Wall clock time and date at job start Tue Mar 31 2020 11:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46839 * 2 1 4 4 C 1.52997 * 109.46606 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47146 * 185.32387 * 4 3 2 6 6 H 1.09002 * 109.47092 * 54.84391 * 5 4 3 7 7 C 1.53007 * 109.46996 * 294.84830 * 5 4 3 8 8 C 1.52989 * 109.47115 * 174.74470 * 7 5 4 9 9 C 1.52991 * 109.47306 * 174.84445 * 5 4 3 10 10 O 1.42902 * 109.46998 * 185.36499 * 9 5 4 11 11 C 1.42904 * 113.99948 * 180.02562 * 10 9 5 12 12 C 1.53002 * 109.46987 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46642 * 55.00363 * 12 11 10 14 14 O 1.42894 * 109.47580 * 295.00060 * 12 11 10 15 15 C 1.53001 * 109.46642 * 174.99809 * 12 11 10 16 16 N 1.46907 * 109.46649 * 185.00434 * 15 12 11 17 17 C 1.47961 * 110.99742 * 190.00132 * 16 15 12 18 18 C 1.53937 * 86.17759 * 137.58075 * 17 16 15 19 19 C 1.50703 * 113.73257 * 221.81033 * 18 17 16 20 20 H 1.08000 * 120.00350 * 358.10785 * 19 18 17 21 21 C 1.37878 * 119.99932 * 178.09739 * 19 18 17 22 22 N 1.31513 * 120.00002 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47217 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46885 * 120.00664 * 23 21 19 26 26 H 1.48493 * 109.47373 * 240.00497 * 23 21 19 27 27 C 1.48308 * 111.00207 * 289.35161 * 16 15 12 28 28 H 1.09002 * 109.47214 * 59.99797 * 1 2 3 29 29 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47066 * 300.00065 * 1 2 3 31 31 H 1.08998 * 109.47066 * 239.99935 * 2 1 3 32 32 H 1.08997 * 109.46808 * 119.99606 * 2 1 3 33 33 H 1.09002 * 109.46858 * 60.00155 * 3 2 1 34 34 H 1.08994 * 109.47511 * 299.99749 * 3 2 1 35 35 H 1.09004 * 109.47423 * 65.32893 * 4 3 2 36 36 H 1.08997 * 109.47724 * 305.32443 * 4 3 2 37 37 H 1.08998 * 109.46292 * 294.74626 * 7 5 4 38 38 H 1.08998 * 109.47068 * 54.74435 * 7 5 4 39 39 H 1.09001 * 109.47516 * 186.81281 * 8 7 5 40 40 H 1.09005 * 109.47385 * 306.81660 * 8 7 5 41 41 H 1.09005 * 109.47288 * 66.81448 * 8 7 5 42 42 H 1.09004 * 109.47473 * 65.36695 * 9 5 4 43 43 H 1.09000 * 109.47448 * 305.36191 * 9 5 4 44 44 H 1.09004 * 109.47259 * 59.99905 * 11 10 9 45 45 H 1.09001 * 109.47096 * 299.99862 * 11 10 9 46 46 H 0.96701 * 113.99965 * 300.00372 * 14 12 11 47 47 H 1.09000 * 109.46962 * 65.00872 * 15 12 11 48 48 H 1.08993 * 109.47672 * 304.99955 * 15 12 11 49 49 H 1.09002 * 113.76124 * 23.26788 * 17 16 15 50 50 H 1.08994 * 113.75995 * 251.90027 * 17 16 15 51 51 H 1.09003 * 113.73227 * 90.64096 * 18 17 16 52 52 H 0.97003 * 119.99849 * 179.97438 * 22 21 19 53 53 H 1.09000 * 113.85380 * 108.14752 * 27 16 15 54 54 H 1.08997 * 113.75920 * 336.68312 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8789 0.1345 6 1 3.6428 3.3385 1.0209 7 6 3.6790 3.6801 -1.1058 8 6 4.0732 5.1460 -0.9154 9 6 5.6043 2.8688 0.2644 10 8 6.0699 4.1965 0.5143 11 6 7.4886 4.2987 0.6522 12 6 7.8717 5.7565 0.9149 13 1 7.3231 6.1258 1.7814 14 8 7.5451 6.5485 -0.2287 15 6 9.3747 5.8477 1.1861 16 7 9.7227 7.2263 1.5558 17 6 11.1903 7.4108 1.5930 18 6 10.9359 8.7538 0.8850 19 6 11.9196 9.0547 -0.2163 20 1 12.7276 8.3680 -0.4213 21 6 11.7881 10.2067 -0.9624 22 7 10.8044 11.0432 -0.7126 23 14 13.0070 10.5794 -2.3280 24 1 14.0114 9.4884 -2.4064 25 1 12.2850 10.6811 -3.6217 26 1 13.6932 11.8648 -2.0418 27 6 9.6187 8.1325 0.3865 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 1.0134 -0.9330 36 1 3.9330 0.8485 0.8393 37 1 4.1905 3.2768 -1.9797 38 1 2.6010 3.6097 -1.2510 39 1 3.6814 5.7381 -1.7425 40 1 3.6594 5.5146 0.0233 41 1 5.1598 5.2299 -0.8913 42 1 6.0454 2.4972 -0.6606 43 1 5.8943 2.2205 1.0913 44 1 7.9684 3.9569 -0.2650 45 1 7.8180 3.6800 1.4869 46 1 7.9982 6.2759 -1.0383 47 1 9.9238 5.5626 0.2887 48 1 9.6382 5.1752 2.0024 49 1 11.7390 6.6911 0.9855 50 1 11.5944 7.5148 2.5999 51 1 10.7951 9.5907 1.5691 52 1 10.7121 11.8538 -1.2373 53 1 8.7681 8.8128 0.4303 54 1 9.7088 7.6234 -0.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252991284.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:43 Heat of formation + Delta-G solvation = -120.405741 kcal Electronic energy + Delta-G solvation = -26674.619419 eV Core-core repulsion = 23031.458741 eV Total energy + Delta-G solvation = -3643.160678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74447 -39.68540 -38.17392 -36.97007 -34.97096 -34.68589 -32.43723 -31.47685 -29.90592 -28.61086 -26.93806 -26.62358 -24.96089 -23.98168 -23.67519 -22.44233 -21.87506 -20.85692 -20.39551 -18.68689 -17.76273 -17.61227 -17.21456 -16.71819 -16.46823 -16.31548 -16.17422 -15.64911 -15.38645 -15.21020 -14.70822 -14.50257 -14.43422 -14.05751 -13.84303 -13.60885 -13.54728 -13.36832 -13.15567 -13.08857 -13.02273 -12.86598 -12.57062 -12.45527 -12.31029 -12.20087 -12.00890 -11.93605 -11.79114 -11.66296 -11.55579 -11.39957 -11.28071 -11.13563 -11.05505 -10.88204 -10.72504 -10.41375 -10.33087 -9.54810 -8.12639 -6.24557 1.41824 1.43409 1.54956 2.42688 2.53486 3.17084 3.32382 3.53748 3.80041 3.83601 3.97394 4.07882 4.09839 4.11741 4.15541 4.31212 4.35580 4.36517 4.42225 4.49507 4.52391 4.55521 4.57741 4.63603 4.65102 4.67860 4.78734 4.79709 4.83752 4.89871 4.92741 4.97880 5.03458 5.03858 5.12796 5.15184 5.20455 5.23183 5.27911 5.33147 5.38718 5.44836 5.51768 5.55359 5.55957 5.64899 5.74545 5.87607 6.30153 6.31721 6.44416 6.84592 6.85067 7.43801 8.96948 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.002019 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.712374 B =13866.469967 C =14358.744101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.106 4.106 5 C -0.083 4.083 6 H 0.066 0.934 7 C -0.109 4.109 8 C -0.151 4.151 9 C 0.061 3.939 10 O -0.386 6.386 11 C 0.038 3.962 12 C 0.122 3.878 13 H 0.088 0.912 14 O -0.564 6.564 15 C -0.004 4.004 16 N -0.493 5.493 17 C 0.013 3.987 18 C 0.008 3.992 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.013 3.987 22 N -0.922 5.922 23 Si 0.958 3.042 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.055 3.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.376 0.624 47 H 0.045 0.955 48 H 0.096 0.904 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.018 0.982 52 H 0.261 0.739 53 H 0.038 0.962 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 -24.428 0.221 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.144 4.144 5 C -0.102 4.102 6 H 0.084 0.916 7 C -0.146 4.146 8 C -0.208 4.208 9 C -0.015 4.015 10 O -0.305 6.305 11 C -0.039 4.039 12 C 0.062 3.938 13 H 0.106 0.894 14 O -0.370 6.370 15 C -0.133 4.133 16 N -0.216 5.216 17 C -0.115 4.115 18 C -0.011 4.011 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.186 4.186 22 N -0.561 5.561 23 Si 0.784 3.216 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.074 4.074 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.224 0.776 47 H 0.064 0.936 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.037 0.963 52 H 0.070 0.930 53 H 0.057 0.943 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.288 -23.709 1.210 28.790 hybrid contribution 1.432 0.084 -1.649 2.185 sum -14.855 -23.626 -0.438 27.911 Atomic orbital electron populations 1.21790 0.95820 1.01838 1.01756 1.21532 0.95964 0.96495 1.02159 1.21633 0.94838 0.97073 1.02058 1.21517 0.95849 0.94371 1.02653 1.21224 0.93256 0.96776 0.98911 0.91550 1.21526 1.01016 0.94895 0.97193 1.21865 1.03162 0.96188 0.99614 1.22698 0.95075 0.83751 0.99961 1.88065 1.20960 1.28685 1.92815 1.23136 0.82661 0.96595 1.01495 1.21750 0.93359 0.89446 0.89197 0.89413 1.86684 1.71283 1.59253 1.19738 1.23197 0.96119 0.92926 1.01048 1.68473 1.12939 1.06128 1.34018 1.23939 0.89125 0.98294 1.00141 1.20432 0.93792 0.92302 0.94568 1.21446 1.12553 1.06264 1.16562 0.92186 1.25846 0.97098 0.95870 0.99830 1.70124 1.32458 1.12116 1.41374 0.85508 0.79095 0.78193 0.78854 1.18637 1.20699 1.20771 1.23527 0.98342 0.94269 0.91251 0.92834 0.92346 0.92917 0.91806 0.91908 0.92420 0.91856 0.91241 0.91237 0.92139 0.91492 0.94289 0.94545 0.91153 0.92878 0.92584 0.92022 0.90977 0.77590 0.93643 0.88540 0.91610 0.90449 0.96343 0.92990 0.94342 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.25 5.93 30.60 0.18 -1.07 16 3 C -0.12 -1.38 4.85 30.60 0.15 -1.23 16 4 C -0.11 -1.27 4.68 30.60 0.14 -1.12 16 5 C -0.08 -1.35 2.22 -10.79 -0.02 -1.38 16 6 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 7 C -0.11 -1.96 5.27 30.59 0.16 -1.80 16 8 C -0.15 -3.61 9.02 71.98 0.65 -2.96 16 9 C 0.06 1.07 5.29 71.98 0.38 1.45 16 10 O -0.39 -9.05 6.99 -144.35 -1.01 -10.06 16 11 C 0.04 0.83 5.57 71.98 0.40 1.23 16 12 C 0.12 3.50 3.45 30.60 0.11 3.60 16 13 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 14 O -0.56 -18.75 11.17 -144.35 -1.61 -20.36 16 15 C 0.00 -0.11 4.64 86.30 0.40 0.29 16 16 N -0.49 -19.71 6.27 -907.02 -5.69 -25.39 16 17 C 0.01 0.56 7.53 86.41 0.65 1.21 16 18 C 0.01 0.42 3.59 -10.89 -0.04 0.38 16 19 C -0.53 -29.11 8.77 25.60 0.22 -28.89 16 20 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 21 C 0.01 0.71 5.46 84.65 0.46 1.17 16 22 N -0.92 -55.09 13.29 21.45 0.28 -54.80 16 23 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 C 0.06 2.60 5.70 86.34 0.49 3.10 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.77 6.72 -2.39 -0.02 0.75 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.08 6.45 -2.39 -0.02 1.07 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 1.94 5.74 -2.38 -0.01 1.93 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.38 10.47 8.67 -74.06 -0.64 9.83 16 47 H 0.05 1.32 7.69 -2.39 -0.02 1.31 16 48 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.54 7.74 -2.39 -0.02 2.52 16 50 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 51 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 53 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 54 H 0.05 2.41 7.02 -2.39 -0.02 2.39 16 Total: -1.00 -64.34 417.61 -0.77 -65.11 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.18 Total: 26.90 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 5.05 Total: -26.83 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -5.40 Total: -80.19 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -2.62 Total: -30.43 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.34 -0.77 -65.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252991284.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.300 kcal (2) G-P(sol) polarization free energy of solvation -64.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds