Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.99828 * 2 1 4 4 C 1.38235 * 119.99849 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99706 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99830 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.45292 * 28.96355 * 6 5 4 8 8 C 1.53038 * 109.46248 * 268.99046 * 6 5 4 9 9 H 1.09002 * 109.50616 * 300.74496 * 8 6 5 10 10 C 1.52996 * 109.53608 * 60.84510 * 8 6 5 11 11 C 1.53125 * 109.27872 * 180.80397 * 8 6 5 12 12 C 1.53125 * 109.15778 * 57.65417 * 11 8 6 13 13 C 1.53036 * 109.27788 * 302.34460 * 12 11 8 14 14 N 1.46843 * 109.52317 * 59.18410 * 13 12 11 15 15 C 1.46903 * 111.00088 * 174.16084 * 14 13 12 16 16 C 1.52995 * 109.47387 * 61.99440 * 15 14 13 17 17 C 1.50697 * 115.54861 * 294.15219 * 16 15 14 18 18 H 1.08001 * 120.00315 * 119.23856 * 17 16 15 19 19 C 1.37879 * 120.00197 * 299.23638 * 17 16 15 20 20 N 1.31516 * 120.00403 * 173.09888 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 353.10538 * 19 17 16 22 22 H 1.48494 * 109.47268 * 94.78658 * 21 19 17 23 23 H 1.48500 * 109.46949 * 214.78472 * 21 19 17 24 24 H 1.48500 * 109.47238 * 334.78211 * 21 19 17 25 25 C 1.52995 * 117.49912 * 148.48266 * 16 15 14 26 26 C 1.52995 * 117.50024 * 79.82200 * 16 15 14 27 27 C 1.38239 * 120.00261 * 0.25865 * 5 4 3 28 28 C 1.38233 * 119.99927 * 359.48760 * 27 5 4 29 29 H 1.08999 * 109.47320 * 89.99850 * 1 2 3 30 30 H 1.08994 * 109.47521 * 210.00381 * 1 2 3 31 31 H 1.09001 * 109.47289 * 330.00280 * 1 2 3 32 32 H 1.07998 * 120.00151 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.99820 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47245 * 179.82068 * 10 8 6 35 35 H 1.08994 * 109.46955 * 299.82034 * 10 8 6 36 36 H 1.09002 * 109.47263 * 59.82376 * 10 8 6 37 37 H 1.08999 * 109.52225 * 297.75519 * 11 8 6 38 38 H 1.08994 * 109.57660 * 177.59358 * 11 8 6 39 39 H 1.09005 * 109.49981 * 182.40538 * 12 11 8 40 40 H 1.08993 * 109.50511 * 62.28789 * 12 11 8 41 41 H 1.08997 * 109.46615 * 299.16521 * 13 12 11 42 42 H 1.09005 * 109.45920 * 179.19696 * 13 12 11 43 43 H 1.08999 * 109.46734 * 301.99467 * 15 14 13 44 44 H 1.09000 * 109.46939 * 181.99592 * 15 14 13 45 45 H 0.96998 * 120.00239 * 179.97438 * 20 19 17 46 46 H 1.08998 * 117.50223 * 0.02562 * 25 16 15 47 47 H 1.09002 * 117.49905 * 145.02261 * 25 16 15 48 48 H 1.09003 * 117.50074 * 214.98316 * 26 16 15 49 49 H 1.09003 * 117.49707 * 0.02562 * 26 16 15 50 50 H 1.08000 * 119.99625 * 179.72717 * 27 5 4 51 51 H 1.07997 * 120.00033 * 180.23176 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7786 0.0000 -0.0017 7 1 6.1421 0.8995 0.4953 8 6 6.2874 -0.0261 -1.4448 9 1 5.9130 -0.9183 -1.9466 10 6 5.7950 1.2200 -2.1835 11 6 7.8185 -0.0463 -1.4408 12 6 8.3029 -1.2643 -0.6492 13 6 7.7357 -1.2023 0.7708 14 7 6.2685 -1.1857 0.7128 15 6 5.6875 -1.2660 2.0597 16 6 6.1190 -0.0453 2.8749 17 6 7.5920 0.0449 3.1799 18 1 8.1665 0.8876 2.8247 19 6 8.2064 -0.9485 3.9127 20 7 9.5128 -0.9416 4.0641 21 14 7.1832 -2.3041 4.6903 22 1 7.1472 -3.4793 3.7834 23 1 7.7882 -2.6985 5.9878 24 1 5.8007 -1.8121 4.9181 25 6 5.1452 0.4780 3.9325 26 6 5.3651 1.2648 2.6381 27 6 3.5804 -1.1971 -0.0054 28 6 2.1981 -1.1972 0.0004 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1204 2.1325 -0.0010 34 1 6.1606 1.2019 -3.2102 35 1 4.7052 1.2338 -2.1861 36 1 6.1686 2.1119 -1.6805 37 1 8.1936 0.8643 -0.9736 38 1 8.1857 -0.1080 -2.4651 39 1 9.3921 -1.2608 -0.6065 40 1 7.9603 -2.1760 -1.1385 41 1 8.0899 -0.2973 1.2642 42 1 8.0671 -2.0756 1.3327 43 1 6.0363 -2.1736 2.5523 44 1 4.6002 -1.2876 1.9857 45 1 9.9450 -1.6402 4.5799 46 1 4.1973 -0.0476 4.0479 47 1 5.5700 0.8880 4.8488 48 1 5.9345 2.1920 2.7032 49 1 4.5614 1.2569 1.9017 50 1 4.1205 -2.1324 -0.0099 51 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307491438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = 36.531647 kcal Electronic energy + Delta-G solvation = -28636.033374 eV Core-core repulsion = 25306.986931 eV Total energy + Delta-G solvation = -3329.046443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63586 -39.43180 -38.04624 -34.78186 -34.51116 -34.07364 -31.81955 -31.67675 -29.01524 -27.71153 -27.32981 -26.50659 -23.83846 -23.54337 -22.99369 -22.37881 -21.46076 -20.91857 -20.07589 -18.43943 -17.16222 -17.00607 -16.39685 -16.16448 -15.94827 -15.61593 -15.20351 -15.18027 -14.86635 -14.81614 -14.76073 -14.35516 -14.11178 -13.90159 -13.57933 -13.50599 -13.33188 -12.91978 -12.88331 -12.85735 -12.77052 -12.64848 -12.30816 -12.09380 -12.02384 -11.91728 -11.78157 -11.68310 -11.58436 -11.27571 -11.13096 -10.95257 -10.84399 -10.64119 -10.25380 -9.61511 -9.15768 -8.99241 -8.27860 -6.18236 0.55058 0.62734 1.28600 1.35426 1.47623 2.35682 2.90746 2.95879 3.23839 3.38214 3.80566 4.02378 4.06641 4.10090 4.15683 4.20835 4.24142 4.31232 4.35864 4.43931 4.49413 4.56266 4.63863 4.68472 4.75201 4.77335 4.80801 4.88996 4.91271 4.93258 4.97641 5.00247 5.03465 5.05766 5.10215 5.12819 5.15964 5.24832 5.31153 5.32175 5.38229 5.40013 5.47640 5.50552 5.54347 5.62579 5.73132 5.77752 5.82807 5.86958 6.24449 6.26734 6.39791 6.50091 6.72902 7.36378 8.86982 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.006366 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.990954 B = 4397.231182 C = 5556.890696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.074 4.074 6 C 0.128 3.872 7 H 0.041 0.959 8 C -0.073 4.073 9 H 0.073 0.927 10 C -0.140 4.140 11 C -0.107 4.107 12 C -0.114 4.114 13 C 0.058 3.942 14 N -0.515 5.515 15 C 0.089 3.911 16 C -0.045 4.045 17 C -0.457 4.457 18 H 0.032 0.968 19 C 0.038 3.962 20 N -0.938 5.938 21 Si 0.914 3.086 22 H -0.277 1.277 23 H -0.302 1.302 24 H -0.235 1.235 25 C -0.195 4.195 26 C -0.173 4.173 27 C -0.109 4.109 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.262 0.738 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.112 0.888 50 H 0.119 0.881 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.614 1.735 -12.657 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.075 4.075 6 C 0.020 3.980 7 H 0.059 0.941 8 C -0.091 4.091 9 H 0.091 0.909 10 C -0.197 4.197 11 C -0.144 4.144 12 C -0.152 4.152 13 C -0.070 4.070 14 N -0.237 5.237 15 C -0.039 4.039 16 C -0.047 4.047 17 C -0.495 4.495 18 H 0.050 0.950 19 C -0.161 4.161 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.203 1.203 23 H -0.229 1.229 24 H -0.157 1.157 25 C -0.233 4.233 26 C -0.210 4.210 27 C -0.128 4.128 28 C -0.149 4.149 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.130 0.870 50 H 0.137 0.863 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.602 1.218 -12.848 20.248 hybrid contribution 0.936 -0.072 1.635 1.885 sum -14.667 1.145 -11.213 18.498 Atomic orbital electron populations 1.20792 0.89547 1.03302 1.02939 1.20180 0.97285 0.92822 0.99469 1.21179 0.93559 0.98413 1.01217 1.21032 0.94733 0.97243 1.00563 1.19725 0.94326 0.93702 0.99698 1.20580 0.90719 0.92122 0.94580 0.94091 1.21099 0.94867 0.99535 0.93638 0.90893 1.21815 1.01413 0.96348 1.00157 1.21584 0.95285 0.97279 1.00298 1.21611 0.99358 0.99069 0.95148 1.22201 0.87257 1.01533 0.95963 1.62328 1.07520 1.38665 1.15155 1.21833 0.98305 0.95537 0.88268 1.20038 0.91926 0.93878 0.98878 1.20132 0.91128 1.06262 1.31959 0.94998 1.25378 0.94943 0.99389 0.96361 1.70014 1.10095 1.35518 1.42141 0.86270 0.81823 0.80397 0.77420 1.20297 1.22933 1.15739 1.22983 1.00767 1.06196 0.93381 1.23140 1.03144 0.95020 0.99705 1.21112 0.94302 0.98117 0.99237 1.21228 0.93728 0.98442 1.01500 0.90289 0.91174 0.90868 0.84406 0.86019 0.91248 0.92045 0.93138 0.93506 0.90051 0.92399 0.91508 0.92282 0.95000 0.94067 0.90586 0.92845 0.89842 0.91222 0.91474 0.87042 0.86263 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 4 C -0.12 -3.03 5.73 22.27 0.13 -2.90 16 5 C -0.07 -2.17 2.49 -19.87 -0.05 -2.22 16 6 C 0.13 4.24 0.94 44.19 0.04 4.28 16 7 H 0.04 1.57 5.82 -2.38 -0.01 1.55 16 8 C -0.07 -2.04 2.39 -10.74 -0.03 -2.07 16 9 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 10 C -0.14 -3.22 8.67 71.98 0.62 -2.60 16 11 C -0.11 -3.14 5.29 30.68 0.16 -2.98 16 12 C -0.11 -3.92 6.09 30.65 0.19 -3.73 16 13 C 0.06 2.50 4.18 86.33 0.36 2.86 16 14 N -0.51 -19.79 3.89 -875.50 -3.40 -23.20 16 15 C 0.09 3.70 4.40 86.30 0.38 4.08 16 16 C -0.05 -2.02 0.45 -52.93 -0.02 -2.04 16 17 C -0.46 -24.81 5.92 25.60 0.15 -24.66 16 18 H 0.03 1.97 7.78 -2.91 -0.02 1.95 16 19 C 0.04 2.11 4.97 84.65 0.42 2.54 16 20 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 21 Si 0.91 44.60 24.78 68.60 1.70 46.30 16 22 H -0.28 -13.31 6.99 99.48 0.70 -12.62 16 23 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 24 H -0.23 -10.66 5.97 99.48 0.59 -10.07 16 25 C -0.19 -8.15 8.46 30.62 0.26 -7.89 16 26 C -0.17 -6.89 7.80 30.62 0.24 -6.65 16 27 C -0.11 -3.12 7.42 22.27 0.17 -2.95 16 28 C -0.13 -3.14 9.70 22.27 0.22 -2.93 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.12 3.01 8.00 -2.91 -0.02 2.99 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.38 6.26 -2.39 -0.01 1.37 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 2.98 4.90 -2.39 -0.01 2.97 16 42 H 0.03 1.54 7.88 -2.38 -0.02 1.52 16 43 H 0.04 1.87 4.54 -2.39 -0.01 1.86 16 44 H 0.08 2.93 5.41 -2.39 -0.01 2.91 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 48 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 49 H 0.11 3.90 3.71 -2.39 -0.01 3.89 16 50 H 0.12 3.64 7.30 -2.91 -0.02 3.62 16 51 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -61.45 364.93 3.41 -58.04 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.77 Total: 31.02 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 4.05 Total: -55.59 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -3.10 Total: -79.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.70 Total: 46.30 kcal Total: -61.45 3.41 -58.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307491438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.569 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds