Wall clock time and date at job start Tue Mar 31 2020 10:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00066 * 2 1 4 4 H 1.48505 * 109.47190 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47063 * 120.00107 * 3 2 1 6 6 H 1.48495 * 109.47266 * 240.00346 * 3 2 1 7 7 C 1.37878 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46763 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47110 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99866 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99999 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00015 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99870 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46802 * 173.75366 * 16 15 13 18 18 H 1.08999 * 109.90886 * 58.26182 * 17 16 15 19 19 C 1.53991 * 109.91575 * 179.37110 * 17 16 15 20 20 C 1.54590 * 105.14176 * 120.57740 * 19 17 16 21 21 C 1.54938 * 102.92185 * 21.95405 * 20 19 17 22 22 N 1.47903 * 109.91611 * 296.96102 * 17 16 15 23 23 C 1.46895 * 111.00192 * 94.80228 * 22 17 16 24 24 C 1.53003 * 109.47034 * 173.49608 * 23 22 17 25 25 C 1.52997 * 109.47154 * 179.97438 * 24 23 22 26 26 O 1.42902 * 109.47138 * 180.02562 * 25 24 23 27 27 H 0.97003 * 119.99924 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47005 * 299.99305 * 9 7 2 29 29 H 1.08993 * 109.47206 * 59.99752 * 9 7 2 30 30 H 1.08994 * 109.46965 * 299.99835 * 10 9 7 31 31 H 1.09001 * 109.46810 * 59.99786 * 10 9 7 32 32 H 1.09007 * 109.46691 * 300.00233 * 11 10 9 33 33 H 1.08998 * 109.47089 * 59.99353 * 11 10 9 34 34 H 0.97000 * 120.00058 * 359.97438 * 12 11 10 35 35 H 0.97000 * 119.99909 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.47157 * 293.75017 * 16 15 13 37 37 H 1.09000 * 109.47000 * 53.75779 * 16 15 13 38 38 H 1.08997 * 110.30767 * 239.49529 * 19 17 16 39 39 H 1.09005 * 110.30806 * 1.55716 * 19 17 16 40 40 H 1.09004 * 110.72569 * 140.31261 * 20 19 17 41 41 H 1.08999 * 110.72385 * 263.41840 * 20 19 17 42 42 H 1.09009 * 110.66594 * 81.02056 * 21 20 19 43 43 H 1.08996 * 110.66999 * 203.97796 * 21 20 19 44 44 H 1.08994 * 109.47322 * 293.49896 * 23 22 17 45 45 H 1.09004 * 109.46972 * 53.50643 * 23 22 17 46 46 H 1.08997 * 109.47677 * 300.00643 * 24 23 22 47 47 H 1.09006 * 109.47128 * 60.00615 * 24 23 22 48 48 H 1.08997 * 109.47492 * 300.00926 * 25 24 23 49 49 H 1.09012 * 109.46792 * 60.00701 * 25 24 23 50 50 H 0.96704 * 113.99921 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0037 13 6 1.9830 -7.3713 -0.0036 14 8 0.7875 -7.5934 -0.0038 15 7 2.8588 -8.3957 -0.0045 16 6 2.3704 -9.7770 -0.0039 17 6 3.5522 -10.7358 -0.1621 18 1 4.2670 -10.5803 0.6460 19 6 3.0519 -12.1921 -0.1470 20 6 3.4917 -12.7842 -1.5055 21 6 4.6579 -11.8553 -1.9272 22 7 4.2080 -10.5158 -1.4694 23 6 5.3447 -9.5945 -1.3398 24 6 6.0936 -9.5180 -2.6718 25 6 7.2772 -8.5579 -2.5371 26 8 7.9763 -8.4860 -3.7813 27 1 -0.4850 -0.8401 0.0004 28 1 0.6240 -2.5575 0.8881 29 1 0.6246 -2.5563 -0.8919 30 1 2.8718 -3.6036 -0.8926 31 1 2.8719 -3.6051 0.8873 32 1 0.8539 -5.0453 0.8869 33 1 0.8532 -5.0443 -0.8930 34 1 3.3859 -5.9233 -0.0039 35 1 3.8125 -8.2185 -0.0048 36 1 1.8601 -9.9815 0.9372 37 1 1.6756 -9.9170 -0.8320 38 1 3.5136 -12.7422 0.6728 39 1 1.9660 -12.2181 -0.0549 40 1 3.8400 -13.8100 -1.3846 41 1 2.6772 -12.7377 -2.2284 42 1 5.5808 -12.1439 -1.4239 43 1 4.7902 -11.8707 -3.0089 44 1 4.9802 -8.6033 -1.0705 45 1 6.0194 -9.9568 -0.5641 46 1 6.4582 -10.5092 -2.9413 47 1 5.4190 -9.1557 -3.4477 48 1 6.9123 -7.5668 -2.2678 49 1 7.9520 -8.9198 -1.7612 50 1 8.7410 -7.8942 -3.7692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311913415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:41 Heat of formation + Delta-G solvation = -128.055982 kcal Electronic energy + Delta-G solvation = -26167.236696 eV Core-core repulsion = 22420.203935 eV Total energy + Delta-G solvation = -3747.032761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27684 -40.22127 -37.96925 -37.24138 -35.69419 -35.44223 -34.73262 -32.94034 -31.04853 -30.76128 -28.18726 -26.41457 -25.45534 -24.62195 -23.09821 -22.54057 -21.92654 -21.44560 -21.21106 -19.23423 -18.92562 -18.35616 -17.65139 -17.13130 -16.80791 -16.76362 -16.23819 -16.00580 -15.63158 -15.52361 -15.33467 -15.05304 -14.83615 -14.72791 -14.65117 -13.92467 -13.66747 -13.59667 -13.55244 -13.16815 -12.89043 -12.58624 -12.57427 -12.36330 -12.22080 -12.10555 -12.05618 -11.98558 -11.86780 -11.79312 -11.76704 -11.48380 -11.34780 -10.89267 -10.69469 -10.53730 -10.42672 -9.79514 -9.42428 -8.68085 -6.39182 1.54101 1.63179 1.66558 1.82051 2.11494 2.58992 2.75017 3.17128 3.23319 3.36832 3.67886 3.73787 3.88544 4.02080 4.05038 4.11366 4.16193 4.22211 4.27430 4.34451 4.42200 4.44398 4.54510 4.62108 4.62641 4.65196 4.74015 4.79923 4.84049 4.89448 4.95756 4.96713 5.05866 5.09233 5.18075 5.22597 5.29006 5.33930 5.44416 5.47699 5.48053 5.89539 5.93606 5.99485 6.04436 6.19246 6.56774 6.87043 7.04598 7.43995 7.53842 8.72738 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002381 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.062282 B =11759.098073 C =13551.497191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.120 2.880 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.617 4.617 8 H 0.058 0.942 9 C 0.007 3.993 10 C -0.093 4.093 11 C 0.150 3.850 12 N -0.731 5.731 13 C 0.696 3.304 14 O -0.641 6.641 15 N -0.727 5.727 16 C 0.154 3.846 17 C 0.062 3.938 18 H 0.075 0.925 19 C -0.122 4.122 20 C -0.121 4.121 21 C 0.035 3.965 22 N -0.528 5.528 23 C 0.051 3.949 24 C -0.115 4.115 25 C 0.074 3.926 26 O -0.599 6.599 27 H 0.254 0.746 28 H -0.010 1.010 29 H -0.012 1.012 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.410 0.590 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.836 -28.080 -0.984 33.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.941 3.059 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.654 4.654 8 H 0.077 0.923 9 C -0.030 4.030 10 C -0.131 4.131 11 C 0.025 3.975 12 N -0.387 5.387 13 C 0.396 3.604 14 O -0.523 6.523 15 N -0.385 5.385 16 C 0.030 3.970 17 C -0.047 4.047 18 H 0.093 0.907 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.092 4.092 22 N -0.253 5.253 23 C -0.077 4.077 24 C -0.152 4.152 25 C -0.004 4.004 26 O -0.408 6.408 27 H 0.064 0.936 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.246 0.754 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 16.756 -26.845 -1.523 31.682 hybrid contribution 1.273 -1.209 0.575 1.847 sum 18.029 -28.054 -0.949 33.362 Atomic orbital electron populations 1.70917 1.08143 1.29866 1.48845 1.27537 0.96599 1.07178 0.92777 0.82903 0.74063 0.70777 0.78162 1.21246 1.19110 1.19192 1.22475 0.94945 0.93045 1.54984 0.92343 1.19122 0.95159 0.94414 0.94354 1.21462 0.98163 0.91326 1.02156 1.21049 0.91383 0.84643 1.00388 1.44980 1.10651 1.03602 1.79461 1.16197 0.85125 0.81390 0.77672 1.90886 1.16510 1.84840 1.60088 1.45121 1.08924 1.04974 1.79485 1.21336 0.96324 0.78364 1.00999 1.22611 0.95293 0.95435 0.91374 0.90704 1.22383 1.02285 0.92531 0.98820 1.22483 0.97817 0.99224 0.96419 1.23257 0.97265 0.87639 1.01029 1.64653 1.25728 1.10343 1.24587 1.22261 0.91464 0.97300 0.96698 1.21450 0.96030 1.00200 0.97568 1.22181 0.93537 0.98959 0.85714 1.86417 1.47930 1.71016 1.35407 0.93624 0.99211 0.99345 0.91450 0.91261 0.93442 0.93721 0.75364 0.75667 0.91728 0.92943 0.89148 0.90628 0.89178 0.91573 0.92482 0.90336 0.90858 0.92523 0.91163 0.92603 0.92943 0.91958 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.65 21.45 0.29 -59.26 16 2 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 3 Si 1.12 49.99 29.90 68.60 2.05 52.04 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.62 -35.02 9.11 25.60 0.23 -34.79 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.01 0.38 4.28 29.85 0.13 0.51 16 10 C -0.09 -3.66 5.27 30.60 0.16 -3.50 16 11 C 0.15 5.53 5.67 86.38 0.49 6.02 16 12 N -0.73 -21.25 5.56 -478.54 -2.66 -23.91 16 13 C 0.70 21.90 8.57 179.05 1.53 23.43 16 14 O -0.64 -26.62 16.33 -3.99 -0.07 -26.68 16 15 N -0.73 -15.77 5.32 -478.51 -2.55 -18.31 16 16 C 0.15 3.06 5.12 86.38 0.44 3.50 16 17 C 0.06 0.79 2.70 45.06 0.12 0.91 16 18 H 0.08 0.75 7.64 -2.39 -0.02 0.73 16 19 C -0.12 -1.20 6.57 31.47 0.21 -0.99 16 20 C -0.12 -1.17 7.06 31.80 0.22 -0.95 16 21 C 0.04 0.39 5.24 86.65 0.45 0.84 16 22 N -0.53 -7.36 4.95 -858.09 -4.25 -11.61 16 23 C 0.05 0.59 4.57 86.30 0.39 0.99 16 24 C -0.11 -1.56 5.34 30.59 0.16 -1.40 16 25 C 0.07 0.87 7.05 71.98 0.51 1.38 16 26 O -0.60 -8.92 13.66 -148.98 -2.04 -10.96 16 27 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 28 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 29 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 8.91 8.49 -92.71 -0.79 8.12 16 35 H 0.40 6.32 5.63 -92.71 -0.52 5.80 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.83 7.69 -2.38 -0.02 0.82 16 40 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.50 8.02 -2.38 -0.02 0.48 16 43 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 44 H 0.07 0.87 5.52 -2.39 -0.01 0.86 16 45 H 0.06 0.47 7.92 -2.38 -0.02 0.45 16 46 H 0.07 0.95 6.86 -2.39 -0.02 0.94 16 47 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 50 H 0.40 2.40 9.12 -74.05 -0.68 1.72 16 Total: -1.00 -79.24 395.88 -4.64 -83.87 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.95 Total: 20.99 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.52 Total: -6.17 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -9.16 Total: -113.10 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -2.10 Total: -37.64 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -79.24 -4.64 -83.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311913415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.181 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds