Wall clock time and date at job start Tue Mar 31 2020 10:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38369 * 119.92878 * 2 1 4 4 C 1.38321 * 120.28294 * 180.02562 * 3 2 1 5 5 C 1.37990 * 120.14543 * 0.02562 * 4 3 2 6 6 C 1.39512 * 119.85721 * 359.97438 * 5 4 3 7 7 C 1.47810 * 120.14457 * 180.02562 * 6 5 4 8 8 C 1.31474 * 118.66299 * 104.99418 * 7 6 5 9 9 C 1.50165 * 123.05792 * 180.36007 * 8 7 6 10 10 N 1.46842 * 110.25498 * 342.90837 * 9 8 7 11 11 C 1.46896 * 111.00204 * 174.60444 * 10 9 8 12 12 C 1.53001 * 109.47129 * 164.07411 * 11 10 9 13 13 H 1.09008 * 109.46597 * 56.00707 * 12 11 10 14 14 C 1.52997 * 109.47492 * 296.01172 * 12 11 10 15 15 C 1.53005 * 109.47228 * 176.00630 * 12 11 10 16 16 C 1.50693 * 109.47072 * 185.00286 * 15 12 11 17 17 H 1.08002 * 120.00420 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00144 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99644 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47120 * 89.99575 * 20 18 16 22 22 H 1.48496 * 109.47008 * 209.99611 * 20 18 16 23 23 H 1.48506 * 109.47213 * 329.99634 * 20 18 16 24 24 C 1.47216 * 110.26286 * 51.17480 * 10 9 8 25 25 C 1.50333 * 118.65783 * 284.97995 * 7 6 5 26 26 C 1.37960 * 119.92891 * 180.32913 * 2 1 3 27 27 C 1.50701 * 120.07100 * 359.96902 * 26 2 1 28 28 H 1.09006 * 109.47548 * 90.00127 * 1 2 3 29 29 H 1.09005 * 109.46894 * 209.99681 * 1 2 3 30 30 H 1.09000 * 109.47149 * 329.99796 * 1 2 3 31 31 H 1.07996 * 119.85413 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.91964 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.07029 * 180.02562 * 5 4 3 34 34 H 1.07998 * 118.47303 * 0.34684 * 8 7 6 35 35 H 1.08999 * 109.34765 * 222.66602 * 9 8 7 36 36 H 1.08999 * 109.33985 * 103.14518 * 9 8 7 37 37 H 1.09003 * 109.47091 * 284.07964 * 11 10 9 38 38 H 1.09003 * 109.47277 * 44.08021 * 11 10 9 39 39 H 1.09006 * 109.46901 * 304.82736 * 14 12 11 40 40 H 1.08998 * 109.47435 * 64.82115 * 14 12 11 41 41 H 1.08993 * 109.47478 * 184.82829 * 14 12 11 42 42 H 1.09000 * 109.47073 * 305.00334 * 15 12 11 43 43 H 1.08993 * 109.46824 * 65.00316 * 15 12 11 44 44 H 0.97004 * 120.00031 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.62916 * 50.42272 * 24 10 9 46 46 H 1.08999 * 109.62604 * 171.00308 * 24 10 9 47 47 H 1.09004 * 109.43307 * 283.53944 * 25 7 6 48 48 H 1.09006 * 109.43402 * 43.44194 * 25 7 6 49 49 H 1.08994 * 109.47432 * 270.30185 * 27 26 2 50 50 H 1.09001 * 109.46869 * 30.30647 * 27 26 2 51 51 H 1.08998 * 109.46784 * 150.30072 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5805 1.2077 -0.0005 5 6 4.2809 0.0187 -0.0016 6 6 3.5909 -1.1938 -0.0016 7 6 4.3346 -2.4711 -0.0022 8 6 4.3945 -3.1665 1.1120 9 6 5.1288 -4.4715 1.2246 10 7 5.3884 -5.0256 -0.1102 11 6 6.2165 -6.2360 -0.0259 12 6 6.1397 -6.9997 -1.3494 13 1 6.4378 -6.3421 -2.1661 14 6 4.7052 -7.4797 -1.5789 15 6 7.0791 -8.2063 -1.2973 16 6 7.0968 -8.8875 -2.6414 17 1 6.4983 -8.4986 -3.4519 18 6 7.8779 -10.0068 -2.8368 19 7 7.8930 -10.6016 -4.0096 20 14 8.9137 -10.6790 -1.4351 21 1 8.1211 -11.6713 -0.6656 22 1 10.1267 -11.3347 -1.9863 23 1 9.3168 -9.5654 -0.5391 24 6 6.0221 -4.0115 -0.9688 25 6 4.9916 -2.9223 -1.2769 26 6 2.1953 -1.1956 -0.0069 27 6 1.4418 -2.5007 -0.0137 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6538 2.1324 0.0004 32 1 4.1135 2.1472 -0.0001 33 1 5.3608 0.0268 -0.0016 34 1 3.8923 -2.7812 1.9870 35 1 4.5263 -5.1766 1.7972 36 1 6.0762 -4.3094 1.7386 37 1 7.2510 -5.9553 0.1723 38 1 5.8512 -6.8707 0.7815 39 1 4.3771 -8.0671 -0.7212 40 1 4.0490 -6.6181 -1.7015 41 1 4.6675 -8.0959 -2.4771 42 1 8.0858 -7.8724 -1.0459 43 1 6.7288 -8.9069 -0.5394 44 1 8.4428 -11.3888 -4.1471 45 1 6.8743 -3.5730 -0.4496 46 1 6.3545 -4.4745 -1.8980 47 1 4.2352 -3.3193 -1.9539 48 1 5.4905 -2.0749 -1.7474 49 1 1.2559 -2.8183 1.0123 50 1 0.4915 -2.3689 -0.5311 51 1 2.0330 -3.2588 -0.5272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308974231.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:43 Heat of formation + Delta-G solvation = 17.200896 kcal Electronic energy + Delta-G solvation = -25802.610182 eV Core-core repulsion = 22472.725494 eV Total energy + Delta-G solvation = -3329.884687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15031 -38.75957 -35.85505 -33.84773 -33.52374 -32.11925 -30.96857 -30.60034 -27.98322 -27.38333 -26.58350 -25.87483 -23.85282 -23.45220 -21.91537 -21.09907 -20.87101 -18.88888 -17.69667 -16.84352 -16.52464 -15.96062 -15.72148 -15.18322 -14.70043 -14.48262 -14.32822 -14.04394 -13.84991 -13.52487 -13.34195 -13.16715 -13.03911 -12.86829 -12.72028 -12.47446 -12.31976 -12.23571 -12.00290 -11.98540 -11.77972 -11.56361 -11.37596 -11.11117 -10.93713 -10.92929 -10.62884 -10.55843 -10.36698 -9.71712 -9.65790 -9.36443 -9.03382 -9.03265 -8.73178 -8.59393 -8.49368 -8.06328 -5.99746 -3.96307 1.09295 1.18906 2.08515 3.32743 3.40140 3.43546 3.50966 4.09204 4.43677 4.48696 4.59982 4.69026 4.81886 4.89758 5.03187 5.05623 5.20095 5.24492 5.32297 5.33788 5.39159 5.40645 5.48132 5.51530 5.52714 5.53291 5.58244 5.67117 5.71875 5.81306 5.85575 5.93199 6.01814 6.07061 6.10541 6.14998 6.20441 6.30572 6.33302 6.39463 6.47162 6.54219 6.65225 6.78291 6.86276 6.88854 7.07390 7.19503 7.27006 7.32908 7.41202 7.53314 7.85664 8.60257 9.06420 9.63325 11.13706 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.002417 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.705023 B =11582.815027 C =11790.940649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.044 4.044 7 C -0.077 4.077 8 C -0.140 4.140 9 C 0.084 3.916 10 N -0.527 5.527 11 C 0.056 3.944 12 C -0.069 4.069 13 H 0.061 0.939 14 C -0.123 4.123 15 C -0.010 4.010 16 C -0.511 4.511 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.050 3.950 25 C -0.071 4.071 26 C -0.072 4.072 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 23.486 11.197 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.130 4.130 6 C -0.044 4.044 7 C -0.077 4.077 8 C -0.158 4.158 9 C -0.044 4.044 10 N -0.251 5.251 11 C -0.071 4.071 12 C -0.088 4.088 13 H 0.079 0.921 14 C -0.181 4.181 15 C -0.048 4.048 16 C -0.549 4.549 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.192 1.192 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.072 4.072 27 C -0.173 4.173 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.267 23.194 10.898 28.411 hybrid contribution 1.467 -0.122 1.111 1.844 sum -10.800 23.073 12.009 28.164 Atomic orbital electron populations 1.20820 0.91323 1.02717 1.02323 1.19712 0.95936 0.92570 1.00720 1.21021 0.94256 0.97267 1.01447 1.21010 0.94212 0.97851 1.01059 1.21197 0.99715 0.91580 1.00498 1.18937 0.92311 0.93021 1.00112 1.19666 0.99099 0.93089 0.95860 1.22451 1.00320 0.95618 0.97400 1.20944 0.98235 0.93828 0.91365 1.62421 1.47073 1.05272 1.10329 1.22372 0.94020 0.90462 1.00228 1.20993 0.96900 0.96780 0.94150 0.92063 1.21581 0.95473 0.99665 1.01334 1.19620 0.94129 0.93254 0.97782 1.21129 1.26570 1.10846 0.96324 0.90808 1.25033 0.96599 0.96636 0.95374 1.69915 1.40919 1.21037 1.22618 0.86809 0.80199 0.79390 0.83040 1.20389 1.21541 1.19157 1.22231 0.94613 0.92428 0.98512 1.20457 0.98151 0.97462 0.94750 1.19902 0.92613 0.95021 0.99619 1.20845 0.99822 0.94323 1.02339 0.91191 0.91259 0.91740 0.86376 0.86214 0.86152 0.87509 0.89795 0.94070 0.95224 0.91331 0.94463 0.93758 0.92146 0.97025 0.97115 0.92866 0.94931 0.89467 0.89979 0.91083 0.91316 0.91624 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.18 36.01 0.33 -0.48 16 2 C -0.09 -0.84 5.87 -104.68 -0.61 -1.46 16 3 C -0.12 -1.08 9.69 -39.50 -0.38 -1.47 16 4 C -0.12 -1.12 10.03 -39.64 -0.40 -1.51 16 5 C -0.11 -1.14 9.79 -39.20 -0.38 -1.52 16 6 C -0.04 -0.48 5.11 -105.02 -0.54 -1.02 16 7 C -0.08 -0.88 3.87 -102.72 -0.40 -1.27 16 8 C -0.14 -1.58 9.26 -36.40 -0.34 -1.91 16 9 C 0.08 1.02 5.56 -5.27 -0.03 0.99 16 10 N -0.53 -7.47 4.16 -236.13 -0.98 -8.45 16 11 C 0.06 0.92 4.36 -3.83 -0.02 0.90 16 12 C -0.07 -1.36 2.36 -90.62 -0.21 -1.57 16 13 H 0.06 1.24 6.51 -51.92 -0.34 0.90 16 14 C -0.12 -2.36 8.90 37.16 0.33 -2.03 16 15 C -0.01 -0.24 3.52 -27.88 -0.10 -0.33 16 16 C -0.51 -14.42 8.89 -34.44 -0.31 -14.72 16 17 H 0.07 2.24 7.32 -52.49 -0.38 1.86 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 24 C 0.05 0.67 5.42 -3.61 -0.02 0.65 16 25 C -0.07 -0.84 6.03 -28.02 -0.17 -1.01 16 26 C -0.07 -0.75 5.91 -104.23 -0.62 -1.37 16 27 C -0.12 -1.11 8.52 36.01 0.31 -0.80 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 6.72 -51.93 -0.35 0.11 16 30 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.11 1.12 7.98 -52.49 -0.42 0.70 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.03 0.48 8.04 -51.93 -0.42 0.07 16 38 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 41 H 0.06 1.30 6.83 -51.93 -0.35 0.94 16 42 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 43 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 45 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 46 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 51 H 0.08 0.83 7.08 -51.93 -0.37 0.46 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -30.53 393.89 -11.72 -42.26 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -9.13 Total: -1.52 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -3.65 Total: -28.16 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.21 Total: -35.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.53 -11.72 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308974231.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.458 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds