Wall clock time and date at job start Tue Mar 31 2020 11:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 N 1.46894 * 109.47196 * 120.00152 * 2 1 3 5 5 C 1.46899 * 111.00211 * 306.57779 * 4 2 1 6 6 C 1.50705 * 109.46795 * 287.23793 * 5 4 2 7 7 H 1.07999 * 119.99982 * 357.68378 * 6 5 4 8 8 C 1.37878 * 119.99921 * 177.67851 * 6 5 4 9 9 N 1.31517 * 120.00079 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47347 * 90.00017 * 10 8 6 12 12 H 1.48502 * 109.46959 * 209.99966 * 10 8 6 13 13 H 1.48494 * 109.47153 * 329.99950 * 10 8 6 14 14 C 1.46899 * 111.00028 * 70.52754 * 4 2 1 15 15 C 1.50704 * 109.47001 * 74.70997 * 14 4 2 16 16 C 1.38260 * 120.00204 * 83.66386 * 15 14 4 17 17 C 1.38215 * 119.99927 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.00204 * 0.03059 * 17 16 15 19 19 C 1.50694 * 119.99868 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50041 * 299.99752 * 19 18 17 21 21 C 1.53002 * 60.03030 * 107.48088 * 20 19 18 22 22 C 1.38211 * 119.99811 * 0.24407 * 18 17 16 23 23 C 1.50703 * 120.00022 * 179.72677 * 22 18 17 24 24 C 1.52995 * 117.50134 * 188.75068 * 23 22 18 25 25 C 1.52998 * 117.49611 * 120.08898 * 23 22 18 26 26 C 1.38213 * 119.99957 * 263.69044 * 15 14 4 27 27 H 1.09000 * 109.46784 * 308.12447 * 1 2 3 28 28 H 1.08997 * 109.47024 * 68.12263 * 1 2 3 29 29 H 1.08998 * 109.46848 * 188.12807 * 1 2 3 30 30 H 1.09004 * 109.46505 * 240.00301 * 2 1 3 31 31 H 1.08999 * 109.47156 * 171.71829 * 3 2 1 32 32 H 1.08999 * 109.47389 * 291.71635 * 3 2 1 33 33 H 1.09000 * 109.47347 * 51.71490 * 3 2 1 34 34 H 1.09001 * 109.47417 * 47.23675 * 5 4 2 35 35 H 1.08999 * 109.47702 * 167.24025 * 5 4 2 36 36 H 0.97003 * 120.00066 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47598 * 314.70895 * 14 4 2 38 38 H 1.09001 * 109.47495 * 194.70255 * 14 4 2 39 39 H 1.08001 * 119.99904 * 0.02562 * 16 15 14 40 40 H 1.08007 * 119.99655 * 179.97438 * 17 16 15 41 41 H 1.09000 * 115.55238 * 154.32744 * 19 18 17 42 42 H 1.08996 * 117.49439 * 214.98091 * 20 19 18 43 43 H 1.08997 * 117.49740 * 359.97438 * 20 19 18 44 44 H 1.09001 * 117.50027 * 107.50846 * 21 20 19 45 45 H 1.08999 * 117.49591 * 252.51948 * 21 20 19 46 46 H 1.09000 * 115.54489 * 334.42123 * 23 22 18 47 47 H 1.09009 * 117.49970 * 0.02562 * 24 23 22 48 48 H 1.08994 * 117.50069 * 145.01909 * 24 23 22 49 49 H 1.09002 * 117.49820 * 214.97717 * 25 23 22 50 50 H 1.08993 * 117.50086 * 359.97438 * 25 23 22 51 51 H 1.07994 * 120.00057 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4247 -0.1232 2.4158 6 6 2.0329 1.2287 2.6871 7 1 2.8126 1.6090 2.0438 8 6 1.5939 1.9801 3.7565 9 7 0.6440 1.5173 4.5396 10 14 2.3472 3.6562 4.0924 11 1 1.5802 4.6986 3.3642 12 1 2.3020 3.9360 5.5501 13 1 3.7583 3.6662 3.6300 14 6 1.7642 -2.1366 1.1147 15 6 2.7363 -2.7629 0.1482 16 6 4.0022 -3.1196 0.5746 17 6 4.8935 -3.6945 -0.3116 18 6 4.5195 -3.9122 -1.6247 19 6 5.4915 -4.5385 -2.5910 20 6 6.8104 -3.8046 -2.8417 21 6 6.7979 -5.0944 -2.0188 22 6 3.2559 -3.5505 -2.0523 23 6 2.8503 -3.7822 -3.4851 24 6 1.5234 -3.1790 -3.9501 25 6 1.6457 -4.6904 -3.7402 26 6 2.3625 -2.9802 -1.1645 27 1 -0.3633 0.6345 0.8084 28 1 -0.3633 0.3829 -0.9536 29 1 -0.3633 -1.0173 0.1453 30 1 1.8933 -0.5138 -0.8901 31 1 3.1199 1.4461 0.1480 32 1 1.8027 1.9118 -0.9547 33 1 1.5609 1.9973 0.8066 34 1 0.3487 -0.0165 2.2784 35 1 1.6194 -0.7850 3.2597 36 1 0.3353 2.0458 5.2922 37 1 0.7454 -2.3056 0.7659 38 1 1.8905 -2.5864 2.0995 39 1 4.2943 -2.9498 1.6004 40 1 5.8826 -3.9727 0.0214 41 1 5.0433 -5.0692 -3.4311 42 1 7.2300 -3.8528 -3.8465 43 1 6.9748 -2.8686 -2.3079 44 1 7.2094 -5.9911 -2.4822 45 1 6.9537 -5.0069 -0.9436 46 1 3.6676 -3.8161 -4.2054 47 1 0.9439 -2.6141 -3.2198 48 1 1.4676 -2.8164 -4.9764 49 1 1.6703 -5.3214 -4.6286 50 1 1.1469 -5.1205 -2.8718 51 1 1.3740 -2.7009 -1.4978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308587439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:47 Heat of formation + Delta-G solvation = 80.297894 kcal Electronic energy + Delta-G solvation = -26623.929671 eV Core-core repulsion = 23296.781075 eV Total energy + Delta-G solvation = -3327.148596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12928 -37.96534 -37.23016 -36.17224 -32.65647 -31.88717 -30.34783 -29.93477 -27.54132 -26.23893 -24.96351 -23.93888 -22.62727 -22.48381 -22.25487 -22.07739 -20.40024 -19.63038 -18.48261 -16.92170 -16.39661 -15.75683 -15.41849 -15.18448 -14.68588 -14.58445 -14.36468 -14.04864 -13.82562 -13.64154 -13.24235 -12.77477 -12.61546 -12.19268 -12.12774 -11.92727 -11.74746 -11.55714 -11.51039 -11.32947 -11.17655 -10.95356 -10.91140 -10.77394 -10.75813 -10.64102 -10.50924 -10.44081 -10.40293 -10.28909 -10.22277 -10.10820 -9.34447 -8.94470 -8.46269 -8.34670 -8.04840 -7.14096 -5.98680 -3.95325 1.52461 1.61431 3.32859 3.39870 3.43998 3.57654 3.79198 4.19371 4.46203 4.50538 4.56450 4.77698 4.80475 4.86831 4.95385 5.02810 5.13642 5.18759 5.23645 5.34738 5.36257 5.46537 5.52622 5.60223 5.69882 5.71154 5.73842 5.82142 5.88292 5.95214 5.95982 5.99104 6.01001 6.09504 6.11863 6.15694 6.29729 6.37369 6.40079 6.59143 6.64157 6.74323 6.78369 6.82657 6.99271 7.04425 7.25484 7.29063 7.45616 7.52446 7.88866 8.17445 8.27589 8.60943 9.09739 9.64558 11.11914 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.419586 B = 8020.206360 C = 8817.994976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 C -0.145 4.145 4 N -0.523 5.523 5 C 0.185 3.815 6 C -0.500 4.500 7 H 0.075 0.925 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.891 3.109 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.085 3.915 15 C -0.055 4.055 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.058 4.058 19 C -0.110 4.110 20 C -0.172 4.172 21 C -0.180 4.180 22 C -0.051 4.051 23 C -0.111 4.111 24 C -0.178 4.178 25 C -0.172 4.172 26 C -0.113 4.113 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.095 0.905 34 H 0.005 0.995 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 -12.898 -16.001 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.018 4.018 3 C -0.202 4.202 4 N -0.247 5.247 5 C 0.061 3.939 6 C -0.538 4.538 7 H 0.093 0.907 8 C -0.148 4.148 9 N -0.541 5.541 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.043 4.043 15 C -0.056 4.056 16 C -0.115 4.115 17 C -0.138 4.138 18 C -0.058 4.058 19 C -0.128 4.128 20 C -0.209 4.209 21 C -0.216 4.216 22 C -0.051 4.051 23 C -0.129 4.129 24 C -0.215 4.215 25 C -0.209 4.209 26 C -0.131 4.131 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.023 0.977 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.137 -12.766 -15.789 21.212 hybrid contribution -0.554 0.815 0.267 1.021 sum 5.582 -11.951 -15.522 20.370 Atomic orbital electron populations 1.22455 0.98926 1.01119 1.01668 1.21429 0.91656 0.95825 0.92868 1.22240 1.01634 0.95663 1.00652 1.62375 1.59240 0.99251 1.03847 1.19877 0.93662 0.95053 0.85352 1.21453 1.19966 1.01197 1.11211 0.90708 1.24982 0.95421 0.98287 0.96156 1.69963 1.28969 1.37944 1.17213 0.86603 0.79782 0.84427 0.77293 1.20802 1.21414 1.19780 1.21083 0.94588 0.91173 0.97484 1.19939 0.95297 0.96287 0.94093 1.21006 0.92990 0.97559 0.99942 1.20937 0.99528 1.00437 0.92917 1.18742 0.93406 1.00223 0.93436 1.20986 0.88210 1.03274 1.00342 1.23015 0.99930 0.96648 1.01276 1.23061 1.00740 0.97510 1.00333 1.18750 0.93455 0.99695 0.93158 1.20982 0.92057 1.05255 0.94583 1.23071 1.00010 0.95962 1.02423 1.23010 1.01503 0.93223 1.03168 1.20879 0.99409 0.99993 0.92859 0.90906 0.93710 0.93808 0.92356 0.92846 0.95505 0.88639 0.97692 0.95909 0.93106 0.94700 0.90644 0.85884 0.86392 0.87217 0.88811 0.88502 0.88782 0.88343 0.87172 0.88259 0.88677 0.88816 0.88669 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.32 37.16 0.31 -3.04 16 2 C 0.09 1.76 2.83 -67.71 -0.19 1.57 16 3 C -0.14 -2.91 7.69 37.16 0.29 -2.62 16 4 N -0.52 -10.98 4.42 -229.52 -1.01 -11.99 16 5 C 0.19 4.64 4.48 -4.97 -0.02 4.62 16 6 C -0.50 -13.43 6.68 -34.44 -0.23 -13.66 16 7 H 0.07 2.00 5.36 -52.49 -0.28 1.71 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 10 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.53 5.02 -4.97 -0.02 1.51 16 15 C -0.06 -0.90 4.99 -104.62 -0.52 -1.42 16 16 C -0.10 -1.49 9.73 -39.58 -0.39 -1.87 16 17 C -0.12 -1.63 9.30 -39.58 -0.37 -2.00 16 18 C -0.06 -0.75 5.61 -104.63 -0.59 -1.33 16 19 C -0.11 -1.14 5.27 -91.74 -0.48 -1.62 16 20 C -0.17 -1.61 10.16 -26.73 -0.27 -1.88 16 21 C -0.18 -1.61 9.86 -26.69 -0.26 -1.88 16 22 C -0.05 -0.67 5.61 -104.62 -0.59 -1.26 16 23 C -0.11 -1.20 5.28 -91.77 -0.48 -1.68 16 24 C -0.18 -1.79 9.86 -26.70 -0.26 -2.05 16 25 C -0.17 -1.63 10.16 -26.69 -0.27 -1.91 16 26 C -0.11 -1.65 7.64 -39.58 -0.30 -1.95 16 27 H 0.07 1.53 6.49 -51.93 -0.34 1.19 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.76 6.26 -51.93 -0.33 0.43 16 30 H 0.06 1.07 6.31 -51.93 -0.33 0.74 16 31 H 0.05 1.11 7.48 -51.93 -0.39 0.72 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 2.17 5.45 -51.93 -0.28 1.89 16 34 H 0.01 0.14 5.69 -51.93 -0.30 -0.15 16 35 H 0.02 0.62 7.68 -51.93 -0.40 0.22 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.03 0.61 6.03 -51.93 -0.31 0.30 16 38 H 0.08 1.38 7.64 -51.93 -0.40 0.98 16 39 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 1.38 6.02 -52.48 -0.32 1.06 16 41 H 0.11 1.04 6.86 -51.93 -0.36 0.68 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.89 6.18 -51.93 -0.32 0.57 16 46 H 0.11 1.09 6.85 -51.93 -0.36 0.73 16 47 H 0.10 1.08 6.19 -51.92 -0.32 0.76 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.12 1.64 5.99 -52.49 -0.31 1.33 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -28.59 386.49 -12.51 -41.09 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.27 Total: 5.39 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -4.76 Total: -31.15 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.28 Total: -37.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.59 -12.51 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308587439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.392 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds