Wall clock time and date at job start Tue Mar 31 2020 10:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47104 * 174.66441 * 3 2 1 5 5 H 1.48500 * 109.47247 * 294.66912 * 3 2 1 6 6 H 1.48499 * 109.46690 * 54.66562 * 3 2 1 7 7 C 1.37877 * 119.99469 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.85465 * 348.87662 * 7 2 1 9 9 C 1.53231 * 108.48367 * 231.36744 * 8 7 2 10 10 C 1.52956 * 109.40296 * 305.26344 * 9 8 7 11 11 H 1.09009 * 109.40849 * 303.63531 * 10 9 8 12 12 N 1.46894 * 109.41699 * 183.77648 * 10 9 8 13 13 C 1.46906 * 111.00208 * 84.85492 * 12 10 9 14 14 H 1.08996 * 109.46847 * 325.00596 * 13 12 10 15 15 C 1.53000 * 109.46723 * 85.00081 * 13 12 10 16 16 C 1.52999 * 109.47115 * 60.00092 * 15 13 12 17 17 C 1.53000 * 109.47076 * 59.99843 * 16 15 13 18 18 C 1.53000 * 109.47277 * 300.00057 * 17 16 15 19 19 H 1.08998 * 109.46607 * 299.99840 * 18 17 16 20 20 C 1.50702 * 109.47174 * 179.97438 * 18 17 16 21 21 C 1.38234 * 119.99874 * 120.00006 * 20 18 17 22 22 C 1.38234 * 119.99851 * 180.25732 * 21 20 18 23 23 C 1.38239 * 120.00012 * 359.50666 * 22 21 20 24 24 C 1.38232 * 119.99576 * 0.46890 * 23 22 21 25 25 C 1.38232 * 120.00445 * 359.76794 * 24 23 22 26 26 C 1.52992 * 109.47475 * 205.00035 * 13 12 10 27 27 C 1.52956 * 109.75899 * 63.70177 * 10 9 8 28 28 C 1.51270 * 120.84773 * 168.85097 * 7 2 1 29 29 H 0.97008 * 119.99760 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.61887 * 351.04295 * 8 7 2 31 31 H 1.08998 * 109.62692 * 111.60563 * 8 7 2 32 32 H 1.09001 * 109.42741 * 185.32045 * 9 8 7 33 33 H 1.09001 * 109.54631 * 65.28119 * 9 8 7 34 34 H 1.00901 * 111.00252 * 208.81388 * 12 10 9 35 35 H 1.09000 * 109.47347 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.47181 * 300.00280 * 15 13 12 37 37 H 1.09002 * 109.47088 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47487 * 299.99588 * 16 15 13 39 39 H 1.09002 * 109.47086 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.46792 * 60.00226 * 17 16 15 41 41 H 1.08000 * 120.00035 * 359.97438 * 21 20 18 42 42 H 1.07994 * 119.99984 * 179.72728 * 22 21 20 43 43 H 1.07996 * 120.00085 * 180.25776 * 23 22 21 44 44 H 1.08000 * 119.99651 * 179.78450 * 24 23 22 45 45 H 1.08006 * 120.00170 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47477 * 180.02562 * 26 13 12 47 47 H 1.09002 * 109.46824 * 60.00075 * 26 13 12 48 48 H 1.08998 * 109.47962 * 56.34936 * 27 10 9 49 49 H 1.09000 * 109.48576 * 176.38822 * 27 10 9 50 50 H 1.08994 * 109.62662 * 8.96472 * 28 7 2 51 51 H 1.08994 * 109.63115 * 248.38812 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7040 1.3492 0.1302 5 1 1.9907 2.3385 -1.2723 6 1 1.7955 2.4511 1.1422 7 6 2.0044 -1.1941 -0.0005 8 6 1.2887 -2.5031 0.2494 9 6 2.0333 -3.2608 1.3537 10 6 3.5041 -3.4130 0.9625 11 1 3.5721 -3.9122 -0.0042 12 7 4.1986 -4.2169 1.9770 13 6 4.0404 -5.6528 1.7099 14 1 3.0512 -5.8376 1.2912 15 6 5.1089 -6.1068 0.7134 16 6 6.4975 -5.8473 1.3010 17 6 6.6528 -6.6293 2.6069 18 6 5.5843 -6.1752 3.6035 19 1 5.7018 -5.1099 3.8017 20 6 5.7369 -6.9459 4.8895 21 6 5.9868 -6.2748 6.0719 22 6 6.1321 -6.9820 7.2507 23 6 6.0174 -8.3597 7.2488 24 6 5.7670 -9.0306 6.0665 25 6 5.6266 -8.3238 4.8869 26 6 4.1957 -6.4347 3.0157 27 6 4.1599 -2.0343 0.8700 28 6 3.4957 -1.2288 -0.2517 29 1 -0.4850 0.8401 0.0004 30 1 0.2649 -2.3056 0.5673 31 1 1.2829 -3.0976 -0.6642 32 1 1.5871 -4.2471 1.4809 33 1 1.9614 -2.7058 2.2890 34 1 5.1740 -3.9648 2.0327 35 1 4.9913 -7.1721 0.5147 36 1 4.9983 -5.5497 -0.2170 37 1 7.2587 -6.1712 0.5913 38 1 6.6149 -4.7820 1.4993 39 1 7.6423 -6.4448 3.0254 40 1 6.5355 -7.6946 2.4086 41 1 6.0731 -5.1982 6.0740 42 1 6.3317 -6.4581 8.1737 43 1 6.1268 -8.9119 8.1704 44 1 5.6808 -10.1072 6.0644 45 1 5.4313 -8.8481 3.9630 46 1 4.0788 -7.5001 2.8174 47 1 3.4345 -6.1112 3.7256 48 1 4.0366 -1.5088 1.8169 49 1 5.2220 -2.1505 0.6541 50 1 3.8900 -0.2127 -0.2556 51 1 3.6944 -1.7053 -1.2116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256108103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:04 Heat of formation + Delta-G solvation = -21.350715 kcal Electronic energy + Delta-G solvation = -26562.669193 eV Core-core repulsion = 23231.112783 eV Total energy + Delta-G solvation = -3331.556410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04932 -39.65483 -38.20788 -35.28545 -33.69543 -32.68418 -31.71338 -31.40573 -30.68756 -29.43270 -27.70934 -24.37528 -23.77633 -23.49693 -23.38757 -22.80936 -21.56567 -20.88557 -19.57355 -18.07811 -17.79569 -16.86738 -16.40751 -16.11708 -15.91958 -15.90587 -15.58505 -15.11277 -14.73973 -14.58706 -14.51810 -14.17705 -14.08990 -14.05706 -13.90029 -13.60219 -13.26465 -13.09210 -12.95213 -12.79216 -12.70046 -12.43424 -12.23287 -12.13914 -12.10391 -11.85531 -11.78361 -11.72718 -11.27682 -11.19440 -11.08637 -10.90994 -10.72046 -10.54069 -10.35368 -9.74301 -9.48302 -9.13224 -8.16248 -6.08168 0.54256 0.57639 1.38230 1.42599 1.51172 2.42628 2.95955 3.07680 3.38729 3.70420 3.84931 3.91310 4.12380 4.17562 4.21715 4.25344 4.28058 4.36289 4.37320 4.45563 4.59262 4.62303 4.67138 4.71093 4.74810 4.79691 4.80392 4.82281 4.92642 5.03466 5.08185 5.10729 5.17103 5.18874 5.22863 5.25375 5.27443 5.28696 5.30587 5.33527 5.41093 5.50998 5.53953 5.62970 5.65742 5.67517 5.69879 5.80756 5.87633 5.91926 6.21248 6.34765 6.39154 6.72179 6.97586 7.48746 8.95311 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002897 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.212185 B = 9663.044735 C = 9987.643596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.233 1.233 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.496 4.496 8 C 0.008 3.992 9 C -0.080 4.080 10 C 0.114 3.886 11 H 0.027 0.973 12 N -0.682 5.682 13 C 0.086 3.914 14 H 0.059 0.941 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.040 4.040 19 H 0.073 0.927 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.085 4.085 27 C -0.101 4.101 28 C -0.025 4.025 29 H 0.261 0.739 30 H 0.016 0.984 31 H -0.008 1.008 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.342 0.658 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.043 0.957 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.646 -17.629 10.042 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.157 1.157 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.515 4.515 8 C -0.030 4.030 9 C -0.118 4.118 10 C 0.005 3.995 11 H 0.045 0.955 12 N -0.315 5.315 13 C -0.024 4.024 14 H 0.078 0.922 15 C -0.183 4.183 16 C -0.153 4.153 17 C -0.138 4.138 18 C -0.059 4.059 19 H 0.092 0.908 20 C -0.079 4.079 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.063 4.063 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.010 0.990 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.163 0.837 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 15.988 -17.494 10.497 25.920 hybrid contribution -0.002 1.083 -0.862 1.384 sum 15.986 -16.411 9.635 24.854 Atomic orbital electron populations 1.70055 1.07971 1.27357 1.52017 1.25696 0.95301 1.02137 0.95022 0.85846 0.81085 0.79608 0.77331 1.15690 1.21015 1.21616 1.20664 0.92901 0.92134 1.45834 1.19338 0.96093 0.94192 0.93369 1.21398 0.95125 0.97111 0.98200 1.21106 0.93759 0.92881 0.91747 0.95491 1.60672 1.18160 1.03412 1.49265 1.21565 0.97930 0.87777 0.95093 0.92228 1.22126 0.95778 1.02181 0.98210 1.21498 0.96393 1.00204 0.97234 1.21530 0.97974 1.00251 0.94043 1.20068 0.95163 0.99103 0.91534 0.90842 1.20030 0.98625 0.94265 0.94996 1.21308 1.00878 1.00278 0.92836 1.21400 1.00012 0.94911 0.98358 1.21425 1.00487 0.94591 0.98953 1.21433 0.99581 1.00853 0.92628 1.21195 1.00590 0.93610 0.98919 1.21468 0.96220 0.99149 0.95494 1.21628 0.97408 0.95464 0.99454 1.19938 0.94151 0.97297 0.94901 0.92982 0.96489 0.98965 0.94649 0.94609 0.83652 0.90442 0.93243 0.90693 0.92445 0.91658 0.91094 0.86085 0.84840 0.84430 0.84377 0.85215 0.90854 0.93211 0.93337 0.92335 0.93861 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 12.82 21.45 0.28 -56.37 16 2 C 0.02 0.90 5.44 84.66 0.46 1.36 16 3 Si 0.94 43.27 27.95 68.60 1.92 45.19 16 4 H -0.23 -9.80 5.58 99.48 0.56 -9.25 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.50 -26.71 5.48 -16.17 -0.09 -26.80 16 8 C 0.01 0.43 5.93 30.11 0.18 0.60 16 9 C -0.08 -3.52 5.43 30.66 0.17 -3.35 16 10 C 0.11 4.23 2.21 44.89 0.10 4.33 16 11 H 0.03 1.04 7.11 -2.38 -0.02 1.02 16 12 N -0.68 -20.31 5.57 -469.63 -2.62 -22.93 16 13 C 0.09 2.21 2.65 44.91 0.12 2.33 16 14 H 0.06 1.75 7.08 -2.39 -0.02 1.73 16 15 C -0.14 -3.05 5.50 30.59 0.17 -2.88 16 16 C -0.12 -2.08 5.67 30.59 0.17 -1.91 16 17 C -0.10 -1.69 5.02 30.59 0.15 -1.53 16 18 C -0.04 -0.80 2.13 -11.54 -0.02 -0.82 16 19 H 0.07 1.65 6.94 -2.39 -0.02 1.63 16 20 C -0.08 -1.58 4.78 -19.87 -0.09 -1.67 16 21 C -0.13 -2.73 9.67 22.27 0.22 -2.51 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 23 C -0.14 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 25 C -0.13 -2.23 8.71 22.27 0.19 -2.03 16 26 C -0.09 -1.91 4.73 30.59 0.14 -1.76 16 27 C -0.10 -3.89 5.24 30.66 0.16 -3.73 16 28 C -0.02 -1.13 5.65 30.11 0.17 -0.96 16 29 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 30 H 0.02 0.98 7.19 -2.38 -0.02 0.96 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.03 1.46 7.37 -2.39 -0.02 1.44 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.34 9.16 5.13 -89.69 -0.46 8.70 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.19 7.42 -2.39 -0.02 1.18 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.12 6.26 -2.39 -0.01 1.10 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.08 7.39 -2.39 -0.02 1.06 16 41 H 0.12 2.34 7.95 -2.91 -0.02 2.32 16 42 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.13 1.95 7.10 -2.91 -0.02 1.92 16 46 H 0.07 1.42 7.38 -2.39 -0.02 1.41 16 47 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 50 H 0.04 1.92 4.36 -2.39 -0.01 1.91 16 51 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -62.18 374.87 2.73 -59.45 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.29 Total: 21.83 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 2.87 Total: -47.17 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.34 Total: -79.29 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.92 Total: 45.19 kcal Total: -62.18 2.73 -59.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256108103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.096 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds