Wall clock time and date at job start Tue Mar 31 2020 10:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47074 * 300.00489 * 3 2 1 6 6 H 1.48499 * 109.47131 * 60.00293 * 3 2 1 7 7 C 1.37876 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50800 * 60.07296 * 9 7 2 11 11 C 1.53124 * 109.50147 * 300.00125 * 9 7 2 12 12 C 1.53114 * 109.16420 * 182.36486 * 11 9 7 13 13 C 1.53037 * 109.27715 * 57.64755 * 12 11 9 14 14 N 1.46837 * 109.52934 * 300.82250 * 13 12 11 15 15 C 1.46897 * 111.00645 * 185.83536 * 14 13 12 16 16 H 1.08996 * 109.47600 * 296.05217 * 15 14 13 17 17 C 1.52996 * 109.47593 * 176.04621 * 15 14 13 18 18 C 1.52997 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47592 * 60.00300 * 18 17 15 20 20 C 1.53006 * 109.46626 * 300.00035 * 19 18 17 21 21 H 1.09000 * 109.47050 * 299.99699 * 20 19 18 22 22 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 23 23 C 1.38238 * 120.00214 * 299.72675 * 22 20 19 24 24 C 1.38236 * 120.00160 * 179.74445 * 23 22 20 25 25 C 1.38231 * 119.99530 * 0.52801 * 24 23 22 26 26 C 1.38237 * 120.00368 * 359.74616 * 25 24 23 27 27 C 1.38231 * 119.99898 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.47164 * 59.99702 * 20 19 18 29 29 C 1.46851 * 111.19477 * 61.74322 * 14 13 12 30 30 H 0.96995 * 120.00346 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.52254 * 62.45558 * 11 9 7 32 32 H 1.09005 * 109.52027 * 302.26656 * 11 9 7 33 33 H 1.09001 * 109.50653 * 297.71423 * 12 11 9 34 34 H 1.08999 * 109.50667 * 177.59328 * 12 11 9 35 35 H 1.09003 * 109.46645 * 180.80463 * 13 12 11 36 36 H 1.09003 * 109.45949 * 60.84211 * 13 12 11 37 37 H 1.09000 * 109.47054 * 300.00396 * 17 15 14 38 38 H 1.09001 * 109.46997 * 60.00129 * 17 15 14 39 39 H 1.09000 * 109.47140 * 299.99954 * 18 17 15 40 40 H 1.09002 * 109.47045 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47839 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.47160 * 59.99666 * 19 18 17 43 43 H 1.08003 * 119.99587 * 0.02562 * 23 22 20 44 44 H 1.07998 * 119.99945 * 180.29569 * 24 23 22 45 45 H 1.08006 * 119.99481 * 179.76849 * 25 24 23 46 46 H 1.07999 * 119.99979 * 179.97438 * 26 25 24 47 47 H 1.07993 * 120.00014 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47140 * 60.00051 * 28 20 19 49 49 H 1.09001 * 109.47230 * 179.97438 * 28 20 19 50 50 H 1.08992 * 109.46565 * 58.27514 * 29 14 13 51 51 H 1.09007 * 109.45971 * 178.24495 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.6256 -2.5576 -0.8924 11 6 0.3701 -2.5819 1.2479 12 6 -0.3463 -3.9349 1.2691 13 6 0.6932 -5.0576 1.2362 14 7 1.5099 -4.9350 0.0221 15 6 2.4269 -6.0746 -0.1131 16 1 3.1350 -6.0715 0.7155 17 6 3.1885 -5.9625 -1.4352 18 6 4.1431 -7.1498 -1.5762 19 6 3.3421 -8.4532 -1.5581 20 6 2.5804 -8.5654 -0.2359 21 1 3.2886 -8.5626 0.5927 22 6 1.7910 -9.8489 -0.2183 23 6 0.8217 -10.0774 -1.1771 24 6 0.1012 -11.2571 -1.1641 25 6 0.3424 -12.2035 -0.1858 26 6 1.3078 -11.9725 0.7764 27 6 2.0322 -10.7954 0.7599 28 6 1.6259 -7.3780 -0.0949 29 6 2.2444 -3.6635 0.0024 30 1 -0.4850 0.8400 0.0004 31 1 -0.3673 -1.7795 1.2274 32 1 0.9911 -2.4846 2.1385 33 1 -0.9969 -4.0160 0.3983 34 1 -0.9421 -4.0171 2.1781 35 1 0.1861 -6.0224 1.2368 36 1 1.3348 -4.9843 2.1144 37 1 2.4804 -5.9656 -2.2639 38 1 3.7589 -5.0337 -1.4483 39 1 4.8513 -7.1470 -0.7476 40 1 4.6861 -7.0696 -2.5180 41 1 4.0222 -9.2991 -1.6581 42 1 2.6339 -8.4560 -2.3867 43 1 0.6306 -9.3362 -1.9390 44 1 -0.6527 -11.4377 -1.9160 45 1 -0.2231 -13.1235 -0.1734 46 1 1.4959 -12.7117 1.5409 47 1 2.7861 -10.6147 1.5118 48 1 0.9177 -7.3808 -0.9235 49 1 1.0829 -7.4581 0.8468 50 1 2.8786 -3.5967 0.8863 51 1 2.8637 -3.6156 -0.8933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256117079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:48 Heat of formation + Delta-G solvation = -1.317771 kcal Electronic energy + Delta-G solvation = -26569.800342 eV Core-core repulsion = 23239.112626 eV Total energy + Delta-G solvation = -3330.687717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.10666 -38.74855 -36.88292 -33.69806 -32.64042 -31.52523 -31.03668 -30.09391 -28.87650 -28.18423 -25.00933 -23.63660 -23.20746 -22.73690 -21.87904 -20.72621 -20.32548 -19.39368 -18.54022 -17.07527 -16.37825 -15.76305 -15.35780 -14.93563 -14.57438 -14.52764 -14.15863 -14.02785 -13.75630 -13.54487 -13.34733 -13.09582 -12.91293 -12.54565 -12.52969 -12.40658 -12.18727 -11.83636 -11.47686 -11.42309 -11.28743 -11.13965 -10.94391 -10.87923 -10.70275 -10.60722 -10.44471 -10.19249 -10.11806 -9.80568 -9.75136 -9.36743 -9.04838 -8.96807 -8.75846 -8.62649 -8.26981 -7.57296 -5.94502 -4.00462 1.23654 1.27191 3.31217 3.39296 3.42899 3.65356 4.33085 4.48419 4.54886 4.67547 4.85174 4.86706 4.98490 5.02306 5.21686 5.24216 5.35324 5.36611 5.41261 5.49081 5.54362 5.55826 5.60177 5.70690 5.79622 5.87484 5.88757 5.89782 5.98121 6.10991 6.13547 6.17295 6.23918 6.28429 6.34267 6.36968 6.38657 6.43715 6.47186 6.54532 6.59565 6.65098 6.78623 6.82313 6.88395 7.05132 7.27343 7.46523 7.74996 7.79756 7.91794 8.13400 8.22087 8.52539 9.04053 9.63689 11.11406 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.002840 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.357499 B = 9855.393752 C =10484.593561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.087 3.913 16 H 0.030 0.970 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.048 4.048 21 H 0.074 0.926 22 C -0.068 4.068 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.102 4.102 29 C 0.066 3.934 30 H 0.258 0.742 31 H 0.090 0.910 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.015 0.985 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -22.390 -0.582 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.021 4.021 16 H 0.048 0.952 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.067 4.067 21 H 0.093 0.907 22 C -0.068 4.068 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.140 4.140 29 C -0.061 4.061 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.034 0.966 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.736 -22.254 -0.980 22.443 hybrid contribution 0.965 0.906 0.849 1.573 sum 3.701 -21.348 -0.131 21.667 Atomic orbital electron populations 1.69903 1.05816 1.26131 1.50881 1.24935 0.94815 0.98911 0.95224 0.86592 0.80137 0.84068 0.77516 1.19889 1.21064 1.21133 1.21195 0.92820 0.90728 1.50387 0.92881 1.18657 0.92624 0.90308 0.94774 0.94854 1.21650 1.00008 0.94744 0.98460 1.21670 0.97207 0.96546 1.00051 1.22080 0.95653 0.98801 0.90231 1.62024 1.23918 1.02055 1.37789 1.21527 0.93150 0.90852 0.96594 0.95183 1.21636 0.98038 0.97812 0.97709 1.21531 0.97877 0.94487 1.01602 1.21587 0.98757 0.97480 0.96680 1.20207 0.96306 0.91394 0.98770 0.90724 1.19936 0.96350 0.95631 0.94912 1.21068 0.95844 0.97242 0.98849 1.21154 0.99669 0.94166 0.98737 1.21112 0.98610 0.99418 0.95633 1.21111 0.96561 0.97358 0.98858 1.21085 1.00129 0.93990 0.98570 1.21701 0.97523 0.92182 1.02601 1.22349 0.96478 0.88525 0.98726 0.93165 0.89185 0.95306 0.92162 0.93718 0.92052 0.96219 0.91116 0.91376 0.92279 0.91852 0.92282 0.91651 0.85912 0.86235 0.86439 0.86364 0.86301 0.90928 0.91823 0.96629 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.35 55.43 0.63 -24.89 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.13 8.57 -34.44 -0.30 -14.42 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.08 5.14 -3.84 -0.02 1.06 16 14 N -0.53 -9.80 4.52 -226.70 -1.03 -10.83 16 15 C 0.09 1.31 1.95 -67.71 -0.13 1.17 16 16 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 17 C -0.11 -1.57 4.97 -26.73 -0.13 -1.70 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.11 -1.09 5.02 -26.73 -0.13 -1.23 16 20 C -0.05 -0.51 2.36 -91.77 -0.22 -0.73 16 21 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 22 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 23 C -0.11 -1.16 8.71 -39.58 -0.34 -1.51 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.19 9.67 -39.59 -0.38 -1.57 16 28 C -0.10 -1.31 3.94 -26.73 -0.11 -1.42 16 29 C 0.07 1.41 4.44 -3.83 -0.02 1.39 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.09 2.41 6.15 -51.93 -0.32 2.10 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.98 5.91 -51.93 -0.31 0.67 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.02 6.27 -51.93 -0.33 0.70 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.67 7.40 -51.93 -0.38 0.28 16 43 H 0.12 1.21 7.10 -52.48 -0.37 0.84 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 48 H 0.07 0.97 7.37 -51.93 -0.38 0.59 16 49 H 0.06 0.85 6.22 -51.93 -0.32 0.53 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 1.32 6.00 -51.93 -0.31 1.01 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -28.52 379.07 -12.95 -41.47 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.01 Total: 0.85 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -4.23 Total: -28.68 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.40 Total: -35.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.52 -12.95 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256117079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.151 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds