Wall clock time and date at job start Tue Mar 31 2020 11:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46895 * 109.47260 * 294.99440 * 3 2 1 14 14 C 1.46849 * 111.00369 * 299.19697 * 13 3 2 15 15 C 1.53029 * 109.52359 * 174.19317 * 14 13 3 16 16 C 1.53204 * 109.24802 * 59.31804 * 15 14 13 17 17 C 1.52797 * 109.36162 * 61.73558 * 16 15 14 18 18 C 1.53308 * 108.41801 * 171.33790 * 17 16 15 19 19 C 1.52748 * 108.35418 * 290.00892 * 18 17 16 20 20 C 1.50642 * 110.52314 * 51.22098 * 19 18 17 21 21 C 1.38916 * 117.72781 * 162.49334 * 20 19 18 22 22 C 1.37941 * 120.53737 * 179.48876 * 21 20 19 23 23 C 1.38271 * 119.76930 * 0.04208 * 22 21 20 24 24 C 1.37934 * 119.77189 * 0.07029 * 23 22 21 25 25 C 1.37638 * 122.57782 * 342.18473 * 20 19 18 26 26 C 1.53186 * 109.01595 * 302.16996 * 16 15 14 27 27 C 1.46850 * 110.99959 * 174.99886 * 13 3 2 28 28 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 30 30 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46153 * 294.21097 * 14 13 3 35 35 H 1.08996 * 109.46194 * 54.18037 * 14 13 3 36 36 H 1.08994 * 109.51021 * 299.38473 * 15 14 13 37 37 H 1.09000 * 109.54387 * 179.26967 * 15 14 13 38 38 H 1.09001 * 109.67072 * 291.07240 * 17 16 15 39 39 H 1.09001 * 109.67527 * 51.60262 * 17 16 15 40 40 H 1.09002 * 109.68271 * 170.30296 * 18 17 16 41 41 H 1.08999 * 109.69682 * 49.72874 * 18 17 16 42 42 H 1.08994 * 109.26543 * 290.95154 * 19 18 17 43 43 H 1.08996 * 109.26373 * 171.48392 * 19 18 17 44 44 H 1.07997 * 119.73512 * 359.51799 * 21 20 19 45 45 H 1.07998 * 120.11625 * 180.02562 * 22 21 20 46 46 H 1.07995 * 120.11553 * 180.09740 * 23 22 21 47 47 H 1.07997 * 119.72950 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.49988 * 297.86048 * 26 16 15 49 49 H 1.08999 * 109.53536 * 177.75850 * 26 16 15 50 50 H 1.09003 * 109.46172 * 305.78798 * 27 13 3 51 51 H 1.08999 * 109.45450 * 65.76560 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6516 2.0992 -1.2552 14 6 2.2360 1.4099 -2.4127 15 6 1.6960 2.0299 -3.7034 16 6 2.0578 3.5182 -3.7386 17 6 3.5782 3.6702 -3.7356 18 6 3.9182 5.1433 -3.9897 19 6 3.5677 5.4748 -5.4390 20 6 2.1580 5.0464 -5.7526 21 6 1.5522 5.5909 -6.8779 22 6 0.2666 5.2312 -7.2252 23 6 -0.4258 4.3219 -6.4469 24 6 0.1733 3.7819 -5.3280 25 6 1.4675 4.1438 -4.9760 26 6 1.4756 4.2029 -2.4981 27 6 2.0209 3.5204 -1.2418 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8288 -0.0530 2.9544 34 1 3.3208 1.5124 -2.3867 35 1 1.9702 0.3534 -2.3785 36 1 0.6123 1.9178 -3.7354 37 1 2.1395 1.5271 -4.5628 38 1 3.9757 3.3633 -2.7681 39 1 4.0103 3.0526 -4.5230 40 1 4.9826 5.3085 -3.8224 41 1 3.3378 5.7755 -3.3177 42 1 4.2578 4.9553 -6.1037 43 1 3.6599 6.5496 -5.5944 44 1 2.0923 6.3014 -7.4861 45 1 -0.1976 5.6585 -8.1017 46 1 -1.4320 4.0351 -6.7145 47 1 -0.3682 3.0720 -4.7204 48 1 0.3888 4.1214 -2.5139 49 1 1.7618 5.2546 -2.4942 50 1 1.5983 3.9971 -0.3573 51 1 3.1067 3.6132 -1.2206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:16 Heat of formation + Delta-G solvation = -3.005274 kcal Electronic energy + Delta-G solvation = -27827.839782 eV Core-core repulsion = 24497.078889 eV Total energy + Delta-G solvation = -3330.760892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84479 -39.55243 -37.32634 -35.52568 -34.03044 -32.95570 -31.61461 -31.04211 -30.63068 -28.66783 -27.12348 -25.18889 -24.26472 -23.88747 -23.72259 -22.58622 -21.27726 -20.58756 -19.13212 -18.10480 -17.58523 -16.98901 -16.45221 -16.30086 -16.08911 -15.59017 -15.15611 -15.10028 -14.89887 -14.72536 -14.57484 -14.28385 -14.00479 -13.59928 -13.56827 -13.33825 -13.21291 -13.03406 -12.93477 -12.80076 -12.71265 -12.47806 -12.24251 -12.21621 -12.03273 -11.97159 -11.89912 -11.64384 -11.53585 -11.35147 -11.12816 -11.04057 -10.79190 -10.69299 -10.39177 -9.54474 -9.35050 -8.81193 -7.99258 -6.22635 0.56757 0.57772 1.37217 1.38282 1.44983 2.40644 2.93817 3.17507 3.44237 3.71788 3.74768 3.85804 4.04088 4.12889 4.24874 4.32312 4.33141 4.40592 4.49102 4.57344 4.58250 4.59984 4.68766 4.72908 4.75813 4.80903 4.87242 4.88684 4.92960 4.94165 5.07024 5.08835 5.11391 5.16950 5.19091 5.24735 5.26621 5.30853 5.34131 5.42699 5.44312 5.47861 5.53873 5.58310 5.66392 5.72363 5.76601 5.83144 5.92184 6.10452 6.24311 6.26153 6.44745 6.76378 6.99786 7.48012 8.93980 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.004241 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.264901 B = 6601.349351 C = 7678.545695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.526 5.526 14 C 0.065 3.935 15 C -0.095 4.095 16 C -0.006 4.006 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.074 4.074 20 C -0.088 4.088 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.070 4.070 26 C -0.087 4.087 27 C 0.066 3.934 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.260 0.740 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.121 0.879 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 9.635 -18.075 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.250 5.250 14 C -0.063 4.063 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.070 4.070 26 C -0.125 4.125 27 C -0.063 4.063 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.154 0.846 47 H 0.139 0.861 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.636 9.515 -17.935 20.825 hybrid contribution 1.959 -0.347 0.977 2.216 sum -2.677 9.168 -16.958 19.462 Atomic orbital electron populations 1.21560 0.96361 0.99694 1.00626 1.21468 0.94448 0.98302 1.00303 1.19017 0.91702 0.91405 0.86564 0.98146 1.21934 0.94117 1.37514 1.04933 0.93284 1.25571 1.01419 0.95090 0.95646 1.69996 1.36181 1.39175 1.09708 0.85885 0.81942 0.78170 0.77286 1.20080 1.21003 1.19988 1.62344 1.57951 1.01657 1.03048 1.21895 0.96248 0.97765 0.90375 1.21719 1.01353 0.94083 0.96063 1.19354 0.94744 0.94529 0.92016 1.21683 0.94743 0.97480 1.01148 1.21573 1.01511 0.95646 0.96838 1.20473 0.92342 1.01903 0.96398 1.19850 0.96717 0.96798 0.95402 1.21389 0.95842 1.00732 0.96751 1.21352 0.94892 0.98011 1.00344 1.21321 1.00704 0.97713 0.95211 1.21386 0.94919 1.00444 0.97832 1.19579 0.94493 0.97060 0.95829 1.21595 1.00183 0.98336 0.92365 1.21866 0.97590 0.89624 0.97201 0.93665 0.95001 0.92417 0.94834 0.92102 0.93048 0.96300 0.92245 0.90986 0.91669 0.93059 0.92035 0.90950 0.91868 0.90182 0.89393 0.84424 0.84038 0.84592 0.86119 0.91774 0.91300 0.93388 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.80 71.98 0.71 -4.33 16 2 C -0.11 -5.10 5.06 30.59 0.15 -4.94 16 3 C 0.22 10.98 1.74 44.17 0.08 11.05 16 4 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 5 C -0.55 -29.31 7.18 25.60 0.18 -29.13 16 6 H 0.05 2.64 5.84 -2.91 -0.02 2.63 16 7 C 0.02 1.23 5.30 84.66 0.45 1.68 16 8 N -0.91 -52.15 11.30 21.45 0.24 -51.91 16 9 Si 0.94 43.62 29.54 68.60 2.03 45.64 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.53 -21.82 4.10 -875.59 -3.59 -25.41 16 14 C 0.07 2.50 4.56 86.32 0.39 2.89 16 15 C -0.09 -2.88 4.45 30.67 0.14 -2.74 16 16 C -0.01 -0.18 0.39 -52.87 -0.02 -0.20 16 17 C -0.11 -3.22 4.02 30.63 0.12 -3.09 16 18 C -0.12 -2.75 5.93 30.61 0.18 -2.57 16 19 C -0.07 -1.45 5.67 29.75 0.17 -1.28 16 20 C -0.09 -1.96 5.74 -19.86 -0.11 -2.08 16 21 C -0.13 -2.45 9.61 22.36 0.21 -2.23 16 22 C -0.13 -2.30 10.05 22.21 0.22 -2.08 16 23 C -0.13 -2.62 10.05 22.21 0.22 -2.40 16 24 C -0.13 -3.04 8.86 22.36 0.20 -2.85 16 25 C -0.07 -1.76 4.71 -19.84 -0.09 -1.85 16 26 C -0.09 -2.68 4.68 30.66 0.14 -2.53 16 27 C 0.07 2.53 4.87 86.32 0.42 2.96 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 31 H 0.03 1.56 6.05 -2.39 -0.01 1.55 16 32 H 0.06 3.30 5.96 -2.39 -0.01 3.28 16 33 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 34 H 0.02 0.80 5.17 -2.39 -0.01 0.78 16 35 H 0.06 2.37 5.93 -2.39 -0.01 2.35 16 36 H 0.07 2.12 6.28 -2.39 -0.02 2.11 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.76 4.94 -2.39 -0.01 1.74 16 39 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.53 6.25 -2.39 -0.01 1.52 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.14 1.93 8.05 -2.91 -0.02 1.91 16 45 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.12 2.88 6.29 -2.91 -0.02 2.86 16 48 H 0.06 1.97 8.02 -2.39 -0.02 1.96 16 49 H 0.07 1.96 6.40 -2.39 -0.02 1.95 16 50 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 51 H 0.02 0.97 5.11 -2.39 -0.01 0.96 16 Total: -1.00 -58.87 364.49 3.36 -55.51 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.91 Total: 21.89 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 3.77 Total: -45.72 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -3.35 Total: -77.32 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.87 3.36 -55.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.505 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds