Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.99828 * 2 1 4 4 C 1.38235 * 119.99849 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99706 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99830 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.45292 * 28.96355 * 6 5 4 8 8 C 1.53038 * 109.46248 * 268.99046 * 6 5 4 9 9 H 1.09002 * 109.50616 * 300.74496 * 8 6 5 10 10 C 1.52996 * 109.53608 * 60.84510 * 8 6 5 11 11 C 1.53125 * 109.27872 * 180.80397 * 8 6 5 12 12 C 1.53125 * 109.15778 * 57.65417 * 11 8 6 13 13 C 1.53036 * 109.27788 * 302.34460 * 12 11 8 14 14 N 1.46843 * 109.52317 * 59.18410 * 13 12 11 15 15 C 1.46903 * 111.00088 * 174.16084 * 14 13 12 16 16 C 1.52995 * 109.47387 * 61.99440 * 15 14 13 17 17 C 1.50697 * 115.54861 * 294.15219 * 16 15 14 18 18 H 1.08001 * 120.00315 * 119.23856 * 17 16 15 19 19 C 1.37879 * 120.00197 * 299.23638 * 17 16 15 20 20 N 1.31516 * 120.00403 * 173.09888 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 353.10538 * 19 17 16 22 22 H 1.48494 * 109.47268 * 94.78658 * 21 19 17 23 23 H 1.48500 * 109.46949 * 214.78472 * 21 19 17 24 24 H 1.48500 * 109.47238 * 334.78211 * 21 19 17 25 25 C 1.52995 * 117.49912 * 148.48266 * 16 15 14 26 26 C 1.52995 * 117.50024 * 79.82200 * 16 15 14 27 27 C 1.38239 * 120.00261 * 0.25865 * 5 4 3 28 28 C 1.38233 * 119.99927 * 359.48760 * 27 5 4 29 29 H 1.08999 * 109.47320 * 89.99850 * 1 2 3 30 30 H 1.08994 * 109.47521 * 210.00381 * 1 2 3 31 31 H 1.09001 * 109.47289 * 330.00280 * 1 2 3 32 32 H 1.07998 * 120.00151 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.99820 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47245 * 179.82068 * 10 8 6 35 35 H 1.08994 * 109.46955 * 299.82034 * 10 8 6 36 36 H 1.09002 * 109.47263 * 59.82376 * 10 8 6 37 37 H 1.08999 * 109.52225 * 297.75519 * 11 8 6 38 38 H 1.08994 * 109.57660 * 177.59358 * 11 8 6 39 39 H 1.09005 * 109.49981 * 182.40538 * 12 11 8 40 40 H 1.08993 * 109.50511 * 62.28789 * 12 11 8 41 41 H 1.08997 * 109.46615 * 299.16521 * 13 12 11 42 42 H 1.09005 * 109.45920 * 179.19696 * 13 12 11 43 43 H 1.08999 * 109.46734 * 301.99467 * 15 14 13 44 44 H 1.09000 * 109.46939 * 181.99592 * 15 14 13 45 45 H 0.96998 * 120.00239 * 179.97438 * 20 19 17 46 46 H 1.08998 * 117.50223 * 0.02562 * 25 16 15 47 47 H 1.09002 * 117.49905 * 145.02261 * 25 16 15 48 48 H 1.09003 * 117.50074 * 214.98316 * 26 16 15 49 49 H 1.09003 * 117.49707 * 0.02562 * 26 16 15 50 50 H 1.08000 * 119.99625 * 179.72717 * 27 5 4 51 51 H 1.07997 * 120.00033 * 180.23176 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7786 0.0000 -0.0017 7 1 6.1421 0.8995 0.4953 8 6 6.2874 -0.0261 -1.4448 9 1 5.9130 -0.9183 -1.9466 10 6 5.7950 1.2200 -2.1835 11 6 7.8185 -0.0463 -1.4408 12 6 8.3029 -1.2643 -0.6492 13 6 7.7357 -1.2023 0.7708 14 7 6.2685 -1.1857 0.7128 15 6 5.6875 -1.2660 2.0597 16 6 6.1190 -0.0453 2.8749 17 6 7.5920 0.0449 3.1799 18 1 8.1665 0.8876 2.8247 19 6 8.2064 -0.9485 3.9127 20 7 9.5128 -0.9416 4.0641 21 14 7.1832 -2.3041 4.6903 22 1 7.1472 -3.4793 3.7834 23 1 7.7882 -2.6985 5.9878 24 1 5.8007 -1.8121 4.9181 25 6 5.1452 0.4780 3.9325 26 6 5.3651 1.2648 2.6381 27 6 3.5804 -1.1971 -0.0054 28 6 2.1981 -1.1972 0.0004 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1204 2.1325 -0.0010 34 1 6.1606 1.2019 -3.2102 35 1 4.7052 1.2338 -2.1861 36 1 6.1686 2.1119 -1.6805 37 1 8.1936 0.8643 -0.9736 38 1 8.1857 -0.1080 -2.4651 39 1 9.3921 -1.2608 -0.6065 40 1 7.9603 -2.1760 -1.1385 41 1 8.0899 -0.2973 1.2642 42 1 8.0671 -2.0756 1.3327 43 1 6.0363 -2.1736 2.5523 44 1 4.6002 -1.2876 1.9857 45 1 9.9450 -1.6402 4.5799 46 1 4.1973 -0.0476 4.0479 47 1 5.5700 0.8880 4.8488 48 1 5.9345 2.1920 2.7032 49 1 4.5614 1.2569 1.9017 50 1 4.1205 -2.1324 -0.0099 51 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307491438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = 49.510335 kcal Electronic energy + Delta-G solvation = -28635.470576 eV Core-core repulsion = 25306.986931 eV Total energy + Delta-G solvation = -3328.483645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29359 -38.18468 -36.46188 -33.44560 -33.09958 -32.13743 -30.68534 -30.55340 -27.69321 -26.04820 -25.79792 -25.17634 -22.61041 -22.23237 -21.47393 -20.93200 -20.29378 -19.17467 -18.59661 -16.56286 -15.82025 -15.45693 -15.02170 -14.97492 -14.35631 -14.22807 -13.95544 -13.78552 -13.53751 -13.48771 -13.17749 -13.05807 -12.84758 -12.40174 -12.31140 -12.06687 -11.98287 -11.92719 -11.69967 -11.51405 -11.16382 -10.97151 -10.87040 -10.73277 -10.55752 -10.45251 -10.30013 -10.23628 -10.06297 -9.71066 -9.66820 -9.37376 -8.99307 -8.68231 -8.55153 -8.37740 -8.06529 -7.33700 -6.14444 -4.05170 1.60957 1.69069 3.26571 3.38290 3.46769 4.01174 4.41169 4.59683 4.93174 4.98803 5.06327 5.12164 5.21580 5.28372 5.34021 5.36604 5.45893 5.56759 5.58918 5.70446 5.76899 5.83030 5.87676 5.93898 5.97354 6.00215 6.02939 6.07768 6.15196 6.23909 6.27597 6.31872 6.34644 6.39895 6.44595 6.52404 6.55035 6.58164 6.59871 6.70192 6.75553 6.80190 6.81907 6.83508 6.97126 7.05503 7.14035 7.22169 7.30349 7.50861 7.73671 7.97156 8.02703 8.47034 8.84371 9.49157 10.96542 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.006366 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.990954 B = 4397.231182 C = 5556.890696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.110 4.110 5 C -0.059 4.059 6 C 0.124 3.876 7 H 0.066 0.934 8 C -0.076 4.076 9 H 0.071 0.929 10 C -0.148 4.148 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.048 3.952 14 N -0.521 5.521 15 C 0.081 3.919 16 C -0.027 4.027 17 C -0.476 4.476 18 H 0.075 0.925 19 C 0.082 3.918 20 N -0.893 5.893 21 Si 0.866 3.134 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.252 1.252 25 C -0.196 4.196 26 C -0.195 4.195 27 C -0.095 4.095 28 C -0.128 4.128 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.264 0.736 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.132 0.868 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 1.524 -10.951 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.060 4.060 6 C 0.015 3.985 7 H 0.084 0.916 8 C -0.095 4.095 9 H 0.089 0.911 10 C -0.205 4.205 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.079 4.079 14 N -0.244 5.244 15 C -0.047 4.047 16 C -0.029 4.029 17 C -0.513 4.513 18 H 0.093 0.907 19 C -0.121 4.121 20 N -0.529 5.529 21 Si 0.694 3.306 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.176 1.176 25 C -0.235 4.235 26 C -0.232 4.232 27 C -0.113 4.113 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.149 0.851 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.968 0.994 -11.131 16.374 hybrid contribution -0.161 -0.085 1.169 1.183 sum -12.130 0.909 -9.961 15.722 Atomic orbital electron populations 1.20734 0.91884 1.02329 1.01736 1.19796 0.95542 0.93382 1.01206 1.20873 0.94066 0.97131 1.02328 1.20945 0.93921 0.97694 1.00280 1.19863 0.95549 0.92816 0.97724 1.20595 0.89293 0.94579 0.94010 0.91623 1.21104 0.95448 0.98199 0.94753 0.91081 1.21889 1.01221 0.97860 0.99563 1.21602 0.94762 0.99145 0.99368 1.21672 0.99550 0.97320 0.97151 1.22509 0.85991 1.05130 0.94283 1.62310 1.08866 1.37176 1.16024 1.21948 0.97479 0.97416 0.87823 1.20123 0.93922 0.91686 0.97168 1.20132 0.89310 1.08251 1.33589 0.90732 1.24817 0.94372 0.97361 0.95563 1.69894 1.08451 1.34304 1.40287 0.87046 0.82369 0.82513 0.78675 1.20484 1.22267 1.17557 1.22966 1.00673 1.06190 0.93634 1.23135 1.03544 0.96550 0.99989 1.21139 0.93351 0.98801 0.98027 1.20996 0.94391 0.97090 1.02130 0.91709 0.91941 0.91956 0.86733 0.86364 0.93112 0.92441 0.92878 0.92171 0.92828 0.92227 0.92728 0.88512 0.91689 0.92078 0.92221 0.92605 0.91756 0.90151 0.90609 0.89449 0.85059 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.10 -1.26 5.88 -104.62 -0.62 -1.88 16 3 C -0.13 -1.64 9.70 -39.58 -0.38 -2.02 16 4 C -0.11 -1.57 5.73 -39.58 -0.23 -1.79 16 5 C -0.06 -0.92 2.49 -104.62 -0.26 -1.18 16 6 C 0.12 2.08 0.94 -68.87 -0.06 2.02 16 7 H 0.07 1.24 5.82 -51.93 -0.30 0.94 16 8 C -0.08 -1.13 2.39 -90.54 -0.22 -1.34 16 9 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 10 C -0.15 -1.87 8.67 37.16 0.32 -1.55 16 11 C -0.11 -1.68 5.29 -26.60 -0.14 -1.82 16 12 C -0.12 -2.02 6.09 -26.65 -0.16 -2.19 16 13 C 0.05 0.98 4.18 -3.84 -0.02 0.97 16 14 N -0.52 -9.94 3.89 -228.08 -0.89 -10.83 16 15 C 0.08 1.70 4.40 -3.82 -0.02 1.68 16 16 C -0.03 -0.60 0.45 -155.67 -0.07 -0.67 16 17 C -0.48 -12.32 5.92 -34.44 -0.20 -12.53 16 18 H 0.07 2.14 7.78 -52.49 -0.41 1.74 16 19 C 0.08 2.21 4.97 -17.82 -0.09 2.12 16 20 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 21 Si 0.87 21.13 24.78 -169.99 -4.21 16.92 16 22 H -0.28 -6.73 6.99 56.52 0.40 -6.33 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.25 -5.95 5.97 56.52 0.34 -5.61 16 25 C -0.20 -4.22 8.46 -26.70 -0.23 -4.45 16 26 C -0.20 -3.95 7.80 -26.70 -0.21 -4.15 16 27 C -0.10 -1.45 7.42 -39.58 -0.29 -1.75 16 28 C -0.13 -1.74 9.70 -39.59 -0.38 -2.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.60 8.00 -52.49 -0.42 1.18 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.72 6.26 -51.93 -0.32 0.40 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 2.29 4.90 -51.93 -0.25 2.03 16 42 H 0.06 1.49 7.88 -51.93 -0.41 1.08 16 43 H 0.06 1.39 4.54 -51.93 -0.24 1.15 16 44 H 0.06 1.19 5.41 -51.93 -0.28 0.91 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 48 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 49 H 0.09 1.61 3.71 -51.93 -0.19 1.41 16 50 H 0.13 2.09 7.30 -52.49 -0.38 1.70 16 51 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -27.17 364.93 -10.47 -37.65 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.75 Total: 9.05 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.89 Total: -33.37 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.11 Total: -35.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.21 Total: 16.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.17 -10.47 -37.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307491438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.157 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds