Wall clock time and date at job start Tue Mar 31 2020 10:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99510 * 2 1 4 4 H 1.48502 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47452 * 300.00187 * 3 2 1 6 6 H 1.48502 * 109.47172 * 60.00253 * 3 2 1 7 7 C 1.37878 * 120.00552 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00171 * 181.11057 * 7 2 1 9 9 C 1.50701 * 119.99474 * 1.11238 * 7 2 1 10 10 N 1.46897 * 110.01651 * 303.12351 * 9 7 2 11 11 C 1.46897 * 111.00308 * 300.57294 * 10 9 7 12 12 H 1.09000 * 109.47264 * 350.67494 * 11 10 9 13 13 C 1.52999 * 109.47374 * 110.67867 * 11 10 9 14 14 C 1.52999 * 109.47241 * 60.00278 * 13 11 10 15 15 C 1.53000 * 109.47274 * 59.99576 * 14 13 11 16 16 C 1.52999 * 109.47332 * 300.00368 * 15 14 13 17 17 H 1.08999 * 109.47217 * 299.99701 * 16 15 14 18 18 C 1.50706 * 109.47028 * 179.97438 * 16 15 14 19 19 C 1.38240 * 120.00063 * 299.73032 * 18 16 15 20 20 C 1.38227 * 119.99717 * 179.78778 * 19 18 16 21 21 C 1.38232 * 120.00157 * 0.46422 * 20 19 18 22 22 C 1.38237 * 120.00117 * 359.76075 * 21 20 19 23 23 C 1.38230 * 119.99665 * 0.03338 * 22 21 20 24 24 C 1.53002 * 109.47168 * 230.68074 * 11 10 9 25 25 C 1.54262 * 110.03556 * 64.51769 * 9 7 2 26 26 C 1.54970 * 104.16029 * 95.75266 * 25 9 7 27 27 C 1.54888 * 102.77438 * 37.88954 * 26 25 9 28 28 C 1.53878 * 110.03114 * 181.73742 * 9 7 2 29 29 H 0.97000 * 120.00692 * 5.01843 * 1 2 3 30 30 H 1.00900 * 111.00027 * 176.61559 * 10 9 7 31 31 H 1.08994 * 109.47034 * 300.00168 * 13 11 10 32 32 H 1.09000 * 109.46960 * 179.97438 * 13 11 10 33 33 H 1.08999 * 109.46943 * 300.00079 * 14 13 11 34 34 H 1.09000 * 109.47337 * 180.02562 * 14 13 11 35 35 H 1.09009 * 109.46653 * 60.00382 * 15 14 13 36 36 H 1.09000 * 109.47380 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.99891 * 359.97438 * 19 18 16 38 38 H 1.08003 * 120.00182 * 180.24705 * 20 19 18 39 39 H 1.08004 * 120.00023 * 179.79293 * 21 20 19 40 40 H 1.07997 * 120.00266 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.00158 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47252 * 59.99485 * 24 11 10 43 43 H 1.09000 * 109.47612 * 179.97438 * 24 11 10 44 44 H 1.08999 * 110.48973 * 214.39976 * 25 9 7 45 45 H 1.09000 * 110.48459 * 337.04613 * 25 9 7 46 46 H 1.09003 * 110.71934 * 279.57560 * 26 25 9 47 47 H 1.08996 * 110.92355 * 156.29693 * 26 25 9 48 48 H 1.09005 * 110.48459 * 203.40955 * 27 26 25 49 49 H 1.08994 * 110.60164 * 80.82332 * 27 26 25 50 50 H 1.09001 * 110.03152 * 359.94614 * 28 9 7 51 51 H 1.08994 * 110.03328 * 121.32973 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0176 9 6 1.2513 -2.4990 -0.0265 10 7 0.3275 -2.5690 1.1135 11 6 1.0530 -2.4643 2.3864 12 1 2.1252 -2.5246 2.1996 13 6 0.7256 -1.1260 3.0516 14 6 -0.7793 -1.0416 3.3141 15 6 -1.2011 -2.1866 4.2371 16 6 -0.8737 -3.5249 3.5719 17 1 -1.4121 -3.6026 2.6273 18 6 -1.2887 -4.6527 4.4813 19 6 -0.7307 -4.7658 5.7410 20 6 -1.1146 -5.7978 6.5768 21 6 -2.0493 -6.7221 6.1493 22 6 -2.6038 -6.6117 4.8879 23 6 -2.2231 -5.5773 4.0537 24 6 0.6313 -3.6094 3.3095 25 6 0.4692 -2.6315 -1.3495 26 6 1.4042 -3.4666 -2.2606 27 6 2.0219 -4.4878 -1.2733 28 6 2.2385 -3.6784 0.0220 29 1 -0.4851 0.8368 -0.0735 30 1 -0.2246 -3.4129 1.0802 31 1 1.0261 -0.3103 2.3941 32 1 1.2637 -1.0486 3.9964 33 1 -1.3177 -1.1192 2.3696 34 1 -1.0126 -0.0879 3.7876 35 1 -0.6627 -2.1090 5.1817 36 1 -2.2732 -2.1262 4.4244 37 1 0.0029 -4.0462 6.0733 38 1 -0.6816 -5.8839 7.5625 39 1 -2.3467 -7.5303 6.8011 40 1 -3.3344 -7.3336 4.5540 41 1 -2.6560 -5.4912 3.0680 42 1 0.8645 -4.5629 2.8356 43 1 1.1700 -3.5321 4.2539 44 1 -0.4718 -3.1566 -1.1854 45 1 0.2881 -1.6492 -1.7856 46 1 2.1782 -2.8368 -2.6995 47 1 0.8360 -3.9764 -3.0385 48 1 2.9731 -4.8594 -1.6544 49 1 1.3339 -5.3143 -1.0962 50 1 3.2624 -3.3069 0.0633 51 1 2.0325 -4.3022 0.8918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256114290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:55 Heat of formation + Delta-G solvation = -2.756392 kcal Electronic energy + Delta-G solvation = -27794.713400 eV Core-core repulsion = 24463.963300 eV Total energy + Delta-G solvation = -3330.750100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91643 -39.67037 -38.12952 -34.58609 -33.73047 -32.86186 -31.69865 -30.26501 -29.31899 -29.11508 -27.75754 -25.42138 -24.21734 -23.37479 -22.91249 -21.67839 -21.11559 -20.44843 -19.47177 -17.83479 -17.58688 -16.67420 -16.57835 -16.17881 -15.90979 -15.68444 -15.30627 -15.10629 -14.81474 -14.57097 -14.15532 -14.03333 -14.00826 -13.81431 -13.33275 -13.17442 -13.11169 -12.96007 -12.81179 -12.58819 -12.41353 -12.17915 -12.12049 -11.97390 -11.76460 -11.63249 -11.55552 -11.47662 -11.33560 -11.16029 -11.08114 -10.75242 -10.71043 -10.52373 -10.07526 -9.72901 -9.45686 -8.28883 -7.71562 -5.89571 0.56065 0.59071 1.39070 1.46894 1.51138 2.56050 2.97776 3.42620 3.79782 3.88757 3.99073 4.13429 4.21042 4.24307 4.25572 4.27009 4.36031 4.41264 4.50763 4.59779 4.66812 4.71894 4.78359 4.83223 4.87921 4.90937 4.92237 4.99923 5.06181 5.10407 5.13034 5.17437 5.22443 5.24875 5.28268 5.31387 5.32504 5.39713 5.46325 5.60102 5.60919 5.68386 5.70404 5.71720 5.75090 5.86795 5.91582 5.94980 5.99651 6.13141 6.22847 6.53050 6.94608 7.23987 7.58176 7.77744 9.23670 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.004528 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.013221 B = 6181.730259 C = 7261.640724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.521 4.521 8 H 0.027 0.973 9 C 0.241 3.759 10 N -0.638 5.638 11 C 0.117 3.883 12 H 0.027 0.973 13 C -0.093 4.093 14 C -0.095 4.095 15 C -0.093 4.093 16 C -0.032 4.032 17 H 0.071 0.929 18 C -0.078 4.078 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.085 4.085 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.145 4.145 29 H 0.245 0.755 30 H 0.303 0.697 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.041 0.959 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.035 0.965 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 -12.230 9.546 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.560 4.560 8 H 0.045 0.955 9 C 0.152 3.848 10 N -0.268 5.268 11 C 0.007 3.993 12 H 0.045 0.955 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.130 4.130 16 C -0.050 4.050 17 H 0.089 0.911 18 C -0.078 4.078 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.149 4.149 28 C -0.185 4.185 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.350 -11.422 9.595 15.539 hybrid contribution 1.196 0.768 -0.235 1.441 sum -3.153 -10.654 9.360 14.528 Atomic orbital electron populations 1.70209 1.05398 1.24754 1.47307 1.25064 0.94880 0.98838 0.94850 0.86506 0.79607 0.84205 0.77002 1.20724 1.21479 1.21555 1.21033 0.90782 0.91428 1.52774 0.95502 1.19122 0.87345 0.90602 0.87752 1.60666 1.25450 1.40201 1.00434 1.20984 0.95270 0.93336 0.89699 0.95482 1.21389 0.95881 0.98730 0.97169 1.21180 0.96628 0.96122 0.99290 1.21450 1.00089 0.93536 0.97928 1.19956 0.95722 0.92253 0.97096 0.91101 1.20042 0.96498 0.96151 0.95122 1.21160 1.00413 0.99053 0.93922 1.21410 0.97949 0.94765 1.00247 1.21429 0.97440 0.99797 0.96582 1.21403 1.00264 0.98149 0.94457 1.21294 0.98094 0.95368 1.00417 1.21933 0.95467 0.97612 0.99686 1.22074 0.95858 0.97678 0.96714 1.22426 0.98621 0.97150 0.97356 1.22223 1.00032 0.97205 0.95421 1.22996 1.00344 0.98257 0.96879 0.94514 0.87936 0.93666 0.94476 0.91898 0.94667 0.92152 0.92592 0.86046 0.84369 0.84042 0.84360 0.85956 0.92997 0.91701 0.94777 0.94029 0.93330 0.91558 0.92054 0.91565 0.94649 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.44 11.35 21.45 0.24 -44.20 16 2 C 0.07 3.56 3.19 84.66 0.27 3.83 16 3 Si 0.90 42.81 29.54 68.60 2.03 44.84 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.52 -26.84 6.65 25.60 0.17 -26.67 16 8 H 0.03 1.46 7.33 -2.91 -0.02 1.44 16 9 C 0.24 10.77 0.38 3.51 0.00 10.77 16 10 N -0.64 -26.70 4.06 -448.41 -1.82 -28.52 16 11 C 0.12 4.58 1.59 44.92 0.07 4.65 16 12 H 0.03 1.19 6.31 -2.39 -0.02 1.17 16 13 C -0.09 -3.80 5.59 30.59 0.17 -3.62 16 14 C -0.09 -3.52 5.77 30.59 0.18 -3.35 16 15 C -0.09 -2.80 5.02 30.59 0.15 -2.65 16 16 C -0.03 -0.93 2.18 -11.54 -0.03 -0.96 16 17 H 0.07 2.28 6.53 -2.39 -0.02 2.27 16 18 C -0.08 -2.03 4.78 -19.86 -0.09 -2.13 16 19 C -0.13 -3.02 8.71 22.27 0.19 -2.82 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 23 C -0.13 -3.23 9.67 22.27 0.22 -3.01 16 24 C -0.11 -3.42 4.37 30.60 0.13 -3.29 16 25 C -0.08 -3.71 5.65 31.70 0.18 -3.53 16 26 C -0.12 -4.33 6.91 31.91 0.22 -4.11 16 27 C -0.11 -3.75 6.83 31.67 0.22 -3.54 16 28 C -0.14 -5.73 5.18 31.32 0.16 -5.57 16 29 H 0.24 12.87 8.32 -92.71 -0.77 12.10 16 30 H 0.30 11.98 6.71 -89.69 -0.60 11.38 16 31 H 0.04 2.19 5.74 -2.39 -0.01 2.18 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.06 2.72 7.60 -2.39 -0.02 2.70 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.69 7.41 -2.38 -0.02 1.68 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 2.75 7.10 -2.91 -0.02 2.72 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.12 2.81 7.95 -2.91 -0.02 2.79 16 42 H 0.05 1.62 7.71 -2.39 -0.02 1.60 16 43 H 0.06 1.91 7.37 -2.39 -0.02 1.89 16 44 H 0.03 1.45 7.91 -2.39 -0.02 1.43 16 45 H 0.04 2.10 6.72 -2.39 -0.02 2.08 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 48 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 49 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.03 1.49 7.37 -2.39 -0.02 1.47 16 51 H 0.05 1.73 6.76 -2.39 -0.02 1.72 16 Total: -1.00 -54.74 374.86 3.63 -51.12 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.29 Total: 29.64 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 2.89 Total: -52.87 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.58 Total: -72.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -54.74 3.63 -51.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256114290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.360 kcal (2) G-P(sol) polarization free energy of solvation -54.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds