Wall clock time and date at job start Tue Mar 31 2020 10:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99510 * 2 1 4 4 H 1.48502 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47452 * 300.00187 * 3 2 1 6 6 H 1.48502 * 109.47172 * 60.00253 * 3 2 1 7 7 C 1.37878 * 120.00552 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00171 * 181.11057 * 7 2 1 9 9 C 1.50701 * 119.99474 * 1.11238 * 7 2 1 10 10 N 1.46897 * 110.01651 * 303.12351 * 9 7 2 11 11 C 1.46897 * 111.00308 * 300.57294 * 10 9 7 12 12 H 1.09000 * 109.47264 * 350.67494 * 11 10 9 13 13 C 1.52999 * 109.47374 * 110.67867 * 11 10 9 14 14 C 1.52999 * 109.47241 * 60.00278 * 13 11 10 15 15 C 1.53000 * 109.47274 * 59.99576 * 14 13 11 16 16 C 1.52999 * 109.47332 * 300.00368 * 15 14 13 17 17 H 1.08999 * 109.47217 * 299.99701 * 16 15 14 18 18 C 1.50706 * 109.47028 * 179.97438 * 16 15 14 19 19 C 1.38240 * 120.00063 * 299.73032 * 18 16 15 20 20 C 1.38227 * 119.99717 * 179.78778 * 19 18 16 21 21 C 1.38232 * 120.00157 * 0.46422 * 20 19 18 22 22 C 1.38237 * 120.00117 * 359.76075 * 21 20 19 23 23 C 1.38230 * 119.99665 * 0.03338 * 22 21 20 24 24 C 1.53002 * 109.47168 * 230.68074 * 11 10 9 25 25 C 1.54262 * 110.03556 * 64.51769 * 9 7 2 26 26 C 1.54970 * 104.16029 * 95.75266 * 25 9 7 27 27 C 1.54888 * 102.77438 * 37.88954 * 26 25 9 28 28 C 1.53878 * 110.03114 * 181.73742 * 9 7 2 29 29 H 0.97000 * 120.00692 * 5.01843 * 1 2 3 30 30 H 1.00900 * 111.00027 * 176.61559 * 10 9 7 31 31 H 1.08994 * 109.47034 * 300.00168 * 13 11 10 32 32 H 1.09000 * 109.46960 * 179.97438 * 13 11 10 33 33 H 1.08999 * 109.46943 * 300.00079 * 14 13 11 34 34 H 1.09000 * 109.47337 * 180.02562 * 14 13 11 35 35 H 1.09009 * 109.46653 * 60.00382 * 15 14 13 36 36 H 1.09000 * 109.47380 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.99891 * 359.97438 * 19 18 16 38 38 H 1.08003 * 120.00182 * 180.24705 * 20 19 18 39 39 H 1.08004 * 120.00023 * 179.79293 * 21 20 19 40 40 H 1.07997 * 120.00266 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.00158 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47252 * 59.99485 * 24 11 10 43 43 H 1.09000 * 109.47612 * 179.97438 * 24 11 10 44 44 H 1.08999 * 110.48973 * 214.39976 * 25 9 7 45 45 H 1.09000 * 110.48459 * 337.04613 * 25 9 7 46 46 H 1.09003 * 110.71934 * 279.57560 * 26 25 9 47 47 H 1.08996 * 110.92355 * 156.29693 * 26 25 9 48 48 H 1.09005 * 110.48459 * 203.40955 * 27 26 25 49 49 H 1.08994 * 110.60164 * 80.82332 * 27 26 25 50 50 H 1.09001 * 110.03152 * 359.94614 * 28 9 7 51 51 H 1.08994 * 110.03328 * 121.32973 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0176 9 6 1.2513 -2.4990 -0.0265 10 7 0.3275 -2.5690 1.1135 11 6 1.0530 -2.4643 2.3864 12 1 2.1252 -2.5246 2.1996 13 6 0.7256 -1.1260 3.0516 14 6 -0.7793 -1.0416 3.3141 15 6 -1.2011 -2.1866 4.2371 16 6 -0.8737 -3.5249 3.5719 17 1 -1.4121 -3.6026 2.6273 18 6 -1.2887 -4.6527 4.4813 19 6 -0.7307 -4.7658 5.7410 20 6 -1.1146 -5.7978 6.5768 21 6 -2.0493 -6.7221 6.1493 22 6 -2.6038 -6.6117 4.8879 23 6 -2.2231 -5.5773 4.0537 24 6 0.6313 -3.6094 3.3095 25 6 0.4692 -2.6315 -1.3495 26 6 1.4042 -3.4666 -2.2606 27 6 2.0219 -4.4878 -1.2733 28 6 2.2385 -3.6784 0.0220 29 1 -0.4851 0.8368 -0.0735 30 1 -0.2246 -3.4129 1.0802 31 1 1.0261 -0.3103 2.3941 32 1 1.2637 -1.0486 3.9964 33 1 -1.3177 -1.1192 2.3696 34 1 -1.0126 -0.0879 3.7876 35 1 -0.6627 -2.1090 5.1817 36 1 -2.2732 -2.1262 4.4244 37 1 0.0029 -4.0462 6.0733 38 1 -0.6816 -5.8839 7.5625 39 1 -2.3467 -7.5303 6.8011 40 1 -3.3344 -7.3336 4.5540 41 1 -2.6560 -5.4912 3.0680 42 1 0.8645 -4.5629 2.8356 43 1 1.1700 -3.5321 4.2539 44 1 -0.4718 -3.1566 -1.1854 45 1 0.2881 -1.6492 -1.7856 46 1 2.1782 -2.8368 -2.6995 47 1 0.8360 -3.9764 -3.0385 48 1 2.9731 -4.8594 -1.6544 49 1 1.3339 -5.3143 -1.0962 50 1 3.2624 -3.3069 0.0633 51 1 2.0325 -4.3022 0.8918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256114290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:56 Heat of formation + Delta-G solvation = 5.725715 kcal Electronic energy + Delta-G solvation = -27794.345589 eV Core-core repulsion = 24463.963300 eV Total energy + Delta-G solvation = -3330.382288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.71846 -38.29566 -36.70561 -33.05068 -31.99857 -31.47176 -30.80259 -28.76886 -28.07196 -27.48152 -25.96515 -23.66625 -23.09246 -22.39673 -21.46711 -20.41624 -19.65279 -18.75663 -17.90885 -16.79166 -15.85044 -15.34537 -15.08028 -14.69741 -14.58908 -14.11144 -13.94658 -13.70020 -13.40719 -13.36436 -13.11190 -12.82365 -12.37698 -12.31444 -11.85691 -11.79115 -11.56317 -11.41907 -11.16821 -11.11618 -11.03819 -10.71984 -10.59842 -10.36982 -10.31752 -10.18052 -10.01542 -9.86190 -9.71751 -9.62883 -9.42855 -9.19529 -9.15251 -8.82706 -8.69803 -8.46025 -8.15067 -6.62504 -5.74550 -3.89003 1.48623 1.49385 3.33769 3.43832 3.47317 3.90024 4.53114 4.90063 4.96232 5.05613 5.20907 5.29921 5.39606 5.49201 5.58948 5.60123 5.66941 5.75768 5.78498 5.83007 5.93289 6.00808 6.07708 6.16332 6.19756 6.21806 6.28844 6.35829 6.43931 6.46866 6.51473 6.56262 6.57993 6.60801 6.67279 6.72824 6.75919 6.80853 6.84419 6.91337 6.95730 7.04362 7.12755 7.19159 7.25691 7.33647 7.42339 7.54822 7.64583 7.88580 7.98535 8.39352 8.79220 9.00781 9.31399 9.76731 11.24329 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.004528 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.013221 B = 6181.730259 C = 7261.640724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.091 3.909 3 Si 0.861 3.139 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.247 3.753 10 N -0.633 5.633 11 C 0.112 3.888 12 H 0.052 0.948 13 C -0.094 4.094 14 C -0.104 4.104 15 C -0.102 4.102 16 C -0.043 4.043 17 H 0.085 0.915 18 C -0.063 4.063 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.087 4.087 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.150 4.150 29 H 0.250 0.750 30 H 0.297 0.703 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.032 0.968 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.052 0.948 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -9.756 8.144 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.115 4.115 3 Si 0.689 3.311 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.157 3.843 10 N -0.262 5.262 11 C 0.002 3.998 12 H 0.070 0.930 13 C -0.132 4.132 14 C -0.142 4.142 15 C -0.139 4.139 16 C -0.062 4.062 17 H 0.103 0.897 18 C -0.063 4.063 19 C -0.134 4.134 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.160 4.160 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.158 4.158 28 C -0.190 4.190 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.758 -8.949 8.196 12.704 hybrid contribution 1.003 -0.012 0.169 1.018 sum -2.755 -8.962 8.366 12.565 Atomic orbital electron populations 1.70137 1.04988 1.24942 1.46589 1.24783 0.94469 0.97477 0.94735 0.87079 0.80636 0.85923 0.77454 1.20208 1.21382 1.21211 1.20913 0.91614 0.89723 1.53059 0.93439 1.19161 0.86845 0.91093 0.87175 1.60839 1.25348 1.39774 1.00252 1.21091 0.96915 0.92321 0.89500 0.92974 1.21452 0.94662 0.99690 0.97430 1.21341 0.98167 0.94710 0.99978 1.21550 0.99568 0.94527 0.98294 1.20163 0.96931 0.91754 0.97314 0.89674 1.20199 0.95168 0.96100 0.94804 1.21043 1.00109 0.98259 0.93988 1.21102 0.98078 0.95368 0.99490 1.21049 0.98297 0.99486 0.96500 1.21105 1.00080 0.98335 0.94413 1.21150 0.97928 0.94857 0.99841 1.22096 0.94445 0.99256 1.00187 1.22196 0.95084 0.98976 0.96307 1.22483 0.99305 0.97282 0.97017 1.22267 0.98727 0.97469 0.97297 1.23124 1.02096 0.98641 0.95098 0.93984 0.88589 0.89788 0.95761 0.89012 0.94589 0.93356 0.93318 0.86256 0.86591 0.86703 0.86517 0.86098 0.93152 0.92742 0.94932 0.90533 0.92200 0.94003 0.93842 0.93439 0.92910 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.24 11.35 55.43 0.63 -20.61 16 2 C 0.09 2.30 3.19 -17.82 -0.06 2.24 16 3 Si 0.86 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -12.80 6.65 -34.44 -0.23 -13.03 16 8 H 0.05 1.24 7.33 -52.49 -0.38 0.86 16 9 C 0.25 5.41 0.38 -131.64 -0.05 5.36 16 10 N -0.63 -13.03 4.06 -93.08 -0.38 -13.40 16 11 C 0.11 2.16 1.59 -67.71 -0.11 2.05 16 12 H 0.05 1.12 6.31 -51.93 -0.33 0.79 16 13 C -0.09 -1.88 5.59 -26.73 -0.15 -2.03 16 14 C -0.10 -1.93 5.77 -26.73 -0.15 -2.08 16 15 C -0.10 -1.59 5.02 -26.73 -0.13 -1.73 16 16 C -0.04 -0.65 2.18 -91.77 -0.20 -0.85 16 17 H 0.09 1.39 6.53 -51.93 -0.34 1.05 16 18 C -0.06 -0.87 4.78 -104.62 -0.50 -1.37 16 19 C -0.12 -1.51 8.71 -39.58 -0.34 -1.86 16 20 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 21 C -0.14 -1.51 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 23 C -0.12 -1.56 9.67 -39.59 -0.38 -1.94 16 24 C -0.12 -1.96 4.37 -26.73 -0.12 -2.08 16 25 C -0.09 -1.90 5.65 -25.03 -0.14 -2.04 16 26 C -0.12 -2.34 6.91 -24.70 -0.17 -2.51 16 27 C -0.12 -2.15 6.83 -25.07 -0.17 -2.32 16 28 C -0.15 -2.99 5.18 -25.61 -0.13 -3.12 16 29 H 0.25 6.35 8.32 -40.82 -0.34 6.01 16 30 H 0.30 5.86 6.71 -39.29 -0.26 5.60 16 31 H 0.08 1.97 5.74 -51.93 -0.30 1.67 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.94 7.60 -51.93 -0.39 1.54 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.72 7.41 -51.92 -0.38 0.34 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.12 1.49 7.10 -52.49 -0.37 1.11 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.47 7.95 -52.48 -0.42 1.05 16 42 H 0.05 0.82 7.71 -51.93 -0.40 0.42 16 43 H 0.05 0.84 7.37 -51.93 -0.38 0.46 16 44 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 45 H 0.08 1.89 6.72 -51.93 -0.35 1.54 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.05 1.11 7.37 -51.93 -0.38 0.73 16 51 H 0.04 0.73 6.76 -51.93 -0.35 0.38 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -24.82 374.86 -12.18 -36.99 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.82 Total: 8.99 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -4.23 Total: -32.83 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.25 Total: -34.01 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -24.82 -12.18 -36.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256114290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.720 kcal (2) G-P(sol) polarization free energy of solvation -24.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds