Wall clock time and date at job start Tue Mar 31 2020 11:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47283 * 2 1 4 4 C 1.42895 * 114.00062 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47159 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47105 * 305.00650 * 5 4 3 7 7 O 1.42903 * 109.46714 * 65.00129 * 5 4 3 8 8 C 1.52995 * 109.47304 * 185.00182 * 5 4 3 9 9 N 1.46903 * 109.47176 * 173.12486 * 8 5 4 10 10 C 1.46898 * 110.99816 * 78.03774 * 9 8 5 11 11 C 1.50700 * 109.46880 * 200.04325 * 10 9 8 12 12 H 1.08002 * 119.99913 * 359.28796 * 11 10 9 13 13 C 1.37881 * 119.99794 * 179.29013 * 11 10 9 14 14 N 1.31515 * 119.99449 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 120.00021 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.46985 * 269.99896 * 15 13 11 17 17 H 1.48495 * 109.47640 * 29.99784 * 15 13 11 18 18 H 1.48501 * 109.46978 * 150.00237 * 15 13 11 19 19 C 1.46902 * 110.99892 * 201.99204 * 9 8 5 20 20 C 1.53011 * 109.47372 * 288.12611 * 19 9 8 21 21 C 1.52994 * 109.46083 * 164.04539 * 20 19 9 22 22 C 1.52982 * 109.50971 * 315.98896 * 21 20 19 23 23 C 1.53006 * 109.47002 * 112.93478 * 22 21 20 24 24 C 1.53006 * 109.43001 * 284.04432 * 23 22 21 25 25 C 1.52980 * 109.48852 * 75.96238 * 24 23 22 26 26 C 1.53001 * 109.50412 * 247.06375 * 25 24 23 27 27 H 1.09005 * 109.47020 * 299.99661 * 1 2 3 28 28 H 1.08992 * 109.47031 * 59.99711 * 1 2 3 29 29 H 1.08994 * 109.46932 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47215 * 239.99812 * 2 1 3 31 31 H 1.08999 * 109.47394 * 119.99707 * 2 1 3 32 32 H 1.08997 * 109.47057 * 60.00300 * 4 3 2 33 33 H 1.08999 * 109.47377 * 299.99871 * 4 3 2 34 34 H 0.96698 * 114.00028 * 60.00395 * 7 5 4 35 35 H 1.08998 * 109.47383 * 53.12419 * 8 5 4 36 36 H 1.09001 * 109.47359 * 293.12604 * 8 5 4 37 37 H 1.09006 * 109.46979 * 80.04524 * 10 9 8 38 38 H 1.08998 * 109.47491 * 320.04312 * 10 9 8 39 39 H 0.96999 * 119.99468 * 179.97438 * 14 13 11 40 40 H 1.09008 * 109.46679 * 48.12976 * 19 9 8 41 41 H 1.09002 * 109.47243 * 284.04533 * 20 19 9 42 42 H 1.09008 * 109.46851 * 44.04981 * 20 19 9 43 43 H 1.09002 * 109.46106 * 195.98101 * 21 20 19 44 44 H 1.09000 * 109.45431 * 75.99806 * 21 20 19 45 45 H 1.08997 * 109.47111 * 352.93783 * 22 21 20 46 46 H 1.08997 * 109.46951 * 232.93335 * 22 21 20 47 47 H 1.08992 * 109.47715 * 164.05376 * 23 22 21 48 48 H 1.08998 * 109.48338 * 44.03401 * 23 22 21 49 49 H 1.08993 * 109.46570 * 315.95110 * 24 23 22 50 50 H 1.09001 * 109.46386 * 195.96276 * 24 23 22 51 51 H 1.09002 * 109.46801 * 127.05258 * 25 24 23 52 52 H 1.09008 * 109.46418 * 7.07038 * 25 24 23 53 53 H 1.08998 * 109.47326 * 284.01483 * 26 25 24 54 54 H 1.09003 * 109.47528 * 164.00826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3499 3.4410 -0.8424 7 8 3.3976 3.5461 1.2204 8 6 5.3454 3.0606 -0.1253 9 7 5.7110 4.4736 -0.2914 10 6 5.6667 5.1835 0.9940 11 6 5.5554 6.6657 0.7456 12 1 5.5326 7.0435 -0.2659 13 6 5.4826 7.5394 1.8097 14 7 5.3850 8.8329 1.5929 15 14 5.5228 6.8860 3.5592 16 1 4.1373 6.6061 4.0149 17 1 6.3202 5.6340 3.6019 18 1 6.1424 7.8983 4.4516 19 6 7.0322 4.6051 -0.9201 20 6 8.1159 4.1967 0.0799 21 6 9.4291 3.9485 -0.6648 22 6 9.1525 3.1374 -1.9320 23 6 9.4339 4.0021 -3.1626 24 6 8.2893 4.9987 -3.3568 25 6 8.4177 6.1291 -2.3341 26 6 7.2521 6.0583 -1.3454 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9767 0.8908 34 1 3.7821 3.1486 2.0136 35 1 5.6854 2.4930 -0.9915 36 1 5.8169 2.6667 0.7751 37 1 6.5781 4.9765 1.5550 38 1 4.8030 4.8451 1.5663 39 1 5.3334 9.4475 2.3415 40 1 7.0836 3.9584 -1.7961 41 1 8.2568 4.9945 0.8091 42 1 7.8113 3.2846 0.5933 43 1 10.1126 3.3947 -0.0211 44 1 9.8789 4.9037 -0.9358 45 1 8.1093 2.8216 -1.9408 46 1 9.7981 2.2594 -1.9496 47 1 9.5148 3.3653 -4.0434 48 1 10.3681 4.5450 -3.0195 49 1 7.3361 4.4889 -3.2172 50 1 8.3355 5.4131 -4.3640 51 1 8.3989 7.0893 -2.8496 52 1 9.3589 6.0252 -1.7940 53 1 6.3483 6.4384 -1.8215 54 1 7.4825 6.6628 -0.4681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252026479.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:23 Heat of formation + Delta-G solvation = -109.988988 kcal Electronic energy + Delta-G solvation = -28921.844251 eV Core-core repulsion = 25279.135277 eV Total energy + Delta-G solvation = -3642.708974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04578 -39.52096 -38.09997 -36.58536 -34.53560 -33.61972 -32.86117 -32.29015 -30.98669 -29.27210 -27.07393 -26.62783 -25.09352 -23.66617 -23.47150 -22.46078 -22.12040 -21.38962 -19.68952 -18.71497 -17.90490 -17.52582 -17.19677 -16.98458 -16.59792 -16.08249 -15.89118 -15.58462 -15.13593 -14.92302 -14.80341 -14.60072 -14.42228 -14.21330 -14.03630 -14.03381 -13.60424 -13.38877 -13.21753 -13.09574 -12.87562 -12.51794 -12.35047 -12.28709 -12.23141 -12.13406 -11.99967 -11.92340 -11.87983 -11.66372 -11.63927 -11.54153 -11.30980 -11.00153 -10.75534 -10.59005 -10.54020 -10.43672 -10.32407 -8.76989 -8.13133 -6.07767 1.34591 1.37491 1.44528 2.42616 2.58503 3.20894 3.37184 3.57754 3.79861 4.00451 4.04178 4.11267 4.12305 4.18340 4.24654 4.31483 4.33596 4.37633 4.39601 4.41515 4.43849 4.50799 4.51969 4.52619 4.58836 4.66655 4.84230 4.87508 4.94826 5.02195 5.04276 5.11451 5.12796 5.15993 5.19141 5.23417 5.25082 5.27487 5.32909 5.38192 5.41563 5.48096 5.60200 5.66398 5.76379 5.80606 5.83415 6.18556 6.31305 6.63617 6.84177 6.91289 6.96891 7.50394 9.03147 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.008702 B = 0.005328 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.783338 B = 5254.428465 C = 7614.419621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.410 6.410 4 C 0.041 3.959 5 C 0.117 3.883 6 H 0.083 0.917 7 O -0.564 6.564 8 C 0.031 3.969 9 N -0.538 5.538 10 C 0.154 3.846 11 C -0.484 4.484 12 H 0.051 0.949 13 C 0.000 4.000 14 N -0.958 5.958 15 Si 0.935 3.065 16 H -0.274 1.274 17 H -0.250 1.250 18 H -0.292 1.292 19 C 0.087 3.913 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.093 4.093 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.374 0.626 35 H 0.098 0.902 36 H 0.043 0.957 37 H -0.010 1.010 38 H 0.050 0.950 39 H 0.258 0.742 40 H 0.111 0.889 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.046 0.954 52 H 0.073 0.927 53 H 0.031 0.969 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.160 -21.946 -6.532 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.331 6.331 4 C -0.036 4.036 5 C 0.057 3.943 6 H 0.101 0.899 7 O -0.371 6.371 8 C -0.097 4.097 9 N -0.260 5.260 10 C 0.027 3.973 11 C -0.523 4.523 12 H 0.069 0.931 13 C -0.195 4.195 14 N -0.601 5.601 15 Si 0.760 3.240 16 H -0.200 1.200 17 H -0.173 1.173 18 H -0.219 1.219 19 C -0.020 4.020 20 C -0.180 4.180 21 C -0.157 4.157 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.131 4.131 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.008 0.992 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.065 0.935 52 H 0.091 0.909 53 H 0.050 0.950 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.324 -21.056 -7.168 22.489 hybrid contribution 0.698 0.059 2.026 2.144 sum 4.022 -20.997 -5.142 21.989 Atomic orbital electron populations 1.21771 0.93397 1.03305 1.02360 1.22678 0.96143 0.82924 1.00989 1.87965 1.21497 1.28012 1.95580 1.23183 0.81572 0.96619 1.02203 1.21927 0.93572 0.91255 0.87518 0.89865 1.86738 1.72517 1.61754 1.16046 1.22632 0.94869 0.90379 1.01837 1.61991 1.28321 1.10265 1.25416 1.20361 0.95798 0.93011 0.88109 1.21579 1.45589 0.91181 0.93925 0.93058 1.25702 0.95937 0.94911 1.02908 1.70062 1.54694 1.03215 1.32133 0.85896 0.78730 0.78705 0.80636 1.19989 1.17343 1.21891 1.22212 0.85917 0.96952 0.96896 1.22169 0.97246 0.99815 0.98781 1.21792 0.96070 1.00756 0.97108 1.21779 1.02074 0.98288 0.93733 1.21681 0.97791 0.97405 0.98111 1.21785 0.99576 0.96403 0.98252 1.21897 0.98671 0.98569 0.97010 1.21618 0.96763 0.96533 0.98158 0.92946 0.92613 0.88762 0.92090 0.92528 0.90431 0.91621 0.77776 0.88383 0.93925 0.99247 0.93189 0.93293 0.87153 0.94650 0.92434 0.91779 0.91512 0.91438 0.90736 0.90661 0.91687 0.91602 0.91800 0.93537 0.90911 0.95037 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.41 -11.03 10.31 -144.34 -1.49 -12.52 16 4 C 0.04 0.94 5.57 71.98 0.40 1.34 16 5 C 0.12 3.57 3.47 30.59 0.11 3.67 16 6 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 7 O -0.56 -20.59 10.66 -144.34 -1.54 -22.13 16 8 C 0.03 0.91 4.18 86.30 0.36 1.27 16 9 N -0.54 -20.92 4.37 -875.48 -3.83 -24.75 16 10 C 0.15 7.22 3.35 85.56 0.29 7.51 16 11 C -0.48 -28.04 7.58 25.60 0.19 -27.85 16 12 H 0.05 3.29 5.63 -2.91 -0.02 3.28 16 13 C 0.00 0.01 5.47 84.66 0.46 0.47 16 14 N -0.96 -62.13 13.96 21.45 0.30 -61.83 16 15 Si 0.93 46.19 27.45 68.60 1.88 48.08 16 16 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 17 H -0.25 -11.30 6.56 99.48 0.65 -10.65 16 18 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 19 C 0.09 2.99 1.56 44.92 0.07 3.06 16 20 C -0.14 -4.45 3.85 30.60 0.12 -4.33 16 21 C -0.12 -2.90 5.48 30.59 0.17 -2.74 16 22 C -0.12 -2.36 5.47 30.59 0.17 -2.20 16 23 C -0.11 -2.13 5.59 30.60 0.17 -1.96 16 24 C -0.12 -2.96 5.47 30.59 0.17 -2.79 16 25 C -0.12 -3.83 5.48 30.59 0.17 -3.66 16 26 C -0.09 -3.73 3.44 30.60 0.11 -3.63 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.37 10.88 8.79 -74.06 -0.65 10.23 16 35 H 0.10 2.25 7.66 -2.39 -0.02 2.23 16 36 H 0.04 1.15 7.21 -2.39 -0.02 1.13 16 37 H -0.01 -0.47 4.81 -2.38 -0.01 -0.48 16 38 H 0.05 2.38 4.29 -2.39 -0.01 2.37 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.11 3.20 2.45 -2.38 -0.01 3.19 16 41 H 0.03 1.37 6.66 -2.39 -0.02 1.35 16 42 H 0.06 1.69 6.78 -2.38 -0.02 1.67 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.73 4.69 -2.39 -0.01 1.72 16 45 H 0.07 1.37 5.47 -2.39 -0.01 1.35 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.06 1.21 7.47 -2.39 -0.02 1.19 16 49 H 0.07 1.69 5.47 -2.39 -0.01 1.68 16 50 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.07 2.12 4.69 -2.38 -0.01 2.11 16 53 H 0.03 1.46 7.11 -2.39 -0.02 1.44 16 54 H 0.04 2.07 6.05 -2.39 -0.01 2.05 16 Total: -1.00 -73.66 379.83 -0.32 -73.98 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.18 Total: 31.43 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.17 Total: -32.25 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -3.53 Total: -86.58 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -3.03 Total: -34.65 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.08 kcal Total: -73.66 -0.32 -73.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252026479.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.011 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds