Wall clock time and date at job start Tue Mar 31 2020 10:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38363 * 119.85467 * 2 1 4 4 C 1.37951 * 120.14263 * 179.69628 * 3 2 1 5 5 C 1.50697 * 120.07662 * 180.30179 * 4 3 2 6 6 C 1.39556 * 119.85527 * 0.60907 * 4 3 2 7 7 C 1.47816 * 120.14255 * 179.69093 * 6 4 3 8 8 C 1.32567 * 119.99567 * 179.72355 * 7 6 4 9 9 C 1.50706 * 119.99421 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46577 * 125.00152 * 9 8 7 11 11 C 1.46851 * 111.00079 * 66.04774 * 10 9 8 12 12 C 1.53031 * 109.52117 * 174.15596 * 11 10 9 13 13 C 1.53114 * 109.27959 * 59.18263 * 12 11 10 14 14 C 1.53119 * 109.16067 * 302.34003 * 13 12 11 15 15 H 1.09004 * 109.50541 * 297.71846 * 14 13 12 16 16 C 1.50697 * 109.50490 * 177.63594 * 14 13 12 17 17 H 1.08001 * 120.00181 * 239.99804 * 16 14 13 18 18 C 1.37876 * 120.00221 * 60.00208 * 16 14 13 19 19 N 1.31516 * 119.99574 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99945 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47337 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47262 * 299.99553 * 20 18 16 24 24 C 1.46842 * 111.00432 * 301.83503 * 10 9 8 25 25 C 1.39515 * 119.71773 * 359.42069 * 6 4 3 26 26 C 1.37998 * 119.85559 * 0.27612 * 25 6 4 27 27 C 1.50696 * 119.93171 * 179.97438 * 26 25 6 28 28 H 1.09005 * 109.47130 * 269.96687 * 1 2 3 29 29 H 1.08989 * 109.47751 * 29.97350 * 1 2 3 30 30 H 1.09007 * 109.47126 * 149.97753 * 1 2 3 31 31 H 1.08005 * 119.93178 * 0.03219 * 3 2 1 32 32 H 1.09002 * 109.47329 * 270.30844 * 5 4 3 33 33 H 1.09008 * 109.46964 * 30.30758 * 5 4 3 34 34 H 1.09003 * 109.47389 * 150.30229 * 5 4 3 35 35 H 1.08001 * 119.99843 * 359.72931 * 7 6 4 36 36 H 1.07994 * 120.00374 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47318 * 244.99660 * 9 8 7 38 38 H 1.09000 * 109.47161 * 5.00290 * 9 8 7 39 39 H 1.08995 * 109.46131 * 294.17696 * 11 10 9 40 40 H 1.09000 * 109.46243 * 54.14037 * 11 10 9 41 41 H 1.09004 * 109.50039 * 179.12176 * 12 11 10 42 42 H 1.08998 * 109.50772 * 299.23555 * 12 11 10 43 43 H 1.08995 * 109.52797 * 62.24631 * 13 12 11 44 44 H 1.09007 * 109.52351 * 182.37605 * 13 12 11 45 45 H 0.97006 * 119.99743 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.46063 * 305.85824 * 24 10 9 47 47 H 1.09005 * 109.46173 * 65.82506 * 24 10 9 48 48 H 1.08003 * 120.07508 * 180.25457 * 25 6 4 49 49 H 1.08998 * 109.46816 * 89.99889 * 27 26 25 50 50 H 1.09002 * 109.47242 * 209.99987 * 27 26 25 51 51 H 1.08994 * 109.47029 * 329.99826 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 0.0063 5 6 4.3239 2.5148 0.0132 6 6 4.2761 0.0002 -0.0001 7 6 5.7542 0.0002 -0.0003 8 6 6.4170 -1.1479 -0.0009 9 6 7.9241 -1.1477 -0.0005 10 7 8.4134 -1.9429 1.1336 11 6 8.0641 -3.3602 0.9723 12 6 8.7120 -4.1772 2.0924 13 6 8.2165 -3.6611 3.4461 14 6 8.5498 -2.1717 3.5687 15 1 9.6310 -2.0369 3.5376 16 6 8.0140 -1.6420 4.8738 17 1 7.2892 -0.8414 4.8749 18 6 8.4493 -2.1794 6.0666 19 7 9.3324 -3.1540 6.0653 20 14 7.7857 -1.5223 7.6844 21 1 6.3124 -1.7040 7.7255 22 1 8.4069 -2.2631 8.8116 23 1 8.1099 -0.0778 7.8023 24 6 7.9066 -1.4127 2.4058 25 6 3.5756 -1.2064 -0.0007 26 6 2.1956 -1.1997 -0.0007 27 6 1.4373 -2.5019 -0.0019 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3634 0.8901 -0.5133 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6522 2.1333 0.0005 32 1 4.5043 2.8356 -1.0128 33 1 3.7319 3.2696 0.5311 34 1 5.2768 2.3854 0.5263 35 1 6.2941 0.9356 0.0001 36 1 5.8771 -2.0831 -0.0017 37 1 8.2877 -1.5814 -0.9321 38 1 8.2873 -0.1240 0.0899 39 1 6.9812 -3.4749 1.0187 40 1 8.4258 -3.7158 0.0075 41 1 8.4398 -5.2268 1.9813 42 1 9.7957 -4.0740 2.0381 43 1 7.1377 -3.8000 3.5163 44 1 8.7077 -4.2124 4.2481 45 1 9.6383 -3.5323 6.9045 46 1 8.1539 -0.3539 2.4821 47 1 6.8244 -1.5366 2.4455 48 1 4.1122 -2.1437 -0.0015 49 1 1.2546 -2.8168 1.0255 50 1 0.4854 -2.3676 -0.5155 51 1 2.0235 -3.2632 -0.5164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308861510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:50 Heat of formation + Delta-G solvation = 3.101567 kcal Electronic energy + Delta-G solvation = -26111.941385 eV Core-core repulsion = 22781.445305 eV Total energy + Delta-G solvation = -3330.496080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80052 -39.95734 -36.72197 -35.55691 -34.48559 -33.44940 -31.77182 -31.68381 -30.13596 -28.41597 -26.95569 -26.50362 -25.52859 -23.79457 -23.30085 -22.95185 -21.16938 -20.29480 -19.71288 -18.44591 -17.16301 -16.87965 -16.77202 -16.04586 -15.82279 -15.59557 -15.32091 -15.16122 -14.92895 -14.69292 -14.27184 -14.24929 -14.16808 -13.98690 -13.71839 -13.61830 -13.46996 -13.18203 -12.96528 -12.89953 -12.86457 -12.72378 -12.61259 -12.53567 -12.42277 -12.25427 -11.85805 -11.75092 -11.70705 -11.57847 -11.37899 -10.96968 -10.71643 -10.66707 -10.38213 -9.52784 -9.16657 -8.78729 -8.08687 -6.22761 -0.02993 0.43964 1.39387 1.40705 1.48444 1.54555 2.41744 2.88034 3.17854 3.22175 3.71614 3.76996 3.92528 3.96691 4.10476 4.19455 4.21328 4.24492 4.29518 4.36896 4.52613 4.55604 4.63161 4.65371 4.67555 4.69490 4.77967 4.79689 4.80611 4.83772 4.89184 4.92304 4.95947 4.99159 5.03392 5.11636 5.13484 5.18409 5.25069 5.32734 5.38768 5.42305 5.51864 5.54089 5.62404 5.66832 5.72970 5.88494 5.98199 6.12515 6.14110 6.21532 6.36913 6.46249 6.89424 7.44802 8.95750 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.003497 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.534544 B = 8005.819343 C = 8770.501759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.091 4.091 5 C -0.114 4.114 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.175 4.175 9 C 0.085 3.915 10 N -0.541 5.541 11 C 0.065 3.935 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.053 3.947 15 H -0.004 1.004 16 C -0.538 4.538 17 H 0.047 0.953 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.090 3.910 25 C -0.126 4.126 26 C -0.106 4.106 27 C -0.115 4.115 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.025 0.975 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.261 0.739 46 H 0.050 0.950 47 H 0.012 0.988 48 H 0.117 0.883 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 5.648 -16.689 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.076 4.076 7 C -0.138 4.138 8 C -0.194 4.194 9 C -0.042 4.042 10 N -0.263 5.263 11 C -0.063 4.063 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.034 3.966 15 H 0.015 0.985 16 C -0.576 4.576 17 H 0.065 0.935 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.776 3.224 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.038 4.038 25 C -0.144 4.144 26 C -0.106 4.106 27 C -0.171 4.171 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.031 0.969 48 H 0.135 0.865 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.406 5.556 -16.558 22.640 hybrid contribution -0.806 0.033 1.329 1.555 sum -15.212 5.588 -15.229 22.238 Atomic orbital electron populations 1.20899 0.89248 1.03898 1.02955 1.20166 0.97545 0.92248 0.99598 1.21123 0.93255 0.98446 1.01637 1.20272 0.94296 0.95126 0.99393 1.20848 1.00058 0.93056 1.03114 1.19114 0.93394 0.93259 1.01811 1.21816 0.91861 0.98656 1.01484 1.24083 0.98039 0.98075 0.99221 1.21411 0.89097 0.99280 0.94460 1.62254 1.59038 1.02990 1.02042 1.22040 0.97305 0.87842 0.99077 1.21601 1.00065 0.98488 0.94810 1.21449 0.97309 0.98967 0.96419 1.18584 0.94325 0.92369 0.91329 0.98540 1.21475 1.24890 1.18822 0.92420 0.93520 1.25686 0.95191 0.95219 1.02172 1.70025 1.31797 1.26359 1.27176 0.85727 0.78583 0.78702 0.79346 1.19933 1.20609 1.19587 1.21851 0.95330 0.97690 0.88903 1.21300 0.94284 0.97498 1.01349 1.19976 0.93297 0.96391 1.00929 1.20884 1.00507 0.93007 1.02710 0.90709 0.90371 0.90135 0.84031 0.89910 0.90366 0.91708 0.85334 0.87724 0.88095 0.90080 0.95646 0.89078 0.91238 0.92939 0.96351 0.92368 0.93012 0.93170 0.96949 0.86526 0.91154 0.89365 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.60 71.23 0.68 -0.94 16 2 C -0.10 -2.04 5.88 -19.81 -0.12 -2.16 16 3 C -0.13 -2.74 9.34 22.23 0.21 -2.54 16 4 C -0.09 -2.20 5.91 -19.62 -0.12 -2.32 16 5 C -0.11 -2.18 9.52 71.24 0.68 -1.50 16 6 C -0.08 -2.10 5.87 -20.12 -0.12 -2.22 16 7 C -0.12 -3.25 8.93 23.65 0.21 -3.04 16 8 C -0.17 -4.92 7.08 24.54 0.17 -4.75 16 9 C 0.08 2.39 5.82 85.56 0.50 2.89 16 10 N -0.54 -19.65 4.86 -900.92 -4.38 -24.03 16 11 C 0.06 2.19 5.13 86.32 0.44 2.64 16 12 C -0.11 -4.38 6.09 30.64 0.19 -4.19 16 13 C -0.10 -5.11 5.02 30.67 0.15 -4.96 16 14 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16 15 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C -0.54 -30.92 8.57 25.60 0.22 -30.70 16 17 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 18 C 0.02 0.93 5.30 84.65 0.45 1.37 16 19 N -0.91 -54.21 11.35 21.45 0.24 -53.97 16 20 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 C 0.09 3.96 4.24 86.33 0.37 4.33 16 25 C -0.13 -3.47 9.05 22.52 0.20 -3.26 16 26 C -0.11 -2.52 5.87 -19.90 -0.12 -2.63 16 27 C -0.11 -2.08 9.60 71.23 0.68 -1.40 16 28 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.08 0.96 5.93 -2.38 -0.01 0.94 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.26 8.09 -2.38 -0.02 1.24 16 34 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 35 H 0.13 3.17 6.18 -2.91 -0.02 3.15 16 36 H 0.10 3.04 5.06 -2.91 -0.01 3.02 16 37 H 0.10 2.38 8.06 -2.39 -0.02 2.36 16 38 H 0.08 2.20 7.81 -2.39 -0.02 2.18 16 39 H 0.03 0.86 6.89 -2.39 -0.02 0.85 16 40 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 41 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 3.24 6.15 -2.38 -0.01 3.23 16 45 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 46 H 0.05 2.22 8.12 -2.38 -0.02 2.21 16 47 H 0.01 0.57 7.26 -2.38 -0.02 0.55 16 48 H 0.12 3.17 6.17 -2.91 -0.02 3.15 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.09 1.21 5.93 -2.39 -0.01 1.20 16 51 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 Total: -1.00 -65.58 389.46 3.45 -62.13 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.89 Total: 21.63 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 4.66 Total: -52.63 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -4.13 Total: -78.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.58 3.45 -62.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308861510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.235 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds