Wall clock time and date at job start Tue Mar 31 2020 10:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00031 * 2 1 4 4 H 1.48500 * 109.47021 * 174.36026 * 3 2 1 5 5 H 1.48503 * 109.46610 * 294.35930 * 3 2 1 6 6 H 1.48501 * 109.47102 * 54.35807 * 3 2 1 7 7 C 1.37877 * 119.99947 * 179.97438 * 2 1 3 8 8 C 1.51343 * 120.89248 * 184.38578 * 7 2 1 9 9 C 1.53225 * 108.68633 * 231.22792 * 8 7 2 10 10 C 1.52960 * 109.40425 * 305.47871 * 9 8 7 11 11 H 1.08997 * 109.41396 * 303.49461 * 10 9 8 12 12 N 1.46898 * 109.35412 * 183.67328 * 10 9 8 13 13 C 1.46895 * 111.00442 * 80.59878 * 12 10 9 14 14 H 1.09000 * 109.47209 * 329.25705 * 13 12 10 15 15 C 1.52999 * 109.47353 * 209.25226 * 13 12 10 16 16 C 1.52997 * 109.47078 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47335 * 60.00251 * 16 15 13 18 18 C 1.52999 * 109.46833 * 299.99899 * 17 16 15 19 19 H 1.09005 * 109.46998 * 299.99895 * 18 17 16 20 20 C 1.50705 * 109.47150 * 180.02562 * 18 17 16 21 21 C 1.38236 * 119.99684 * 299.72628 * 20 18 17 22 22 C 1.38229 * 119.99898 * 179.74822 * 21 20 18 23 23 C 1.38228 * 119.99972 * 0.52141 * 22 21 20 24 24 C 1.38238 * 120.00199 * 359.75554 * 23 22 21 25 25 C 1.38226 * 120.00260 * 120.00039 * 20 18 17 26 26 C 1.52997 * 109.47078 * 59.99943 * 18 17 16 27 27 C 1.52954 * 109.81768 * 63.59936 * 10 9 8 28 28 C 1.51264 * 120.85224 * 4.60875 * 7 2 1 29 29 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46082 * 111.51338 * 8 7 2 31 31 H 1.09001 * 109.79486 * 351.13362 * 8 7 2 32 32 H 1.09003 * 109.47994 * 185.50052 * 9 8 7 33 33 H 1.09000 * 109.48289 * 65.46283 * 9 8 7 34 34 H 1.00897 * 111.00058 * 316.64196 * 12 10 9 35 35 H 1.08996 * 109.46806 * 299.99925 * 15 13 12 36 36 H 1.09002 * 109.46917 * 60.00045 * 15 13 12 37 37 H 1.09005 * 109.47245 * 299.99896 * 16 15 13 38 38 H 1.08997 * 109.47463 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47252 * 180.02562 * 17 16 15 40 40 H 1.08991 * 109.47001 * 59.99696 * 17 16 15 41 41 H 1.08007 * 119.99535 * 359.97438 * 21 20 18 42 42 H 1.08007 * 120.00032 * 180.29895 * 22 21 20 43 43 H 1.08003 * 120.00343 * 179.77258 * 23 22 21 44 44 H 1.08001 * 120.00324 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00084 * 359.97438 * 25 20 18 46 46 H 1.09003 * 109.47162 * 180.02562 * 26 18 17 47 47 H 1.08996 * 109.47232 * 60.00347 * 26 18 17 48 48 H 1.08996 * 109.48514 * 176.41946 * 27 10 9 49 49 H 1.09009 * 109.48973 * 56.38806 * 27 10 9 50 50 H 1.08998 * 109.62671 * 8.95762 * 28 7 2 51 51 H 1.08999 * 109.62954 * 248.58276 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7033 1.3498 0.1376 5 1 1.9965 2.3351 -1.2755 6 1 1.7901 2.4544 1.1378 7 6 2.0045 -1.1941 0.0005 8 6 3.5144 -1.2195 0.0999 9 6 4.0662 -2.0932 -1.0315 10 6 3.4074 -3.4725 -0.9759 11 1 3.5728 -3.9136 0.0070 12 7 4.0003 -4.3370 -2.0050 13 6 5.2834 -4.8907 -1.5523 14 1 5.7658 -4.1843 -0.8767 15 6 6.1872 -5.1382 -2.7618 16 6 7.5233 -5.7155 -2.2903 17 6 7.2783 -7.0363 -1.5580 18 6 6.3745 -6.7888 -0.3485 19 1 6.8572 -6.0827 0.3273 20 6 6.1336 -8.0896 0.3733 21 6 5.5237 -9.1419 -0.2838 22 6 5.3075 -10.3368 0.3766 23 6 5.6914 -10.4760 1.6972 24 6 6.2961 -9.4218 2.3560 25 6 6.5174 -8.2287 1.6938 26 6 5.0384 -6.2115 -0.8200 27 6 1.9045 -3.3399 -1.2272 28 6 1.2714 -2.5131 -0.1032 29 1 -0.4850 0.8400 -0.0004 30 1 3.8080 -1.6383 1.0623 31 1 3.9077 -0.2073 0.0058 32 1 5.1447 -2.2004 -0.9151 33 1 3.8488 -1.6249 -1.9915 34 1 4.1082 -3.8401 -2.8765 35 1 5.7047 -5.8446 -3.4373 36 1 6.3614 -4.1973 -3.2838 37 1 8.0060 -5.0094 -1.6145 38 1 8.1674 -5.8914 -3.1518 39 1 8.2302 -7.4473 -1.2217 40 1 6.7957 -7.7423 -2.2337 41 1 5.2195 -9.0315 -1.3142 42 1 4.8353 -11.1606 -0.1382 43 1 5.5191 -11.4084 2.2144 44 1 6.5957 -9.5304 3.3879 45 1 6.9904 -7.4053 2.2084 46 1 4.3946 -6.0347 0.0417 47 1 4.5557 -6.9176 -1.4957 48 1 1.4508 -4.3307 -1.2496 49 1 1.7381 -2.8423 -2.1827 50 1 0.2208 -2.3312 -0.3297 51 1 1.3543 -3.0533 0.8399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256108100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:56 Heat of formation + Delta-G solvation = -13.238557 kcal Electronic energy + Delta-G solvation = -26401.319296 eV Core-core repulsion = 23070.114655 eV Total energy + Delta-G solvation = -3331.204641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02185 -38.47289 -36.89923 -34.03768 -32.52282 -31.48145 -31.00193 -29.63112 -29.12282 -28.51696 -25.95914 -23.59496 -22.72854 -22.40406 -21.43345 -21.09621 -20.62235 -19.51985 -19.14804 -17.02281 -16.22626 -15.57777 -15.32310 -14.84416 -14.68881 -14.59377 -14.34615 -14.08551 -13.79347 -13.36784 -13.18623 -12.98947 -12.90016 -12.72639 -12.42776 -12.29807 -12.15828 -11.85317 -11.54390 -11.44939 -11.34881 -11.23997 -10.97793 -10.91602 -10.78317 -10.69749 -10.50836 -10.13837 -10.11599 -9.94082 -9.75531 -9.33401 -9.01264 -8.84650 -8.77174 -8.66205 -8.40912 -7.72362 -6.05665 -3.95705 1.27213 1.30791 3.26618 3.35397 3.36704 3.68771 4.38151 4.40744 4.55751 4.68360 4.81476 4.88497 4.97994 5.00948 5.14069 5.19332 5.23167 5.35212 5.44893 5.47771 5.50438 5.51870 5.54841 5.65064 5.80330 5.84882 5.90416 5.96983 5.97725 6.03983 6.11368 6.16578 6.19231 6.27285 6.34535 6.39663 6.41178 6.46215 6.55163 6.63479 6.77879 6.87934 6.91539 6.93918 6.99968 7.14907 7.26583 7.45034 7.65142 7.72484 7.78964 7.92449 7.99121 8.46014 9.02840 9.59172 11.03745 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003032 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.722041 B = 9231.617856 C = 9887.544432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.483 4.483 8 C -0.024 4.024 9 C -0.134 4.134 10 C 0.101 3.899 11 H 0.064 0.936 12 N -0.687 5.687 13 C 0.087 3.913 14 H 0.044 0.956 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.050 4.050 19 H 0.075 0.925 20 C -0.068 4.068 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.093 4.093 27 C -0.093 4.093 28 C 0.010 3.990 29 H 0.262 0.738 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.335 0.665 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.036 0.964 49 H 0.045 0.955 50 H 0.055 0.945 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.051 -17.213 -1.934 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.502 4.502 8 C -0.062 4.062 9 C -0.173 4.173 10 C -0.008 4.008 11 H 0.082 0.918 12 N -0.317 5.317 13 C -0.023 4.023 14 H 0.062 0.938 15 C -0.160 4.160 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.069 4.069 19 H 0.093 0.907 20 C -0.068 4.068 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.028 4.028 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 14.508 -17.652 -1.757 22.916 hybrid contribution 0.931 1.742 -0.018 1.975 sum 15.439 -15.910 -1.775 22.241 Atomic orbital electron populations 1.69864 1.06131 1.26646 1.50205 1.24849 0.94667 0.98479 0.94832 0.86792 0.81054 0.83843 0.77726 1.18053 1.21020 1.21225 1.20077 0.89551 0.91652 1.48923 1.19951 0.96604 0.96113 0.93526 1.22226 0.96358 0.97563 1.01145 1.21506 0.95668 0.90148 0.93479 0.91768 1.60782 1.23817 1.40469 1.06596 1.21454 0.89614 0.95616 0.95570 0.93752 1.21757 0.95385 1.00989 0.97857 1.21495 0.97128 0.96903 0.99865 1.21577 0.99063 0.97486 0.96355 1.20227 0.97075 0.93231 0.96358 0.90656 1.19911 0.97409 0.95451 0.94029 1.21028 0.98990 0.92907 1.00132 1.21137 1.00097 0.97623 0.94951 1.21111 0.99725 0.98877 0.95037 1.21125 0.99428 0.93513 0.99743 1.21105 1.00578 0.97678 0.94309 1.21554 0.95001 0.96456 1.00131 1.21570 0.92862 0.98059 1.00704 1.19372 0.98108 0.93062 0.92289 0.92763 0.96859 0.94253 0.95529 0.93179 0.84746 0.91315 0.92231 0.92048 0.91973 0.92194 0.91740 0.86063 0.86287 0.86426 0.86303 0.86218 0.91852 0.91370 0.94575 0.93605 0.92670 0.98021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 12.75 55.43 0.71 -25.31 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.88 20.98 28.02 -169.99 -4.76 16.21 16 4 H -0.26 -5.82 5.43 56.52 0.31 -5.51 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.48 -12.87 5.53 -98.89 -0.55 -13.42 16 8 C -0.02 -0.56 5.60 -27.45 -0.15 -0.72 16 9 C -0.13 -2.70 5.19 -26.64 -0.14 -2.84 16 10 C 0.10 1.94 2.20 -67.76 -0.15 1.79 16 11 H 0.06 1.31 7.45 -51.93 -0.39 0.92 16 12 N -0.69 -10.93 6.05 -99.79 -0.60 -11.54 16 13 C 0.09 1.18 2.26 -67.71 -0.15 1.03 16 14 H 0.04 0.66 6.79 -51.93 -0.35 0.31 16 15 C -0.12 -1.35 5.15 -26.73 -0.14 -1.48 16 16 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 17 C -0.11 -1.01 5.02 -26.73 -0.13 -1.15 16 18 C -0.05 -0.54 2.36 -91.77 -0.22 -0.76 16 19 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 20 C -0.07 -0.75 4.78 -104.62 -0.50 -1.25 16 21 C -0.11 -1.19 8.71 -39.59 -0.34 -1.54 16 22 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.27 9.67 -39.59 -0.38 -1.65 16 26 C -0.09 -1.20 4.55 -26.73 -0.12 -1.32 16 27 C -0.09 -2.04 5.55 -26.64 -0.15 -2.18 16 28 C 0.01 0.24 5.94 -27.49 -0.16 0.08 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.93 4.30 -51.93 -0.22 0.70 16 32 H 0.03 0.48 7.11 -51.93 -0.37 0.12 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.33 5.12 8.10 -39.29 -0.32 4.81 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.60 7.41 -51.93 -0.38 0.21 16 41 H 0.12 1.18 7.11 -52.48 -0.37 0.80 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.12 1.14 7.95 -52.48 -0.42 0.72 16 46 H 0.06 0.95 7.70 -51.93 -0.40 0.55 16 47 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 50 H 0.05 1.54 7.11 -51.93 -0.37 1.17 16 51 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -28.38 380.66 -12.77 -41.15 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -9.11 Total: 3.23 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -4.74 Total: -29.49 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.10 Total: -36.84 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.76 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.38 -12.77 -41.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256108100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.915 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds