Wall clock time and date at job start Tue Mar 31 2020 11:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99577 * 2 1 4 4 C 1.53121 * 109.52120 * 209.99958 * 3 2 1 5 5 C 1.53042 * 109.27688 * 182.43939 * 4 3 2 6 6 N 1.46850 * 109.52253 * 59.17629 * 5 4 3 7 7 C 1.46899 * 110.99964 * 174.15723 * 6 5 4 8 8 C 1.53000 * 109.47109 * 170.00396 * 7 6 5 9 9 N 1.46498 * 109.47009 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99978 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46845 * 111.20209 * 298.25864 * 6 5 4 26 26 C 1.53040 * 109.52293 * 61.74067 * 25 6 5 27 27 H 1.08996 * 109.47517 * 299.99867 * 1 2 3 28 28 H 1.08997 * 109.46958 * 60.00453 * 1 2 3 29 29 H 1.09003 * 109.46569 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.57593 * 330.15613 * 3 2 1 31 31 H 1.08997 * 109.50090 * 62.49917 * 4 3 2 32 32 H 1.08998 * 109.49934 * 302.37667 * 4 3 2 33 33 H 1.09000 * 109.45880 * 299.16368 * 5 4 3 34 34 H 1.08994 * 109.45315 * 179.18808 * 5 4 3 35 35 H 1.09008 * 109.46964 * 50.00102 * 7 6 5 36 36 H 1.09001 * 109.47629 * 290.00409 * 7 6 5 37 37 H 1.08996 * 109.47284 * 60.00414 * 8 7 6 38 38 H 1.09001 * 109.47048 * 299.99938 * 8 7 6 39 39 H 0.97004 * 120.00084 * 359.97438 * 9 8 7 40 40 H 1.00903 * 110.99982 * 296.03961 * 14 12 10 41 41 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 42 42 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 43 43 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 46 46 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.46557 * 181.75670 * 25 6 5 48 48 H 1.09000 * 109.46075 * 301.72654 * 25 6 5 49 49 H 1.09002 * 109.50240 * 180.88147 * 26 25 6 50 50 H 1.09004 * 109.50429 * 60.75950 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3601 1.2647 -0.7216 5 6 4.0052 2.6514 -0.6653 6 7 4.1907 3.0498 0.7359 7 6 4.9329 4.3140 0.8299 8 6 4.8916 4.8236 2.2719 9 7 5.6312 6.0847 2.3655 10 6 5.7302 6.7217 3.5491 11 8 5.2066 6.2511 4.5366 12 6 6.4915 8.0187 3.6455 13 1 6.2845 8.6278 2.7656 14 7 6.0728 8.7437 4.8525 15 6 7.9913 7.7253 3.7213 16 6 8.7705 9.0417 3.6936 17 6 10.2477 8.7527 3.7677 18 1 10.5957 7.7324 3.8331 19 6 11.1546 9.7911 3.7573 20 7 12.4437 9.5389 3.8225 21 14 10.5525 11.5563 3.6521 22 1 10.3357 12.0878 5.0216 23 1 11.5681 12.3849 2.9544 24 1 9.2747 11.5991 2.8965 25 6 2.9035 3.1418 1.4367 26 6 2.2255 1.7698 1.4432 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.3449 2.0014 -0.5111 31 1 3.2082 0.9760 -1.7616 32 1 4.0118 0.5401 -0.2335 33 1 3.3593 3.3729 -1.1656 34 1 4.9731 2.6220 -1.1657 35 1 4.4773 5.0527 0.1702 36 1 5.9685 4.1505 0.5318 37 1 5.3472 4.0851 2.9315 38 1 3.8560 4.9873 2.5700 39 1 6.0504 6.4610 1.5757 40 1 5.0999 9.0059 4.7976 41 1 6.2544 8.1996 5.6825 42 1 8.2849 7.1112 2.8700 43 1 8.2109 7.1925 4.6466 44 1 8.4769 9.6558 4.5449 45 1 8.5509 9.5745 2.7683 46 1 13.0818 10.2695 3.8155 47 1 3.0712 3.4688 2.4628 48 1 2.2629 3.8611 0.9265 49 1 1.2630 1.8419 1.9497 50 1 2.8594 1.0530 1.9652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327182766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:53 Heat of formation + Delta-G solvation = -91.170594 kcal Electronic energy + Delta-G solvation = -26056.244292 eV Core-core repulsion = 22310.811002 eV Total energy + Delta-G solvation = -3745.433291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18219 -39.66074 -37.85353 -35.57380 -35.04498 -32.85338 -32.74438 -31.42448 -30.49805 -28.98919 -27.15958 -26.43678 -24.68881 -23.67259 -23.07315 -21.63172 -20.54167 -20.33830 -19.86133 -17.40144 -17.15588 -16.72272 -16.55053 -16.19227 -15.78959 -15.60044 -15.48913 -15.16110 -14.95220 -14.64546 -14.14238 -13.93269 -13.80985 -13.58615 -13.45969 -13.29609 -12.65255 -12.59044 -12.39608 -12.36601 -12.01511 -11.88958 -11.69731 -11.62288 -11.39209 -11.15854 -10.99991 -10.93441 -10.87914 -10.38909 -10.00954 -9.92008 -9.71815 -9.59952 -9.14234 -9.10969 -8.78539 -8.51830 -8.40371 -5.99205 -3.96794 2.68649 2.96220 3.26843 3.37381 3.43855 3.48954 3.64309 4.26790 4.31529 4.49143 4.51243 4.58130 4.70502 4.74843 4.78763 4.86250 4.87108 4.92680 4.96170 5.02569 5.08385 5.10891 5.20013 5.28789 5.34679 5.38873 5.39374 5.45937 5.53712 5.61816 5.67794 5.68372 5.74849 5.85316 6.27635 6.32817 6.47750 6.59092 6.60891 6.75964 6.87549 7.23085 7.38092 7.47691 7.57534 7.65367 7.86499 8.22530 8.58344 9.05679 9.63738 11.14262 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002000 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.215186 B =13999.241690 C =14577.699150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.088 3.912 4 C -0.113 4.113 5 C 0.059 3.941 6 N -0.533 5.533 7 C 0.045 3.955 8 C 0.114 3.886 9 N -0.730 5.730 10 C 0.485 3.515 11 O -0.552 6.552 12 C 0.075 3.925 13 H 0.098 0.902 14 N -0.811 5.811 15 C -0.087 4.087 16 C -0.004 4.004 17 C -0.522 4.522 18 H 0.069 0.931 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.265 1.265 25 C 0.048 3.952 26 C -0.138 4.138 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.335 0.665 41 H 0.350 0.650 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.013 0.987 46 H 0.262 0.738 47 H 0.089 0.911 48 H 0.034 0.966 49 H 0.068 0.932 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 -15.038 -11.187 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.030 3.970 4 C -0.151 4.151 5 C -0.068 4.068 6 N -0.259 5.259 7 C -0.083 4.083 8 C -0.010 4.010 9 N -0.384 5.384 10 C 0.271 3.729 11 O -0.429 6.429 12 C -0.041 4.041 13 H 0.116 0.884 14 N -0.339 5.339 15 C -0.126 4.126 16 C -0.042 4.042 17 C -0.560 4.560 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.545 5.545 21 Si 0.711 3.289 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.080 4.080 26 C -0.176 4.176 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.237 0.763 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.031 0.969 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.052 0.948 49 H 0.086 0.914 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.484 -15.268 -10.437 30.685 hybrid contribution -1.385 1.075 -0.718 1.894 sum -25.869 -14.193 -11.155 31.545 Atomic orbital electron populations 1.22785 0.81185 1.02760 0.99879 1.87930 1.19540 1.27763 1.95064 1.22218 0.94776 0.84398 0.95636 1.21644 0.95210 0.97490 1.00771 1.22070 1.00830 0.95576 0.88372 1.61939 1.19309 1.30468 1.14148 1.22282 1.00045 0.89979 0.96021 1.21436 0.96896 0.86307 0.96393 1.46081 1.55985 1.24338 1.11974 1.22626 0.79947 0.87990 0.82386 1.90657 1.48109 1.68012 1.36126 1.21863 0.97511 0.88905 0.95772 0.88436 1.59034 1.24897 1.46094 1.03892 1.21474 0.88326 1.01110 1.01667 1.19486 0.95131 0.92492 0.97072 1.21189 0.89249 0.95088 1.50434 0.91282 1.25022 0.94732 0.99185 0.94611 1.69930 1.01036 1.32199 1.51361 0.86727 0.78659 0.84912 0.78635 1.20303 1.21729 1.18929 1.22232 0.89285 0.96378 1.00108 1.22092 1.00900 0.97309 0.97299 0.94064 0.94154 0.89609 0.92567 0.90743 0.89853 0.94637 0.89677 0.94023 0.89369 0.90578 0.91570 0.76271 0.85363 0.83567 0.92129 0.92197 0.95247 0.96911 0.92852 0.89304 0.94751 0.91375 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.30 10.35 -35.23 -0.36 -3.66 16 3 C 0.09 0.65 2.68 -26.61 -0.07 0.58 16 4 C -0.11 -0.80 5.75 -26.65 -0.15 -0.95 16 5 C 0.06 0.41 5.42 -3.83 -0.02 0.39 16 6 N -0.53 -4.38 4.81 -234.67 -1.13 -5.51 16 7 C 0.04 0.36 5.39 -3.82 -0.02 0.34 16 8 C 0.11 1.18 4.92 -4.04 -0.02 1.16 16 9 N -0.73 -8.34 5.56 -60.30 -0.33 -8.68 16 10 C 0.49 7.16 7.07 -10.99 -0.08 7.08 16 11 O -0.55 -9.78 16.25 5.56 0.09 -9.69 16 12 C 0.08 1.16 3.15 -68.86 -0.22 0.94 16 13 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 14 N -0.81 -12.56 8.44 -5.65 -0.05 -12.61 16 15 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 16 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 17 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 18 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 C 0.05 0.37 4.85 -3.83 -0.02 0.35 16 26 C -0.14 -1.05 5.72 -26.65 -0.15 -1.20 16 27 H 0.04 0.21 7.96 -51.93 -0.41 -0.21 16 28 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.04 0.30 8.08 -51.92 -0.42 -0.12 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.70 6.21 -51.93 -0.32 0.38 16 39 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 40 H 0.33 4.43 9.06 -39.29 -0.36 4.08 16 41 H 0.35 5.59 8.58 -39.29 -0.34 5.25 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.09 0.75 5.81 -51.93 -0.30 0.45 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.07 0.46 7.96 -51.93 -0.41 0.05 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -33.84 393.57 -9.21 -43.06 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -9.14 Total: 6.61 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.32 Total: -5.41 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.74 Total: -54.14 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.27 Total: -13.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.84 -9.21 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327182766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.114 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds