Wall clock time and date at job start Tue Mar 31 2020 10:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00031 * 2 1 4 4 H 1.48500 * 109.47021 * 174.36026 * 3 2 1 5 5 H 1.48503 * 109.46610 * 294.35930 * 3 2 1 6 6 H 1.48501 * 109.47102 * 54.35807 * 3 2 1 7 7 C 1.37877 * 119.99947 * 179.97438 * 2 1 3 8 8 C 1.51343 * 120.89248 * 184.38578 * 7 2 1 9 9 C 1.53225 * 108.68633 * 231.22792 * 8 7 2 10 10 C 1.52960 * 109.40425 * 305.47871 * 9 8 7 11 11 H 1.08997 * 109.41396 * 303.49461 * 10 9 8 12 12 N 1.46898 * 109.35412 * 183.67328 * 10 9 8 13 13 C 1.46895 * 111.00442 * 80.59878 * 12 10 9 14 14 H 1.09000 * 109.47209 * 329.25705 * 13 12 10 15 15 C 1.52999 * 109.47353 * 209.25226 * 13 12 10 16 16 C 1.52997 * 109.47078 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47335 * 60.00251 * 16 15 13 18 18 C 1.52999 * 109.46833 * 299.99899 * 17 16 15 19 19 H 1.09005 * 109.46998 * 299.99895 * 18 17 16 20 20 C 1.50705 * 109.47150 * 180.02562 * 18 17 16 21 21 C 1.38236 * 119.99684 * 299.72628 * 20 18 17 22 22 C 1.38229 * 119.99898 * 179.74822 * 21 20 18 23 23 C 1.38228 * 119.99972 * 0.52141 * 22 21 20 24 24 C 1.38238 * 120.00199 * 359.75554 * 23 22 21 25 25 C 1.38226 * 120.00260 * 120.00039 * 20 18 17 26 26 C 1.52997 * 109.47078 * 59.99943 * 18 17 16 27 27 C 1.52954 * 109.81768 * 63.59936 * 10 9 8 28 28 C 1.51264 * 120.85224 * 4.60875 * 7 2 1 29 29 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46082 * 111.51338 * 8 7 2 31 31 H 1.09001 * 109.79486 * 351.13362 * 8 7 2 32 32 H 1.09003 * 109.47994 * 185.50052 * 9 8 7 33 33 H 1.09000 * 109.48289 * 65.46283 * 9 8 7 34 34 H 1.00897 * 111.00058 * 316.64196 * 12 10 9 35 35 H 1.08996 * 109.46806 * 299.99925 * 15 13 12 36 36 H 1.09002 * 109.46917 * 60.00045 * 15 13 12 37 37 H 1.09005 * 109.47245 * 299.99896 * 16 15 13 38 38 H 1.08997 * 109.47463 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47252 * 180.02562 * 17 16 15 40 40 H 1.08991 * 109.47001 * 59.99696 * 17 16 15 41 41 H 1.08007 * 119.99535 * 359.97438 * 21 20 18 42 42 H 1.08007 * 120.00032 * 180.29895 * 22 21 20 43 43 H 1.08003 * 120.00343 * 179.77258 * 23 22 21 44 44 H 1.08001 * 120.00324 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00084 * 359.97438 * 25 20 18 46 46 H 1.09003 * 109.47162 * 180.02562 * 26 18 17 47 47 H 1.08996 * 109.47232 * 60.00347 * 26 18 17 48 48 H 1.08996 * 109.48514 * 176.41946 * 27 10 9 49 49 H 1.09009 * 109.48973 * 56.38806 * 27 10 9 50 50 H 1.08998 * 109.62671 * 8.95762 * 28 7 2 51 51 H 1.08999 * 109.62954 * 248.58276 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7033 1.3498 0.1376 5 1 1.9965 2.3351 -1.2755 6 1 1.7901 2.4544 1.1378 7 6 2.0045 -1.1941 0.0005 8 6 3.5144 -1.2195 0.0999 9 6 4.0662 -2.0932 -1.0315 10 6 3.4074 -3.4725 -0.9759 11 1 3.5728 -3.9136 0.0070 12 7 4.0003 -4.3370 -2.0050 13 6 5.2834 -4.8907 -1.5523 14 1 5.7658 -4.1843 -0.8767 15 6 6.1872 -5.1382 -2.7618 16 6 7.5233 -5.7155 -2.2903 17 6 7.2783 -7.0363 -1.5580 18 6 6.3745 -6.7888 -0.3485 19 1 6.8572 -6.0827 0.3273 20 6 6.1336 -8.0896 0.3733 21 6 5.5237 -9.1419 -0.2838 22 6 5.3075 -10.3368 0.3766 23 6 5.6914 -10.4760 1.6972 24 6 6.2961 -9.4218 2.3560 25 6 6.5174 -8.2287 1.6938 26 6 5.0384 -6.2115 -0.8200 27 6 1.9045 -3.3399 -1.2272 28 6 1.2714 -2.5131 -0.1032 29 1 -0.4850 0.8400 -0.0004 30 1 3.8080 -1.6383 1.0623 31 1 3.9077 -0.2073 0.0058 32 1 5.1447 -2.2004 -0.9151 33 1 3.8488 -1.6249 -1.9915 34 1 4.1082 -3.8401 -2.8765 35 1 5.7047 -5.8446 -3.4373 36 1 6.3614 -4.1973 -3.2838 37 1 8.0060 -5.0094 -1.6145 38 1 8.1674 -5.8914 -3.1518 39 1 8.2302 -7.4473 -1.2217 40 1 6.7957 -7.7423 -2.2337 41 1 5.2195 -9.0315 -1.3142 42 1 4.8353 -11.1606 -0.1382 43 1 5.5191 -11.4084 2.2144 44 1 6.5957 -9.5304 3.3879 45 1 6.9904 -7.4053 2.2084 46 1 4.3946 -6.0347 0.0417 47 1 4.5557 -6.9176 -1.4957 48 1 1.4508 -4.3307 -1.2496 49 1 1.7381 -2.8423 -2.1827 50 1 0.2208 -2.3312 -0.3297 51 1 1.3543 -3.0533 0.8399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256108100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:55 Heat of formation + Delta-G solvation = -25.952084 kcal Electronic energy + Delta-G solvation = -26401.870596 eV Core-core repulsion = 23070.114655 eV Total energy + Delta-G solvation = -3331.755941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89509 -39.61212 -38.27117 -35.54330 -33.75859 -32.89371 -31.74310 -31.47340 -30.34836 -29.55820 -27.53626 -24.43936 -23.93190 -23.47703 -23.13094 -22.46220 -21.62616 -20.93061 -20.34616 -18.16858 -17.72350 -16.57846 -16.38113 -16.19384 -16.10871 -15.77103 -15.50514 -15.05753 -14.87194 -14.64786 -14.48570 -14.21497 -14.11602 -14.03496 -13.93732 -13.73833 -13.35456 -13.15404 -12.87897 -12.75970 -12.66130 -12.45308 -12.21890 -12.13904 -12.09808 -11.86924 -11.77525 -11.62462 -11.39399 -11.25089 -11.15206 -10.94103 -10.69786 -10.60293 -10.49216 -9.77108 -9.53148 -9.12657 -8.15784 -6.10417 0.50823 0.54861 1.37013 1.40160 1.48856 2.40933 2.91464 3.07974 3.29389 3.68828 3.80981 3.97852 4.10367 4.16125 4.19916 4.24651 4.30893 4.33466 4.37794 4.48073 4.55061 4.58239 4.63265 4.64971 4.70569 4.74112 4.75127 4.77240 5.01786 5.04450 5.07260 5.08529 5.11761 5.15894 5.22282 5.26721 5.28152 5.28795 5.30822 5.35068 5.40852 5.47868 5.54630 5.58386 5.63802 5.64111 5.67305 5.78951 5.82474 5.84714 6.18008 6.31266 6.37456 6.66476 6.96539 7.47384 8.95150 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003032 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.722041 B = 9231.617856 C = 9887.544432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.233 1.233 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.495 4.495 8 C -0.026 4.026 9 C -0.125 4.125 10 C 0.115 3.885 11 H 0.053 0.947 12 N -0.685 5.685 13 C 0.088 3.912 14 H 0.035 0.965 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.043 4.043 19 H 0.071 0.929 20 C -0.082 4.082 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.086 4.086 27 C -0.083 4.083 28 C 0.007 3.993 29 H 0.262 0.738 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.342 0.658 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.035 0.965 47 H 0.066 0.934 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.021 0.979 51 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.839 -18.179 -2.712 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.157 1.157 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.514 4.514 8 C -0.064 4.064 9 C -0.165 4.165 10 C 0.005 3.995 11 H 0.071 0.929 12 N -0.315 5.315 13 C -0.021 4.021 14 H 0.053 0.947 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.140 4.140 18 C -0.062 4.062 19 H 0.089 0.911 20 C -0.082 4.082 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.031 4.031 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.039 0.961 51 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 17.326 -18.635 -2.541 25.572 hybrid contribution 0.004 1.928 0.283 1.948 sum 17.330 -16.707 -2.259 24.178 Atomic orbital electron populations 1.70014 1.07848 1.27329 1.52306 1.25689 0.95374 1.02069 0.95022 0.85859 0.80969 0.79563 0.77427 1.15749 1.20928 1.21475 1.20672 0.91546 0.91783 1.47441 1.19960 0.94471 0.97118 0.94825 1.22116 0.97776 0.97052 0.99540 1.21165 0.93901 0.90423 0.93965 0.92895 1.60668 1.25519 1.39389 1.05893 1.21525 0.88679 0.95263 0.96663 0.94732 1.21708 0.95587 1.01509 0.96551 1.21480 0.96356 0.96599 1.00510 1.21543 0.99064 0.97700 0.95652 1.20138 0.96011 0.93059 0.96949 0.91054 1.20005 0.98148 0.95659 0.94399 1.21190 0.99273 0.93262 1.00574 1.21438 0.99899 0.97923 0.95321 1.21442 0.99105 0.99683 0.95120 1.21419 0.99189 0.93303 1.00698 1.21315 1.01115 0.98439 0.94468 1.21459 0.95811 0.96286 0.98865 1.21373 0.94852 0.97392 0.98489 1.19333 0.96642 0.93919 0.93220 0.92938 0.96917 0.93928 0.92963 0.93331 0.83982 0.90968 0.91736 0.92093 0.90155 0.91335 0.91384 0.85576 0.84461 0.84302 0.84540 0.85682 0.94610 0.91571 0.93930 0.94393 0.96064 0.99045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 12.75 21.45 0.27 -56.13 16 2 C 0.02 0.89 5.46 84.66 0.46 1.36 16 3 Si 0.94 43.10 28.02 68.60 1.92 45.02 16 4 H -0.23 -9.82 5.43 99.48 0.54 -9.28 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.50 -26.67 5.53 -16.15 -0.09 -26.76 16 8 C -0.03 -1.18 5.60 30.13 0.17 -1.01 16 9 C -0.13 -4.84 5.19 30.66 0.16 -4.68 16 10 C 0.12 4.34 2.20 44.89 0.10 4.44 16 11 H 0.05 2.14 7.45 -2.39 -0.02 2.12 16 12 N -0.68 -20.76 6.05 -469.63 -2.84 -23.60 16 13 C 0.09 2.23 2.26 44.92 0.10 2.33 16 14 H 0.03 0.96 6.79 -2.39 -0.02 0.95 16 15 C -0.12 -2.23 5.15 30.59 0.16 -2.08 16 16 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 17 C -0.10 -1.69 5.02 30.59 0.15 -1.54 16 18 C -0.04 -0.87 2.36 -11.54 -0.03 -0.90 16 19 H 0.07 1.50 7.88 -2.38 -0.02 1.48 16 20 C -0.08 -1.74 4.78 -19.87 -0.09 -1.83 16 21 C -0.13 -2.50 8.71 22.27 0.19 -2.31 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 25 C -0.14 -2.77 9.67 22.27 0.22 -2.56 16 26 C -0.09 -2.14 4.55 30.59 0.14 -2.00 16 27 C -0.08 -3.63 5.55 30.66 0.17 -3.46 16 28 C 0.01 0.36 5.94 30.10 0.18 0.54 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 1.91 4.30 -2.39 -0.01 1.90 16 32 H 0.05 1.76 7.11 -2.39 -0.02 1.75 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.34 9.71 8.10 -89.70 -0.73 8.99 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.09 7.41 -2.39 -0.02 1.08 16 41 H 0.13 2.30 7.11 -2.91 -0.02 2.28 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.13 2.30 7.95 -2.91 -0.02 2.27 16 46 H 0.04 1.07 7.70 -2.39 -0.02 1.06 16 47 H 0.07 1.66 7.38 -2.39 -0.02 1.64 16 48 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.02 1.23 7.11 -2.39 -0.02 1.21 16 51 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -62.10 380.66 2.19 -59.91 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.00 Total: 23.15 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 2.84 Total: -48.35 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.57 Total: -79.73 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.92 Total: 45.02 kcal Total: -62.10 2.19 -59.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256108100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.954 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds