Wall clock time and date at job start Tue Mar 31 2020 10:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38368 * 119.92998 * 2 1 4 4 C 1.38327 * 120.28586 * 180.02562 * 3 2 1 5 5 C 1.37990 * 120.14047 * 0.02823 * 4 3 2 6 6 C 1.39514 * 119.85896 * 0.02562 * 5 4 3 7 7 C 1.47808 * 120.14171 * 180.02562 * 6 5 4 8 8 C 1.31472 * 118.66775 * 104.99470 * 7 6 5 9 9 C 1.50164 * 123.06416 * 180.31502 * 8 7 6 10 10 N 1.46837 * 110.25058 * 342.94630 * 9 8 7 11 11 C 1.46904 * 111.00132 * 174.60405 * 10 9 8 12 12 C 1.52996 * 109.46858 * 66.04546 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.53008 * 109.46928 * 65.00212 * 12 11 10 15 15 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 12 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47223 * 110.26184 * 51.17699 * 10 9 8 25 25 C 1.50335 * 118.65548 * 284.97262 * 7 6 5 26 26 C 1.37950 * 119.92932 * 180.33374 * 2 1 3 27 27 C 1.50705 * 120.07398 * 359.96775 * 26 2 1 28 28 H 1.08995 * 109.47157 * 89.99373 * 1 2 3 29 29 H 1.09002 * 109.46862 * 209.99691 * 1 2 3 30 30 H 1.09002 * 109.46932 * 329.99335 * 1 2 3 31 31 H 1.07998 * 119.85457 * 0.03149 * 3 2 1 32 32 H 1.08001 * 119.92427 * 179.97438 * 4 3 2 33 33 H 1.08005 * 120.06827 * 180.02562 * 5 4 3 34 34 H 1.08002 * 118.46754 * 0.34396 * 8 7 6 35 35 H 1.09000 * 109.34515 * 222.71064 * 9 8 7 36 36 H 1.08998 * 109.21417 * 103.10221 * 9 8 7 37 37 H 1.08997 * 109.46933 * 306.04707 * 11 10 9 38 38 H 1.08996 * 109.47325 * 186.04849 * 11 10 9 39 39 H 1.08999 * 109.46998 * 59.99991 * 14 12 11 40 40 H 1.09004 * 109.46896 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.46930 * 299.99738 * 14 12 11 42 42 H 1.09004 * 109.47066 * 55.00326 * 15 12 11 43 43 H 1.08994 * 109.47405 * 295.00156 * 15 12 11 44 44 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.62355 * 50.42140 * 24 10 9 46 46 H 1.08996 * 109.62474 * 170.99534 * 24 10 9 47 47 H 1.08997 * 109.43770 * 283.53860 * 25 7 6 48 48 H 1.09004 * 109.43562 * 43.44865 * 25 7 6 49 49 H 1.08999 * 109.46929 * 270.30685 * 27 26 2 50 50 H 1.08995 * 109.46708 * 30.30475 * 27 26 2 51 51 H 1.08996 * 109.47121 * 150.30348 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5806 1.2077 -0.0005 5 6 4.2809 0.0187 -0.0017 6 6 3.5908 -1.1938 -0.0028 7 6 4.3346 -2.4711 -0.0034 8 6 4.3937 -3.1671 1.1104 9 6 5.1271 -4.4726 1.2227 10 7 5.3876 -5.0258 -0.1123 11 6 6.2149 -6.2368 -0.0283 12 6 5.4288 -7.3435 0.6773 13 1 5.0853 -6.9836 1.6471 14 6 4.2220 -7.7363 -0.1775 15 6 6.3313 -8.5628 0.8762 16 6 5.5969 -9.6058 1.6786 17 1 4.5872 -9.4181 2.0129 18 6 6.2117 -10.8025 1.9807 19 7 7.4411 -11.0313 1.5733 20 14 5.2986 -12.0984 2.9687 21 1 3.9405 -11.5998 3.3033 22 1 5.1849 -13.3431 2.1667 23 1 6.0444 -12.3828 4.2210 24 6 6.0228 -4.0113 -0.9695 25 6 4.9924 -2.9216 -1.2779 26 6 2.1953 -1.1955 -0.0070 27 6 1.4418 -2.5007 -0.0138 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6539 2.1324 0.0005 32 1 4.1136 2.1471 -0.0009 33 1 5.3609 0.0268 -0.0017 34 1 3.8908 -2.7822 1.9852 35 1 4.5236 -5.1779 1.7941 36 1 6.0743 -4.3089 1.7366 37 1 7.1216 -6.0188 0.5360 38 1 6.4822 -6.5647 -1.0328 39 1 4.5655 -8.0962 -1.1473 40 1 3.6622 -8.5251 0.3249 41 1 3.5791 -6.8676 -0.3193 42 1 7.2340 -8.2636 1.4090 43 1 6.6028 -8.9762 -0.0950 44 1 7.8737 -11.8730 1.7862 45 1 6.8747 -3.5738 -0.4491 46 1 6.3558 -4.4737 -1.8987 47 1 4.2366 -3.3184 -1.9556 48 1 5.4917 -2.0741 -1.7477 49 1 1.2559 -2.8183 1.0122 50 1 0.4916 -2.3688 -0.5312 51 1 2.0330 -3.2588 -0.5274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308974230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:41 Heat of formation + Delta-G solvation = 13.622385 kcal Electronic energy + Delta-G solvation = -25791.805383 eV Core-core repulsion = 22461.765520 eV Total energy + Delta-G solvation = -3330.039863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11602 -38.71011 -35.76510 -33.78845 -33.49812 -32.13112 -30.72334 -30.64867 -27.87125 -26.86639 -26.54251 -25.83441 -24.10018 -23.20127 -22.16945 -21.09897 -20.85041 -18.85052 -17.67167 -16.68187 -16.25901 -15.89225 -15.67004 -15.17508 -14.59457 -14.41353 -14.25330 -14.18207 -13.92348 -13.42614 -13.24051 -13.13743 -12.96934 -12.70461 -12.65539 -12.37130 -12.25816 -12.21528 -12.06606 -11.86505 -11.53897 -11.44602 -11.22365 -11.08282 -11.00233 -10.83861 -10.69683 -10.41795 -10.25381 -10.17091 -9.59876 -9.10693 -8.98773 -8.91763 -8.70548 -8.55016 -8.31417 -7.99425 -5.96230 -3.96963 1.12180 1.21410 2.15061 3.32911 3.40568 3.44661 3.53571 4.16327 4.47946 4.49985 4.62410 4.71729 4.84040 4.91443 5.06226 5.09002 5.24954 5.28877 5.34390 5.39729 5.40523 5.43211 5.52410 5.55471 5.57120 5.61348 5.67861 5.75736 5.79505 5.84330 5.90442 5.97653 6.03398 6.11742 6.15803 6.19640 6.26062 6.34693 6.41767 6.46032 6.53333 6.61769 6.72819 6.83361 6.91199 7.05322 7.17837 7.23819 7.37897 7.48066 7.71806 7.87786 8.04410 8.48707 9.09709 9.66340 11.15372 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.002470 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.297572 B =11333.243628 C =12002.902460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.042 4.042 7 C -0.086 4.086 8 C -0.131 4.131 9 C 0.081 3.919 10 N -0.528 5.528 11 C 0.059 3.941 12 C -0.080 4.080 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.051 3.949 25 C -0.068 4.068 26 C -0.072 4.072 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.012 0.988 43 H 0.016 0.984 44 H 0.258 0.742 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 24.777 -4.947 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.131 4.131 6 C -0.042 4.042 7 C -0.087 4.087 8 C -0.149 4.149 9 C -0.046 4.046 10 N -0.252 5.252 11 C -0.068 4.068 12 C -0.099 4.099 13 H 0.073 0.927 14 C -0.179 4.179 15 C -0.011 4.011 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.077 4.077 25 C -0.105 4.105 26 C -0.072 4.072 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.796 24.506 -5.160 26.891 hybrid contribution 0.500 -0.446 0.983 1.190 sum -9.295 24.060 -4.177 26.129 Atomic orbital electron populations 1.20818 0.91343 1.02772 1.02255 1.19709 0.95927 0.92574 1.00732 1.21015 0.94253 0.97248 1.01534 1.21004 0.94207 0.97831 1.01138 1.21197 0.99682 0.91594 1.00581 1.18934 0.92284 0.93021 0.99943 1.19596 0.99886 0.93336 0.95856 1.22552 0.99579 0.95473 0.97344 1.21010 0.98701 0.93581 0.91304 1.62456 1.46731 1.05050 1.10950 1.22371 0.93971 0.89548 1.00890 1.21207 0.96475 0.95078 0.97147 0.92652 1.21576 0.97705 0.99735 0.98918 1.19135 0.94142 0.90982 0.96861 1.21272 1.00190 1.00170 1.33197 0.92537 1.25026 0.94929 0.98432 0.96240 1.69980 1.12465 1.24603 1.46659 0.86586 0.80004 0.81802 0.79917 1.19749 1.21105 1.21141 1.22175 0.94858 0.92869 0.97834 1.20421 0.97972 0.97299 0.94855 1.19917 0.92654 0.95019 0.99561 1.20848 0.99722 0.94275 1.02503 0.91256 0.91212 0.91743 0.86412 0.86260 0.86192 0.87459 0.88852 0.93765 0.95314 0.91176 0.94259 0.92855 0.93900 0.96991 0.96598 0.93193 0.94895 0.90499 0.90264 0.91273 0.91178 0.91689 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.18 36.01 0.33 -0.51 16 2 C -0.09 -0.86 5.87 -104.68 -0.61 -1.48 16 3 C -0.12 -1.11 9.69 -39.50 -0.38 -1.49 16 4 C -0.12 -1.14 10.03 -39.64 -0.40 -1.53 16 5 C -0.11 -1.16 9.79 -39.20 -0.38 -1.54 16 6 C -0.04 -0.47 5.11 -105.02 -0.54 -1.01 16 7 C -0.09 -1.02 3.87 -102.72 -0.40 -1.41 16 8 C -0.13 -1.63 9.25 -36.40 -0.34 -1.96 16 9 C 0.08 1.14 5.27 -5.27 -0.03 1.12 16 10 N -0.53 -7.81 4.16 -236.11 -0.98 -8.79 16 11 C 0.06 1.02 4.34 -3.82 -0.02 1.01 16 12 C -0.08 -1.63 2.25 -90.62 -0.20 -1.83 16 13 H 0.06 1.14 6.44 -51.93 -0.33 0.80 16 14 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 15 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 16 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 17 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.05 0.64 5.59 -3.59 -0.02 0.62 16 25 C -0.07 -0.77 6.03 -28.01 -0.17 -0.94 16 26 C -0.07 -0.77 5.91 -104.23 -0.62 -1.39 16 27 C -0.12 -1.17 8.52 36.01 0.31 -0.86 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.49 6.72 -51.93 -0.35 0.14 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.11 1.27 7.98 -52.49 -0.42 0.85 16 35 H 0.09 1.39 6.61 -51.93 -0.34 1.05 16 36 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 41 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 46 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 51 H 0.08 0.86 7.08 -51.93 -0.37 0.49 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -30.07 397.11 -12.09 -42.16 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -9.16 Total: -1.96 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.65 Total: -27.82 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.25 Total: -35.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.07 -12.09 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308974230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.779 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds