -154.48 -0.08 -0.86 16 20 C -0.11 -1.37 4.74 -26.76 -0.13 -1.50 16 21 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 22 C -0.12 -1.37 5.92 -26.74 -0.16 -1.52 16 23 C -0.12 -1.62 5.65 -26.73 -0.15 -1.77 16 24 C -0.11 -1.81 4.15 -26.75 -0.11 -1.92 16 25 C -0.10 -1.51 4.18 -26.66 -0.11 -1.62 16 26 C 0.05 0.92 5.21 -3.82 -0.02 0.90 16 27 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.05 1.11 3.17 -51.93 -0.16 0.95 16 33 H 0.05 1.05 8.06 -51.92 -0.42 0.64 16 34 H 0.08 1.91 5.19 -51.93 -0.27 1.64 16 35 H 0.08 1.76 4.75 -51.93 -0.25 1.51 16 36 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.71 6.49 -51.93 -0.34 0.38 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 45 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 46 H 0.08 1.60 4.91 -51.93 -0.26 1.34 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.84 4.83 -51.92 -0.25 0.59 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.04 0.71 6.51 -51.93 -0.34 0.37 16 51 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -24.45 355.75 -11.38 -35.83 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.58 Total: 8.63 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -3.53 Total: -34.01 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: -0.36 Total: -31.34 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.27 Total: 15.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -24.45 -11.38 -35.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.002 kcal (2) G-P(sol) polarization free energy of solvation -24.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds