Wall clock time and date at job start Tue Mar 31 2020 11:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 N 1.46894 * 109.47196 * 120.00152 * 2 1 3 5 5 C 1.46899 * 111.00211 * 306.57779 * 4 2 1 6 6 C 1.50705 * 109.46795 * 287.23793 * 5 4 2 7 7 H 1.07999 * 119.99982 * 357.68378 * 6 5 4 8 8 C 1.37878 * 119.99921 * 177.67851 * 6 5 4 9 9 N 1.31517 * 120.00079 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47347 * 90.00017 * 10 8 6 12 12 H 1.48502 * 109.46959 * 209.99966 * 10 8 6 13 13 H 1.48494 * 109.47153 * 329.99950 * 10 8 6 14 14 C 1.46899 * 111.00028 * 70.52754 * 4 2 1 15 15 C 1.50704 * 109.47001 * 74.70997 * 14 4 2 16 16 C 1.38260 * 120.00204 * 83.66386 * 15 14 4 17 17 C 1.38215 * 119.99927 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.00204 * 0.03059 * 17 16 15 19 19 C 1.50694 * 119.99868 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50041 * 299.99752 * 19 18 17 21 21 C 1.53002 * 60.03030 * 107.48088 * 20 19 18 22 22 C 1.38211 * 119.99811 * 0.24407 * 18 17 16 23 23 C 1.50703 * 120.00022 * 179.72677 * 22 18 17 24 24 C 1.52995 * 117.50134 * 188.75068 * 23 22 18 25 25 C 1.52998 * 117.49611 * 120.08898 * 23 22 18 26 26 C 1.38213 * 119.99957 * 263.69044 * 15 14 4 27 27 H 1.09000 * 109.46784 * 308.12447 * 1 2 3 28 28 H 1.08997 * 109.47024 * 68.12263 * 1 2 3 29 29 H 1.08998 * 109.46848 * 188.12807 * 1 2 3 30 30 H 1.09004 * 109.46505 * 240.00301 * 2 1 3 31 31 H 1.08999 * 109.47156 * 171.71829 * 3 2 1 32 32 H 1.08999 * 109.47389 * 291.71635 * 3 2 1 33 33 H 1.09000 * 109.47347 * 51.71490 * 3 2 1 34 34 H 1.09001 * 109.47417 * 47.23675 * 5 4 2 35 35 H 1.08999 * 109.47702 * 167.24025 * 5 4 2 36 36 H 0.97003 * 120.00066 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47598 * 314.70895 * 14 4 2 38 38 H 1.09001 * 109.47495 * 194.70255 * 14 4 2 39 39 H 1.08001 * 119.99904 * 0.02562 * 16 15 14 40 40 H 1.08007 * 119.99655 * 179.97438 * 17 16 15 41 41 H 1.09000 * 115.55238 * 154.32744 * 19 18 17 42 42 H 1.08996 * 117.49439 * 214.98091 * 20 19 18 43 43 H 1.08997 * 117.49740 * 359.97438 * 20 19 18 44 44 H 1.09001 * 117.50027 * 107.50846 * 21 20 19 45 45 H 1.08999 * 117.49591 * 252.51948 * 21 20 19 46 46 H 1.09000 * 115.54489 * 334.42123 * 23 22 18 47 47 H 1.09009 * 117.49970 * 0.02562 * 24 23 22 48 48 H 1.08994 * 117.50069 * 145.01909 * 24 23 22 49 49 H 1.09002 * 117.49820 * 214.97717 * 25 23 22 50 50 H 1.08993 * 117.50086 * 359.97438 * 25 23 22 51 51 H 1.07994 * 120.00057 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4247 -0.1232 2.4158 6 6 2.0329 1.2287 2.6871 7 1 2.8126 1.6090 2.0438 8 6 1.5939 1.9801 3.7565 9 7 0.6440 1.5173 4.5396 10 14 2.3472 3.6562 4.0924 11 1 1.5802 4.6986 3.3642 12 1 2.3020 3.9360 5.5501 13 1 3.7583 3.6662 3.6300 14 6 1.7642 -2.1366 1.1147 15 6 2.7363 -2.7629 0.1482 16 6 4.0022 -3.1196 0.5746 17 6 4.8935 -3.6945 -0.3116 18 6 4.5195 -3.9122 -1.6247 19 6 5.4915 -4.5385 -2.5910 20 6 6.8104 -3.8046 -2.8417 21 6 6.7979 -5.0944 -2.0188 22 6 3.2559 -3.5505 -2.0523 23 6 2.8503 -3.7822 -3.4851 24 6 1.5234 -3.1790 -3.9501 25 6 1.6457 -4.6904 -3.7402 26 6 2.3625 -2.9802 -1.1645 27 1 -0.3633 0.6345 0.8084 28 1 -0.3633 0.3829 -0.9536 29 1 -0.3633 -1.0173 0.1453 30 1 1.8933 -0.5138 -0.8901 31 1 3.1199 1.4461 0.1480 32 1 1.8027 1.9118 -0.9547 33 1 1.5609 1.9973 0.8066 34 1 0.3487 -0.0165 2.2784 35 1 1.6194 -0.7850 3.2597 36 1 0.3353 2.0458 5.2922 37 1 0.7454 -2.3056 0.7659 38 1 1.8905 -2.5864 2.0995 39 1 4.2943 -2.9498 1.6004 40 1 5.8826 -3.9727 0.0214 41 1 5.0433 -5.0692 -3.4311 42 1 7.2300 -3.8528 -3.8465 43 1 6.9748 -2.8686 -2.3079 44 1 7.2094 -5.9911 -2.4822 45 1 6.9537 -5.0069 -0.9436 46 1 3.6676 -3.8161 -4.2054 47 1 0.9439 -2.6141 -3.2198 48 1 1.4676 -2.8164 -4.9764 49 1 1.6703 -5.3214 -4.6286 50 1 1.1469 -5.1205 -2.8718 51 1 1.3740 -2.7009 -1.4978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308587439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:46 Heat of formation + Delta-G solvation = 68.247821 kcal Electronic energy + Delta-G solvation = -26624.452201 eV Core-core repulsion = 23296.781075 eV Total energy + Delta-G solvation = -3327.671126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18227 -39.47047 -38.01691 -37.23224 -34.69827 -33.25934 -31.48479 -31.38365 -29.32467 -27.84374 -26.42651 -24.96055 -24.08788 -23.56515 -23.19788 -23.06219 -21.36303 -20.77202 -20.00562 -18.50294 -17.78405 -16.95078 -16.70917 -16.54310 -16.21831 -15.79397 -15.56106 -15.24291 -14.96266 -14.92468 -14.68472 -14.22626 -13.98531 -13.77464 -13.23912 -13.17808 -13.07387 -12.93456 -12.88773 -12.62177 -12.55941 -12.46301 -12.37339 -12.25203 -12.02455 -11.94599 -11.87210 -11.64075 -11.55739 -11.45635 -11.19813 -11.14231 -11.08377 -10.89587 -10.48943 -9.54438 -9.12568 -8.86522 -8.12105 -6.15235 0.41895 0.50838 1.41427 1.42390 1.53280 2.43097 2.59552 3.03746 3.19705 3.26057 3.50808 3.66723 3.72470 3.88625 3.97204 4.02864 4.09804 4.15992 4.19100 4.22740 4.30475 4.32829 4.37310 4.45148 4.56097 4.58858 4.69006 4.73361 4.82985 4.85077 4.86080 4.97195 4.99431 5.03082 5.04853 5.12503 5.16213 5.20825 5.24507 5.26169 5.26369 5.29455 5.31654 5.34141 5.57075 5.65089 5.75282 5.78421 5.78849 5.83780 6.14379 6.18139 6.48737 6.72339 6.96901 7.48807 8.98416 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.419586 B = 8020.206360 C = 8817.994976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 C -0.139 4.139 4 N -0.530 5.530 5 C 0.201 3.799 6 C -0.502 4.502 7 H 0.076 0.924 8 C 0.000 4.000 9 N -0.938 5.938 10 Si 0.955 3.045 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.090 3.910 15 C -0.074 4.074 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.057 4.057 19 C -0.121 4.121 20 C -0.168 4.168 21 C -0.173 4.173 22 C -0.052 4.052 23 C -0.120 4.120 24 C -0.179 4.179 25 C -0.161 4.161 26 C -0.118 4.118 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.065 0.935 34 H -0.014 1.014 35 H -0.008 1.008 36 H 0.260 0.740 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.125 0.875 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 -13.496 -19.175 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 C -0.196 4.196 4 N -0.254 5.254 5 C 0.075 3.925 6 C -0.541 4.541 7 H 0.094 0.906 8 C -0.197 4.197 9 N -0.580 5.580 10 Si 0.781 3.219 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.191 1.191 14 C -0.038 4.038 15 C -0.074 4.074 16 C -0.133 4.133 17 C -0.140 4.140 18 C -0.057 4.057 19 C -0.139 4.139 20 C -0.205 4.205 21 C -0.210 4.210 22 C -0.052 4.052 23 C -0.138 4.138 24 C -0.216 4.216 25 C -0.198 4.198 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.003 0.997 35 H 0.010 0.990 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.143 0.857 47 H 0.106 0.894 48 H 0.130 0.870 49 H 0.134 0.866 50 H 0.104 0.896 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.443 -13.372 -18.982 24.382 hybrid contribution -0.929 0.912 1.178 1.756 sum 6.514 -12.460 -17.803 22.686 Atomic orbital electron populations 1.22326 0.98059 1.00904 1.01846 1.21495 0.92335 0.95428 0.92502 1.22108 1.00489 0.95932 1.01093 1.62287 1.59088 1.00957 1.03072 1.19520 0.92539 0.94101 0.86300 1.21728 1.19575 1.01810 1.10955 0.90644 1.25783 0.95889 1.01979 0.96068 1.70092 1.30521 1.39484 1.17886 0.85585 0.79182 0.80111 0.77033 1.19924 1.21306 1.19087 1.21018 0.95664 0.89398 0.97690 1.19740 0.95225 0.97976 0.94481 1.21032 0.93441 0.98829 1.00028 1.21125 0.99861 0.99915 0.93140 1.19091 0.93913 0.99119 0.93559 1.21033 0.88207 1.04188 1.00472 1.23057 0.98912 0.96253 1.02271 1.23157 0.99365 0.98128 1.00306 1.19052 0.93260 0.98573 0.94354 1.21031 0.92986 1.06617 0.93168 1.23133 0.99088 0.96368 1.03013 1.23065 0.99928 0.93197 1.03638 1.20933 1.00006 1.00328 0.92337 0.94235 0.90847 0.93253 0.90553 0.93943 0.92508 0.91647 0.99669 0.99028 0.93136 0.94254 0.92054 0.86982 0.84778 0.85794 0.86875 0.89821 0.86840 0.88749 0.85730 0.89397 0.86982 0.86618 0.89577 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.29 8.32 71.98 0.60 -5.69 16 2 C 0.09 3.49 2.83 44.92 0.13 3.62 16 3 C -0.14 -5.53 7.69 71.98 0.55 -4.97 16 4 N -0.53 -23.01 4.42 -880.05 -3.89 -26.89 16 5 C 0.20 10.61 4.48 85.56 0.38 10.99 16 6 C -0.50 -27.87 6.68 25.60 0.17 -27.70 16 7 H 0.08 4.11 5.36 -2.91 -0.02 4.09 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 10 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.09 3.39 5.02 85.56 0.43 3.82 16 15 C -0.07 -2.42 4.99 -19.86 -0.10 -2.52 16 16 C -0.11 -3.63 9.73 22.27 0.22 -3.41 16 17 C -0.12 -3.25 9.30 22.27 0.21 -3.05 16 18 C -0.06 -1.36 5.61 -19.87 -0.11 -1.48 16 19 C -0.12 -2.16 5.27 -11.52 -0.06 -2.22 16 20 C -0.17 -2.67 10.16 30.60 0.31 -2.36 16 21 C -0.17 -2.60 9.86 30.62 0.30 -2.30 16 22 C -0.05 -1.30 5.61 -19.86 -0.11 -1.41 16 23 C -0.12 -2.26 5.28 -11.54 -0.06 -2.32 16 24 C -0.18 -3.12 9.86 30.62 0.30 -2.81 16 25 C -0.16 -2.60 10.16 30.62 0.31 -2.29 16 26 C -0.12 -3.36 7.64 22.27 0.17 -3.19 16 27 H 0.04 1.70 6.49 -2.39 -0.02 1.68 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.71 6.26 -2.39 -0.01 1.70 16 30 H 0.08 2.70 6.31 -2.38 -0.02 2.68 16 31 H 0.04 1.75 7.48 -2.39 -0.02 1.73 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 3.01 5.45 -2.39 -0.01 3.00 16 34 H -0.01 -0.80 5.69 -2.39 -0.01 -0.82 16 35 H -0.01 -0.49 7.68 -2.39 -0.02 -0.50 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.04 1.42 6.03 -2.39 -0.01 1.41 16 38 H 0.06 2.42 7.64 -2.39 -0.02 2.40 16 39 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.13 3.01 6.02 -2.91 -0.02 3.00 16 41 H 0.12 1.88 6.86 -2.39 -0.02 1.86 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.50 6.18 -2.39 -0.01 1.48 16 46 H 0.12 2.00 6.85 -2.39 -0.02 1.99 16 47 H 0.09 1.74 6.19 -2.38 -0.01 1.72 16 48 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.12 3.29 5.99 -2.91 -0.02 3.28 16 Total: -1.00 -63.30 386.49 3.44 -59.86 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.92 Total: 25.56 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 4.10 Total: -48.85 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.60 Total: -83.22 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.30 3.44 -59.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308587439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.105 kcal (2) G-P(sol) polarization free energy of solvation -63.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds