Wall clock time and date at job start Tue Mar 31 2020 10:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38363 * 119.85467 * 2 1 4 4 C 1.37951 * 120.14263 * 179.69628 * 3 2 1 5 5 C 1.50697 * 120.07662 * 180.30179 * 4 3 2 6 6 C 1.39556 * 119.85527 * 0.60907 * 4 3 2 7 7 C 1.47816 * 120.14255 * 179.69093 * 6 4 3 8 8 C 1.32567 * 119.99567 * 179.72355 * 7 6 4 9 9 C 1.50706 * 119.99421 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46577 * 125.00152 * 9 8 7 11 11 C 1.46851 * 111.00079 * 66.04774 * 10 9 8 12 12 C 1.53031 * 109.52117 * 174.15596 * 11 10 9 13 13 C 1.53114 * 109.27959 * 59.18263 * 12 11 10 14 14 C 1.53119 * 109.16067 * 302.34003 * 13 12 11 15 15 H 1.09004 * 109.50541 * 297.71846 * 14 13 12 16 16 C 1.50697 * 109.50490 * 177.63594 * 14 13 12 17 17 H 1.08001 * 120.00181 * 239.99804 * 16 14 13 18 18 C 1.37876 * 120.00221 * 60.00208 * 16 14 13 19 19 N 1.31516 * 119.99574 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99945 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47337 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47262 * 299.99553 * 20 18 16 24 24 C 1.46842 * 111.00432 * 301.83503 * 10 9 8 25 25 C 1.39515 * 119.71773 * 359.42069 * 6 4 3 26 26 C 1.37998 * 119.85559 * 0.27612 * 25 6 4 27 27 C 1.50696 * 119.93171 * 179.97438 * 26 25 6 28 28 H 1.09005 * 109.47130 * 269.96687 * 1 2 3 29 29 H 1.08989 * 109.47751 * 29.97350 * 1 2 3 30 30 H 1.09007 * 109.47126 * 149.97753 * 1 2 3 31 31 H 1.08005 * 119.93178 * 0.03219 * 3 2 1 32 32 H 1.09002 * 109.47329 * 270.30844 * 5 4 3 33 33 H 1.09008 * 109.46964 * 30.30758 * 5 4 3 34 34 H 1.09003 * 109.47389 * 150.30229 * 5 4 3 35 35 H 1.08001 * 119.99843 * 359.72931 * 7 6 4 36 36 H 1.07994 * 120.00374 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47318 * 244.99660 * 9 8 7 38 38 H 1.09000 * 109.47161 * 5.00290 * 9 8 7 39 39 H 1.08995 * 109.46131 * 294.17696 * 11 10 9 40 40 H 1.09000 * 109.46243 * 54.14037 * 11 10 9 41 41 H 1.09004 * 109.50039 * 179.12176 * 12 11 10 42 42 H 1.08998 * 109.50772 * 299.23555 * 12 11 10 43 43 H 1.08995 * 109.52797 * 62.24631 * 13 12 11 44 44 H 1.09007 * 109.52351 * 182.37605 * 13 12 11 45 45 H 0.97006 * 119.99743 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.46063 * 305.85824 * 24 10 9 47 47 H 1.09005 * 109.46173 * 65.82506 * 24 10 9 48 48 H 1.08003 * 120.07508 * 180.25457 * 25 6 4 49 49 H 1.08998 * 109.46816 * 89.99889 * 27 26 25 50 50 H 1.09002 * 109.47242 * 209.99987 * 27 26 25 51 51 H 1.08994 * 109.47029 * 329.99826 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 0.0063 5 6 4.3239 2.5148 0.0132 6 6 4.2761 0.0002 -0.0001 7 6 5.7542 0.0002 -0.0003 8 6 6.4170 -1.1479 -0.0009 9 6 7.9241 -1.1477 -0.0005 10 7 8.4134 -1.9429 1.1336 11 6 8.0641 -3.3602 0.9723 12 6 8.7120 -4.1772 2.0924 13 6 8.2165 -3.6611 3.4461 14 6 8.5498 -2.1717 3.5687 15 1 9.6310 -2.0369 3.5376 16 6 8.0140 -1.6420 4.8738 17 1 7.2892 -0.8414 4.8749 18 6 8.4493 -2.1794 6.0666 19 7 9.3324 -3.1540 6.0653 20 14 7.7857 -1.5223 7.6844 21 1 6.3124 -1.7040 7.7255 22 1 8.4069 -2.2631 8.8116 23 1 8.1099 -0.0778 7.8023 24 6 7.9066 -1.4127 2.4058 25 6 3.5756 -1.2064 -0.0007 26 6 2.1956 -1.1997 -0.0007 27 6 1.4373 -2.5019 -0.0019 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3634 0.8901 -0.5133 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6522 2.1333 0.0005 32 1 4.5043 2.8356 -1.0128 33 1 3.7319 3.2696 0.5311 34 1 5.2768 2.3854 0.5263 35 1 6.2941 0.9356 0.0001 36 1 5.8771 -2.0831 -0.0017 37 1 8.2877 -1.5814 -0.9321 38 1 8.2873 -0.1240 0.0899 39 1 6.9812 -3.4749 1.0187 40 1 8.4258 -3.7158 0.0075 41 1 8.4398 -5.2268 1.9813 42 1 9.7957 -4.0740 2.0381 43 1 7.1377 -3.8000 3.5163 44 1 8.7077 -4.2124 4.2481 45 1 9.6383 -3.5323 6.9045 46 1 8.1539 -0.3539 2.4821 47 1 6.8244 -1.5366 2.4455 48 1 4.1122 -2.1437 -0.0015 49 1 1.2546 -2.8168 1.0255 50 1 0.4854 -2.3676 -0.5155 51 1 2.0235 -3.2632 -0.5164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308861510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:51 Heat of formation + Delta-G solvation = 16.556135 kcal Electronic energy + Delta-G solvation = -26111.357951 eV Core-core repulsion = 22781.445305 eV Total energy + Delta-G solvation = -3329.912646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87221 -38.43477 -35.51537 -34.19877 -33.12024 -32.02709 -30.60227 -29.82852 -29.30422 -27.39400 -25.47778 -24.90496 -24.49131 -22.76287 -21.75668 -21.35121 -19.97650 -19.15673 -18.22182 -16.44784 -16.06962 -15.90029 -14.96699 -14.76953 -14.51866 -14.45537 -14.16000 -13.95912 -13.65742 -13.44040 -13.20623 -12.97292 -12.86415 -12.81722 -12.67354 -12.32760 -12.14654 -12.10504 -11.97160 -11.71467 -11.65015 -11.55246 -11.19984 -10.90903 -10.86143 -10.71253 -10.63420 -10.59577 -10.08601 -9.82355 -9.78150 -9.42771 -9.00462 -8.67738 -8.59737 -8.26835 -7.87423 -7.60365 -5.93797 -3.99607 0.95146 1.36944 2.56541 3.34618 3.38948 3.41905 3.83474 4.44238 4.65075 4.66549 4.69712 4.79090 4.84397 4.97539 5.09756 5.19952 5.34274 5.35275 5.36237 5.42439 5.50784 5.55112 5.57576 5.60404 5.69092 5.70109 5.73991 5.76260 5.86699 5.86823 6.05904 6.10296 6.15104 6.16936 6.28721 6.33119 6.48967 6.50961 6.55934 6.60235 6.72081 6.75611 6.80730 6.91622 7.01915 7.03976 7.25763 7.43411 7.69451 7.78976 7.85278 8.12615 8.21452 8.52711 9.04284 9.64410 11.12193 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.003497 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.534544 B = 8005.819343 C = 8770.501759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.081 4.081 5 C -0.116 4.116 6 C -0.047 4.047 7 C -0.126 4.126 8 C -0.161 4.161 9 C 0.081 3.919 10 N -0.531 5.531 11 C 0.061 3.939 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.055 3.945 15 H 0.033 0.967 16 C -0.513 4.513 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.069 3.931 25 C -0.108 4.108 26 C -0.091 4.091 27 C -0.116 4.116 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.090 0.910 45 H 0.260 0.740 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.122 0.878 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 4.863 -15.500 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.047 4.047 7 C -0.145 4.145 8 C -0.181 4.181 9 C -0.047 4.047 10 N -0.253 5.253 11 C -0.067 4.067 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.036 3.964 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.070 0.930 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.058 4.058 25 C -0.126 4.126 26 C -0.091 4.091 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.140 0.860 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.616 4.768 -15.350 20.433 hybrid contribution -1.315 0.247 0.984 1.662 sum -13.932 5.015 -14.365 20.630 Atomic orbital electron populations 1.20839 0.91534 1.02540 1.02244 1.19729 0.95761 0.92600 1.01069 1.20770 0.93386 0.97288 1.02118 1.19937 0.93508 0.94709 0.99911 1.20815 1.00494 0.93770 1.02142 1.18929 0.93268 0.92437 1.00067 1.21647 0.91490 0.98429 1.02913 1.24217 0.98448 0.97979 0.97452 1.21370 0.88757 0.99412 0.95205 1.62332 1.58621 1.02063 1.02323 1.22038 0.97327 0.88731 0.98594 1.21683 1.00591 0.96762 0.96550 1.21647 0.98430 1.00103 0.94663 1.18659 0.96529 0.90854 0.90357 0.94898 1.21116 1.24699 1.18649 0.90762 0.92976 1.24919 0.94970 0.95023 0.98857 1.69885 1.30973 1.25540 1.26403 0.86714 0.79131 0.79080 0.83392 1.20418 1.21302 1.20292 1.22280 0.96542 0.98635 0.88294 1.21149 0.93330 0.97613 1.00502 1.19630 0.93528 0.94846 1.01050 1.20849 0.99854 0.94143 1.02440 0.91267 0.91857 0.91286 0.86270 0.91295 0.91705 0.90958 0.86242 0.87287 0.90487 0.90575 0.95807 0.92486 0.93604 0.92097 0.95282 0.89137 0.93052 0.92542 0.95895 0.86004 0.91113 0.91317 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.60 36.00 0.35 -0.63 16 2 C -0.09 -1.06 5.88 -104.54 -0.62 -1.67 16 3 C -0.12 -1.37 9.34 -39.64 -0.37 -1.74 16 4 C -0.08 -1.02 5.91 -104.24 -0.62 -1.63 16 5 C -0.12 -1.19 9.52 36.00 0.34 -0.85 16 6 C -0.05 -0.66 5.87 -105.01 -0.62 -1.27 16 7 C -0.13 -1.74 8.93 -37.57 -0.34 -2.07 16 8 C -0.16 -2.32 7.08 -36.21 -0.26 -2.58 16 9 C 0.08 1.20 5.82 -4.97 -0.03 1.17 16 10 N -0.53 -9.82 4.86 -236.11 -1.15 -10.97 16 11 C 0.06 1.07 5.13 -3.83 -0.02 1.05 16 12 C -0.12 -2.33 6.09 -26.66 -0.16 -2.49 16 13 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 14 C 0.05 1.39 2.26 -91.69 -0.21 1.19 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -14.33 8.57 -34.44 -0.30 -14.63 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.64 11.35 55.43 0.63 -25.02 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.07 1.50 4.24 -3.84 -0.02 1.48 16 25 C -0.11 -1.48 9.05 -39.19 -0.35 -1.83 16 26 C -0.09 -1.11 5.87 -104.68 -0.61 -1.73 16 27 C -0.12 -1.13 9.60 36.00 0.35 -0.78 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.46 8.08 -51.94 -0.42 0.04 16 30 H 0.07 0.51 5.93 -51.92 -0.31 0.20 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.09 -51.92 -0.42 0.16 16 34 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 35 H 0.12 1.51 6.18 -52.49 -0.32 1.18 16 36 H 0.11 1.59 5.06 -52.49 -0.27 1.32 16 37 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.08 1.08 7.81 -51.93 -0.41 0.68 16 39 H 0.02 0.42 6.89 -51.93 -0.36 0.06 16 40 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.42 6.15 -51.92 -0.32 2.11 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 47 H 0.02 0.51 7.26 -51.93 -0.38 0.14 16 48 H 0.12 1.61 6.17 -52.48 -0.32 1.29 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 51 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -29.59 389.46 -12.13 -41.72 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.76 Total: 1.94 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -3.70 Total: -30.12 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.52 Total: -35.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.59 -12.13 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308861510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.279 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds