Wall clock time and date at job start Tue Mar 31 2020 10:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47074 * 300.00489 * 3 2 1 6 6 H 1.48499 * 109.47131 * 60.00293 * 3 2 1 7 7 C 1.37876 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50800 * 60.07296 * 9 7 2 11 11 C 1.53124 * 109.50147 * 300.00125 * 9 7 2 12 12 C 1.53114 * 109.16420 * 182.36486 * 11 9 7 13 13 C 1.53037 * 109.27715 * 57.64755 * 12 11 9 14 14 N 1.46837 * 109.52934 * 300.82250 * 13 12 11 15 15 C 1.46897 * 111.00645 * 185.83536 * 14 13 12 16 16 H 1.08996 * 109.47600 * 296.05217 * 15 14 13 17 17 C 1.52996 * 109.47593 * 176.04621 * 15 14 13 18 18 C 1.52997 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47592 * 60.00300 * 18 17 15 20 20 C 1.53006 * 109.46626 * 300.00035 * 19 18 17 21 21 H 1.09000 * 109.47050 * 299.99699 * 20 19 18 22 22 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 23 23 C 1.38238 * 120.00214 * 299.72675 * 22 20 19 24 24 C 1.38236 * 120.00160 * 179.74445 * 23 22 20 25 25 C 1.38231 * 119.99530 * 0.52801 * 24 23 22 26 26 C 1.38237 * 120.00368 * 359.74616 * 25 24 23 27 27 C 1.38231 * 119.99898 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.47164 * 59.99702 * 20 19 18 29 29 C 1.46851 * 111.19477 * 61.74322 * 14 13 12 30 30 H 0.96995 * 120.00346 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.52254 * 62.45558 * 11 9 7 32 32 H 1.09005 * 109.52027 * 302.26656 * 11 9 7 33 33 H 1.09001 * 109.50653 * 297.71423 * 12 11 9 34 34 H 1.08999 * 109.50667 * 177.59328 * 12 11 9 35 35 H 1.09003 * 109.46645 * 180.80463 * 13 12 11 36 36 H 1.09003 * 109.45949 * 60.84211 * 13 12 11 37 37 H 1.09000 * 109.47054 * 300.00396 * 17 15 14 38 38 H 1.09001 * 109.46997 * 60.00129 * 17 15 14 39 39 H 1.09000 * 109.47140 * 299.99954 * 18 17 15 40 40 H 1.09002 * 109.47045 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47839 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.47160 * 59.99666 * 19 18 17 43 43 H 1.08003 * 119.99587 * 0.02562 * 23 22 20 44 44 H 1.07998 * 119.99945 * 180.29569 * 24 23 22 45 45 H 1.08006 * 119.99481 * 179.76849 * 25 24 23 46 46 H 1.07999 * 119.99979 * 179.97438 * 26 25 24 47 47 H 1.07993 * 120.00014 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47140 * 60.00051 * 28 20 19 49 49 H 1.09001 * 109.47230 * 179.97438 * 28 20 19 50 50 H 1.08992 * 109.46565 * 58.27514 * 29 14 13 51 51 H 1.09007 * 109.45971 * 178.24495 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.6256 -2.5576 -0.8924 11 6 0.3701 -2.5819 1.2479 12 6 -0.3463 -3.9349 1.2691 13 6 0.6932 -5.0576 1.2362 14 7 1.5099 -4.9350 0.0221 15 6 2.4269 -6.0746 -0.1131 16 1 3.1350 -6.0715 0.7155 17 6 3.1885 -5.9625 -1.4352 18 6 4.1431 -7.1498 -1.5762 19 6 3.3421 -8.4532 -1.5581 20 6 2.5804 -8.5654 -0.2359 21 1 3.2886 -8.5626 0.5927 22 6 1.7910 -9.8489 -0.2183 23 6 0.8217 -10.0774 -1.1771 24 6 0.1012 -11.2571 -1.1641 25 6 0.3424 -12.2035 -0.1858 26 6 1.3078 -11.9725 0.7764 27 6 2.0322 -10.7954 0.7599 28 6 1.6259 -7.3780 -0.0949 29 6 2.2444 -3.6635 0.0024 30 1 -0.4850 0.8400 0.0004 31 1 -0.3673 -1.7795 1.2274 32 1 0.9911 -2.4846 2.1385 33 1 -0.9969 -4.0160 0.3983 34 1 -0.9421 -4.0171 2.1781 35 1 0.1861 -6.0224 1.2368 36 1 1.3348 -4.9843 2.1144 37 1 2.4804 -5.9656 -2.2639 38 1 3.7589 -5.0337 -1.4483 39 1 4.8513 -7.1470 -0.7476 40 1 4.6861 -7.0696 -2.5180 41 1 4.0222 -9.2991 -1.6581 42 1 2.6339 -8.4560 -2.3867 43 1 0.6306 -9.3362 -1.9390 44 1 -0.6527 -11.4377 -1.9160 45 1 -0.2231 -13.1235 -0.1734 46 1 1.4959 -12.7117 1.5409 47 1 2.7861 -10.6147 1.5118 48 1 0.9177 -7.3808 -0.9235 49 1 1.0829 -7.4581 0.8468 50 1 2.8786 -3.5967 0.8863 51 1 2.8637 -3.6156 -0.8933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256117079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:47 Heat of formation + Delta-G solvation = -13.597658 kcal Electronic energy + Delta-G solvation = -26570.332838 eV Core-core repulsion = 23239.112626 eV Total energy + Delta-G solvation = -3331.220213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08445 -39.89778 -38.14266 -35.41783 -33.89600 -32.93724 -31.79518 -31.70428 -30.09088 -29.25503 -26.94883 -24.94182 -24.43454 -23.55029 -23.07083 -22.18008 -21.35577 -20.48654 -20.25440 -18.46978 -17.73867 -17.08684 -16.52112 -16.11674 -15.84837 -15.68551 -15.51702 -15.24478 -14.93024 -14.64985 -14.44792 -14.28177 -14.18182 -14.06040 -13.82084 -13.78341 -13.46466 -13.03813 -12.88527 -12.80594 -12.61308 -12.43756 -12.29642 -12.18371 -12.10664 -11.78659 -11.74998 -11.71207 -11.45355 -11.33400 -11.15857 -10.94946 -10.76877 -10.55200 -10.35009 -9.74878 -9.51217 -9.09076 -8.07959 -6.22120 0.52313 0.57092 1.39348 1.40923 1.52330 2.42289 2.91282 3.08009 3.18747 3.62976 3.77957 3.98358 4.10707 4.15777 4.21715 4.27110 4.29907 4.31051 4.35742 4.42102 4.48003 4.53568 4.58612 4.61456 4.63022 4.70443 4.72346 4.76299 4.81393 4.89420 4.96012 5.06359 5.09176 5.13003 5.16249 5.24274 5.25343 5.27463 5.29642 5.34911 5.36053 5.43316 5.51746 5.56282 5.63735 5.66128 5.69820 5.84271 5.98182 6.14210 6.19756 6.23128 6.44236 6.48094 6.90934 7.45689 8.96814 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.002840 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.357499 B = 9855.393752 C =10484.593561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.054 3.946 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.065 3.935 14 N -0.542 5.542 15 C 0.088 3.912 16 H 0.029 0.971 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.039 4.039 21 H 0.079 0.921 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.092 4.092 29 C 0.082 3.918 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.008 0.992 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -24.513 -0.177 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.063 4.063 14 N -0.267 5.267 15 C -0.020 4.020 16 H 0.047 0.953 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.058 4.058 21 H 0.097 0.903 22 C -0.080 4.080 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.130 4.130 29 C -0.045 4.045 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.026 0.974 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.546 -24.394 -0.578 24.658 hybrid contribution 0.669 1.533 0.708 1.816 sum 4.215 -22.862 0.130 23.247 Atomic orbital electron populations 1.70044 1.07163 1.26969 1.51337 1.25724 0.95667 1.02319 0.94828 0.85572 0.79074 0.79786 0.77618 1.19186 1.20567 1.20608 1.21545 0.92911 0.92220 1.50607 0.93191 1.18575 0.92968 0.91354 0.93603 0.98600 1.21463 0.99095 0.96272 0.97378 1.21583 0.97542 0.94917 1.00756 1.22065 0.95132 0.99092 0.90011 1.61982 1.24559 1.01905 1.38208 1.21636 0.92904 0.90387 0.97080 0.95318 1.21608 0.98139 0.98526 0.96728 1.21483 0.97330 0.93455 1.02492 1.21551 0.98779 0.97340 0.96341 1.20106 0.95876 0.90613 0.99239 0.90264 1.19932 0.96799 0.95723 0.95571 1.21181 0.96330 0.97805 0.99075 1.21411 0.99892 0.93988 0.99350 1.21436 0.98559 1.00044 0.95179 1.21419 0.96201 0.97512 0.99303 1.21303 1.00620 0.94223 0.98643 1.21596 0.97534 0.91780 1.02105 1.21992 0.95322 0.88927 0.98287 0.93086 0.92390 0.96145 0.93129 0.91437 0.89299 0.96128 0.92003 0.93084 0.91737 0.90662 0.90927 0.91778 0.86075 0.84795 0.84382 0.84357 0.85227 0.91602 0.92118 0.97420 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 11.35 21.45 0.24 -53.88 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.53 -30.32 8.57 25.60 0.22 -30.10 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 10 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C -0.10 -5.15 5.02 30.67 0.15 -4.99 16 12 C -0.11 -4.39 6.09 30.64 0.19 -4.21 16 13 C 0.06 2.26 5.14 86.33 0.44 2.70 16 14 N -0.54 -19.91 4.52 -871.14 -3.94 -23.85 16 15 C 0.09 2.56 1.95 44.92 0.09 2.64 16 16 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.11 -3.03 4.97 30.59 0.15 -2.88 16 18 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 19 C -0.10 -1.88 5.02 30.60 0.15 -1.72 16 20 C -0.04 -0.77 2.36 -11.54 -0.03 -0.80 16 21 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 22 C -0.08 -1.55 4.78 -19.87 -0.09 -1.65 16 23 C -0.13 -2.43 8.71 22.27 0.19 -2.23 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.29 9.67 22.27 0.22 -2.07 16 28 C -0.09 -2.24 3.94 30.59 0.12 -2.12 16 29 C 0.08 3.59 4.44 86.32 0.38 3.97 16 30 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.06 3.23 6.15 -2.39 -0.01 3.22 16 32 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 2.65 5.91 -2.39 -0.01 2.64 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.54 6.27 -2.39 -0.01 1.53 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.20 7.40 -2.39 -0.02 1.19 16 43 H 0.12 2.28 7.10 -2.91 -0.02 2.26 16 44 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.91 7.95 -2.91 -0.02 1.89 16 48 H 0.07 1.70 7.37 -2.39 -0.02 1.68 16 49 H 0.06 1.50 6.22 -2.39 -0.01 1.49 16 50 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 51 H 0.06 2.68 6.00 -2.38 -0.01 2.67 16 Total: -1.00 -62.70 379.07 2.66 -60.03 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.87 Total: 18.30 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.46 Total: -47.07 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -3.70 Total: -77.73 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.70 2.66 -60.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256117079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.435 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds