Wall clock time and date at job start Tue Mar 31 2020 10:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47104 * 174.66441 * 3 2 1 5 5 H 1.48500 * 109.47247 * 294.66912 * 3 2 1 6 6 H 1.48499 * 109.46690 * 54.66562 * 3 2 1 7 7 C 1.37877 * 119.99469 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.85465 * 348.87662 * 7 2 1 9 9 C 1.53231 * 108.48367 * 231.36744 * 8 7 2 10 10 C 1.52956 * 109.40296 * 305.26344 * 9 8 7 11 11 H 1.09009 * 109.40849 * 303.63531 * 10 9 8 12 12 N 1.46894 * 109.41699 * 183.77648 * 10 9 8 13 13 C 1.46906 * 111.00208 * 84.85492 * 12 10 9 14 14 H 1.08996 * 109.46847 * 325.00596 * 13 12 10 15 15 C 1.53000 * 109.46723 * 85.00081 * 13 12 10 16 16 C 1.52999 * 109.47115 * 60.00092 * 15 13 12 17 17 C 1.53000 * 109.47076 * 59.99843 * 16 15 13 18 18 C 1.53000 * 109.47277 * 300.00057 * 17 16 15 19 19 H 1.08998 * 109.46607 * 299.99840 * 18 17 16 20 20 C 1.50702 * 109.47174 * 179.97438 * 18 17 16 21 21 C 1.38234 * 119.99874 * 120.00006 * 20 18 17 22 22 C 1.38234 * 119.99851 * 180.25732 * 21 20 18 23 23 C 1.38239 * 120.00012 * 359.50666 * 22 21 20 24 24 C 1.38232 * 119.99576 * 0.46890 * 23 22 21 25 25 C 1.38232 * 120.00445 * 359.76794 * 24 23 22 26 26 C 1.52992 * 109.47475 * 205.00035 * 13 12 10 27 27 C 1.52956 * 109.75899 * 63.70177 * 10 9 8 28 28 C 1.51270 * 120.84773 * 168.85097 * 7 2 1 29 29 H 0.97008 * 119.99760 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.61887 * 351.04295 * 8 7 2 31 31 H 1.08998 * 109.62692 * 111.60563 * 8 7 2 32 32 H 1.09001 * 109.42741 * 185.32045 * 9 8 7 33 33 H 1.09001 * 109.54631 * 65.28119 * 9 8 7 34 34 H 1.00901 * 111.00252 * 208.81388 * 12 10 9 35 35 H 1.09000 * 109.47347 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.47181 * 300.00280 * 15 13 12 37 37 H 1.09002 * 109.47088 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47487 * 299.99588 * 16 15 13 39 39 H 1.09002 * 109.47086 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.46792 * 60.00226 * 17 16 15 41 41 H 1.08000 * 120.00035 * 359.97438 * 21 20 18 42 42 H 1.07994 * 119.99984 * 179.72728 * 22 21 20 43 43 H 1.07996 * 120.00085 * 180.25776 * 23 22 21 44 44 H 1.08000 * 119.99651 * 179.78450 * 24 23 22 45 45 H 1.08006 * 120.00170 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47477 * 180.02562 * 26 13 12 47 47 H 1.09002 * 109.46824 * 60.00075 * 26 13 12 48 48 H 1.08998 * 109.47962 * 56.34936 * 27 10 9 49 49 H 1.09000 * 109.48576 * 176.38822 * 27 10 9 50 50 H 1.08994 * 109.62662 * 8.96472 * 28 7 2 51 51 H 1.08994 * 109.63115 * 248.38812 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7040 1.3492 0.1302 5 1 1.9907 2.3385 -1.2723 6 1 1.7955 2.4511 1.1422 7 6 2.0044 -1.1941 -0.0005 8 6 1.2887 -2.5031 0.2494 9 6 2.0333 -3.2608 1.3537 10 6 3.5041 -3.4130 0.9625 11 1 3.5721 -3.9122 -0.0042 12 7 4.1986 -4.2169 1.9770 13 6 4.0404 -5.6528 1.7099 14 1 3.0512 -5.8376 1.2912 15 6 5.1089 -6.1068 0.7134 16 6 6.4975 -5.8473 1.3010 17 6 6.6528 -6.6293 2.6069 18 6 5.5843 -6.1752 3.6035 19 1 5.7018 -5.1099 3.8017 20 6 5.7369 -6.9459 4.8895 21 6 5.9868 -6.2748 6.0719 22 6 6.1321 -6.9820 7.2507 23 6 6.0174 -8.3597 7.2488 24 6 5.7670 -9.0306 6.0665 25 6 5.6266 -8.3238 4.8869 26 6 4.1957 -6.4347 3.0157 27 6 4.1599 -2.0343 0.8700 28 6 3.4957 -1.2288 -0.2517 29 1 -0.4850 0.8401 0.0004 30 1 0.2649 -2.3056 0.5673 31 1 1.2829 -3.0976 -0.6642 32 1 1.5871 -4.2471 1.4809 33 1 1.9614 -2.7058 2.2890 34 1 5.1740 -3.9648 2.0327 35 1 4.9913 -7.1721 0.5147 36 1 4.9983 -5.5497 -0.2170 37 1 7.2587 -6.1712 0.5913 38 1 6.6149 -4.7820 1.4993 39 1 7.6423 -6.4448 3.0254 40 1 6.5355 -7.6946 2.4086 41 1 6.0731 -5.1982 6.0740 42 1 6.3317 -6.4581 8.1737 43 1 6.1268 -8.9119 8.1704 44 1 5.6808 -10.1072 6.0644 45 1 5.4313 -8.8481 3.9630 46 1 4.0788 -7.5001 2.8174 47 1 3.4345 -6.1112 3.7256 48 1 4.0366 -1.5088 1.8169 49 1 5.2220 -2.1505 0.6541 50 1 3.8900 -0.2127 -0.2556 51 1 3.6944 -1.7053 -1.2116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256108103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:05 Heat of formation + Delta-G solvation = -9.014607 kcal Electronic energy + Delta-G solvation = -26562.134259 eV Core-core repulsion = 23231.112783 eV Total energy + Delta-G solvation = -3331.021477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14934 -38.63413 -36.72713 -33.84017 -32.35614 -31.40432 -31.00818 -29.54067 -29.41747 -28.52678 -26.06764 -23.56076 -22.73047 -22.42196 -21.73863 -21.34439 -20.64585 -19.16134 -18.55045 -17.07931 -16.12272 -15.82374 -15.31854 -14.95728 -14.71966 -14.64296 -14.39212 -13.91744 -13.63915 -13.42965 -13.33716 -13.10425 -12.70382 -12.51375 -12.42121 -12.24875 -12.12547 -11.95593 -11.90899 -11.48536 -11.33694 -11.10689 -11.06099 -10.85474 -10.67820 -10.54577 -10.33372 -10.19800 -10.10076 -9.95638 -9.80159 -9.29836 -9.02412 -8.84444 -8.73573 -8.56811 -8.33929 -7.81599 -6.06214 -3.94074 1.26854 1.29735 3.28697 3.38480 3.38891 3.68597 4.42427 4.52662 4.56513 4.71568 4.80332 4.86930 4.93488 4.99026 5.12257 5.21374 5.22993 5.35702 5.40762 5.46688 5.52537 5.55646 5.63081 5.68516 5.78371 5.86164 5.89835 5.96937 5.98440 6.02720 6.10963 6.17275 6.25785 6.29813 6.32588 6.39209 6.40634 6.47374 6.61639 6.64876 6.75936 6.88780 6.91427 6.95958 7.03043 7.15861 7.20094 7.48689 7.69031 7.75118 7.83050 7.91058 7.99511 8.46230 9.02879 9.60138 11.03569 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002897 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.212185 B = 9663.044735 C = 9987.643596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.484 4.484 8 C 0.010 3.990 9 C -0.092 4.092 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.683 5.683 13 C 0.088 3.912 14 H 0.078 0.922 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.048 4.048 19 H 0.086 0.914 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.093 4.093 27 C -0.107 4.107 28 C -0.023 4.023 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.000 1.000 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.331 0.669 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.025 0.975 50 H 0.040 0.960 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.702 -16.201 9.397 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.181 1.181 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.503 4.503 8 C -0.028 4.028 9 C -0.130 4.130 10 C -0.008 4.008 11 H 0.049 0.951 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.096 0.904 15 C -0.189 4.189 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.066 4.066 19 H 0.105 0.895 20 C -0.066 4.066 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.131 4.131 27 C -0.145 4.145 28 C -0.061 4.061 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 13.009 -16.049 9.848 22.886 hybrid contribution 0.973 0.752 -0.683 1.406 sum 13.982 -15.297 9.166 22.660 Atomic orbital electron populations 1.69908 1.06232 1.26708 1.49713 1.24847 0.94608 0.98526 0.94754 0.86774 0.81107 0.83884 0.77695 1.18136 1.21070 1.21252 1.20031 0.90853 0.92021 1.47387 1.19380 0.97343 0.93526 0.92539 1.21609 0.93102 0.97622 1.00672 1.21434 0.95523 0.92607 0.91190 0.95105 1.60821 1.17630 1.02427 1.50655 1.21531 0.98083 0.88986 0.93695 0.90363 1.22202 0.95674 1.01534 0.99489 1.21517 0.97057 1.00447 0.96680 1.21580 0.98198 0.99857 0.94849 1.20186 0.95653 0.99768 0.91028 0.89538 1.19991 0.97755 0.93760 0.95140 1.21150 1.00042 1.00012 0.92223 1.21142 1.00257 0.94345 0.98050 1.21098 1.01230 0.94604 0.97973 1.21115 1.00308 0.99660 0.92866 1.21009 1.00566 0.93851 0.98030 1.21560 0.95924 0.98708 0.96924 1.21742 0.95731 0.95753 1.01279 1.19928 0.96228 0.96362 0.93578 0.92775 0.92934 0.98189 0.95591 0.92884 0.84867 0.91927 0.91940 0.92104 0.91806 0.92230 0.92081 0.86006 0.86322 0.86506 0.86431 0.86278 0.92349 0.91212 0.92441 0.95613 0.94194 0.96818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 12.82 55.43 0.71 -25.24 16 2 C 0.07 2.07 5.44 -17.82 -0.10 1.98 16 3 Si 0.88 20.98 27.95 -169.99 -4.75 16.23 16 4 H -0.26 -5.84 5.58 56.52 0.32 -5.52 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.48 -12.87 5.48 -98.92 -0.54 -13.41 16 8 C 0.01 0.25 5.93 -27.48 -0.16 0.09 16 9 C -0.09 -1.99 5.43 -26.63 -0.14 -2.13 16 10 C 0.10 1.92 2.21 -67.76 -0.15 1.77 16 11 H 0.03 0.61 7.11 -51.92 -0.37 0.24 16 12 N -0.68 -10.61 5.57 -99.79 -0.56 -11.17 16 13 C 0.09 1.17 2.65 -67.71 -0.18 1.00 16 14 H 0.08 1.17 7.08 -51.93 -0.37 0.81 16 15 C -0.15 -1.76 5.50 -26.73 -0.15 -1.91 16 16 C -0.12 -1.24 5.67 -26.73 -0.15 -1.40 16 17 C -0.11 -1.05 5.02 -26.73 -0.13 -1.18 16 18 C -0.05 -0.52 2.13 -91.77 -0.20 -0.71 16 19 H 0.09 1.03 6.94 -51.93 -0.36 0.67 16 20 C -0.07 -0.71 4.78 -104.62 -0.50 -1.21 16 21 C -0.12 -1.23 9.67 -39.58 -0.38 -1.62 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 25 C -0.12 -1.16 8.71 -39.59 -0.34 -1.51 16 26 C -0.09 -1.10 4.73 -26.73 -0.13 -1.23 16 27 C -0.11 -2.15 5.24 -26.63 -0.14 -2.29 16 28 C -0.02 -0.54 5.65 -27.48 -0.16 -0.69 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.05 1.46 7.19 -51.93 -0.37 1.09 16 31 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.03 0.52 7.37 -51.93 -0.38 0.14 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.33 4.79 5.13 -39.29 -0.20 4.59 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.82 7.42 -51.93 -0.39 0.43 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.71 6.26 -51.93 -0.32 0.39 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 41 H 0.12 1.20 7.95 -52.49 -0.42 0.78 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.12 1.06 7.10 -52.48 -0.37 0.68 16 46 H 0.06 0.63 7.38 -51.93 -0.38 0.24 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.03 0.45 8.05 -51.93 -0.42 0.04 16 50 H 0.04 0.93 4.36 -51.93 -0.23 0.70 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -28.21 374.87 -12.53 -40.74 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.84 Total: 2.92 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -4.75 Total: -29.13 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.15 Total: -36.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.75 Total: 16.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.21 -12.53 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256108103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.728 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds