Wall clock time and date at job start Tue Mar 31 2020 11:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99577 * 2 1 4 4 C 1.53121 * 109.52120 * 209.99958 * 3 2 1 5 5 C 1.53042 * 109.27688 * 182.43939 * 4 3 2 6 6 N 1.46850 * 109.52253 * 59.17629 * 5 4 3 7 7 C 1.46899 * 110.99964 * 174.15723 * 6 5 4 8 8 C 1.53000 * 109.47109 * 170.00396 * 7 6 5 9 9 N 1.46498 * 109.47009 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99978 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46845 * 111.20209 * 298.25864 * 6 5 4 26 26 C 1.53040 * 109.52293 * 61.74067 * 25 6 5 27 27 H 1.08996 * 109.47517 * 299.99867 * 1 2 3 28 28 H 1.08997 * 109.46958 * 60.00453 * 1 2 3 29 29 H 1.09003 * 109.46569 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.57593 * 330.15613 * 3 2 1 31 31 H 1.08997 * 109.50090 * 62.49917 * 4 3 2 32 32 H 1.08998 * 109.49934 * 302.37667 * 4 3 2 33 33 H 1.09000 * 109.45880 * 299.16368 * 5 4 3 34 34 H 1.08994 * 109.45315 * 179.18808 * 5 4 3 35 35 H 1.09008 * 109.46964 * 50.00102 * 7 6 5 36 36 H 1.09001 * 109.47629 * 290.00409 * 7 6 5 37 37 H 1.08996 * 109.47284 * 60.00414 * 8 7 6 38 38 H 1.09001 * 109.47048 * 299.99938 * 8 7 6 39 39 H 0.97004 * 120.00084 * 359.97438 * 9 8 7 40 40 H 1.00903 * 110.99982 * 296.03961 * 14 12 10 41 41 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 42 42 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 43 43 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 46 46 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.46557 * 181.75670 * 25 6 5 48 48 H 1.09000 * 109.46075 * 301.72654 * 25 6 5 49 49 H 1.09002 * 109.50240 * 180.88147 * 26 25 6 50 50 H 1.09004 * 109.50429 * 60.75950 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3601 1.2647 -0.7216 5 6 4.0052 2.6514 -0.6653 6 7 4.1907 3.0498 0.7359 7 6 4.9329 4.3140 0.8299 8 6 4.8916 4.8236 2.2719 9 7 5.6312 6.0847 2.3655 10 6 5.7302 6.7217 3.5491 11 8 5.2066 6.2511 4.5366 12 6 6.4915 8.0187 3.6455 13 1 6.2845 8.6278 2.7656 14 7 6.0728 8.7437 4.8525 15 6 7.9913 7.7253 3.7213 16 6 8.7705 9.0417 3.6936 17 6 10.2477 8.7527 3.7677 18 1 10.5957 7.7324 3.8331 19 6 11.1546 9.7911 3.7573 20 7 12.4437 9.5389 3.8225 21 14 10.5525 11.5563 3.6521 22 1 10.3357 12.0878 5.0216 23 1 11.5681 12.3849 2.9544 24 1 9.2747 11.5991 2.8965 25 6 2.9035 3.1418 1.4367 26 6 2.2255 1.7698 1.4432 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.3449 2.0014 -0.5111 31 1 3.2082 0.9760 -1.7616 32 1 4.0118 0.5401 -0.2335 33 1 3.3593 3.3729 -1.1656 34 1 4.9731 2.6220 -1.1657 35 1 4.4773 5.0527 0.1702 36 1 5.9685 4.1505 0.5318 37 1 5.3472 4.0851 2.9315 38 1 3.8560 4.9873 2.5700 39 1 6.0504 6.4610 1.5757 40 1 5.0999 9.0059 4.7976 41 1 6.2544 8.1996 5.6825 42 1 8.2849 7.1112 2.8700 43 1 8.2109 7.1925 4.6466 44 1 8.4769 9.6558 4.5449 45 1 8.5509 9.5745 2.7683 46 1 13.0818 10.2695 3.8155 47 1 3.0712 3.4688 2.4628 48 1 2.2629 3.8611 0.9265 49 1 1.2630 1.8419 1.9497 50 1 2.8594 1.0530 1.9652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327182766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:52 Heat of formation + Delta-G solvation = -118.971158 kcal Electronic energy + Delta-G solvation = -26057.449815 eV Core-core repulsion = 22310.811002 eV Total energy + Delta-G solvation = -3746.638814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13687 -40.46304 -38.47992 -36.90700 -36.11389 -34.77194 -33.54803 -32.27256 -32.00203 -29.85248 -28.23235 -27.41679 -25.59709 -24.77686 -23.87412 -22.42962 -22.11252 -21.21054 -20.88354 -18.97202 -18.26003 -17.84085 -17.43812 -17.12099 -16.65365 -16.59365 -16.22827 -16.06882 -15.85963 -15.64472 -15.58155 -15.02647 -14.84339 -14.72542 -14.46287 -14.13820 -14.03506 -13.87784 -13.52574 -13.19290 -12.95930 -12.81371 -12.67107 -12.55903 -12.50184 -12.21377 -11.97493 -11.92670 -11.78485 -11.74236 -11.59956 -11.48916 -11.27330 -11.13191 -10.69988 -10.47837 -10.15136 -9.67431 -9.36488 -8.23693 -6.26962 1.42557 1.43893 1.50157 1.56522 2.05217 2.42488 2.76334 2.95047 3.13008 3.57184 3.63829 3.74454 3.83155 3.89569 3.98929 4.05665 4.10717 4.20351 4.28615 4.32080 4.36857 4.41319 4.44778 4.49834 4.55615 4.69905 4.72650 4.80161 4.83507 4.85015 4.86658 4.88015 4.93122 4.99196 5.16163 5.16419 5.25924 5.35646 5.52512 5.67235 5.74404 5.97979 6.02366 6.07766 6.25660 6.33981 6.43813 6.53941 6.81907 7.14085 7.37526 8.93172 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002000 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.215186 B =13999.241690 C =14577.699150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.087 3.913 4 C -0.111 4.111 5 C 0.062 3.938 6 N -0.548 5.548 7 C 0.054 3.946 8 C 0.118 3.882 9 N -0.715 5.715 10 C 0.487 3.513 11 O -0.584 6.584 12 C 0.085 3.915 13 H 0.123 0.877 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.002 3.998 17 C -0.532 4.532 18 H 0.028 0.972 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.240 1.240 25 C 0.051 3.949 26 C -0.135 4.135 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.349 0.651 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.027 0.973 45 H 0.026 0.974 46 H 0.264 0.736 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.519 -13.708 -12.924 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.030 3.970 4 C -0.149 4.149 5 C -0.066 4.066 6 N -0.274 5.274 7 C -0.074 4.074 8 C -0.006 4.006 9 N -0.368 5.368 10 C 0.272 3.728 11 O -0.464 6.464 12 C -0.030 4.030 13 H 0.141 0.859 14 N -0.348 5.348 15 C -0.118 4.118 16 C -0.035 4.035 17 C -0.570 4.570 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.778 3.222 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.163 1.163 25 C -0.077 4.077 26 C -0.173 4.173 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.816 -13.954 -12.220 32.606 hybrid contribution -0.641 0.526 -0.169 0.846 sum -27.458 -13.427 -12.389 32.980 Atomic orbital electron populations 1.22949 0.79858 1.03686 1.00658 1.87901 1.21146 1.28491 1.95173 1.22257 0.95090 0.84316 0.95374 1.21628 0.94826 0.97328 1.01134 1.22092 1.01434 0.95488 0.87579 1.61925 1.19634 1.30633 1.15204 1.22184 1.00469 0.90334 0.94411 1.21429 0.96339 0.85147 0.97693 1.45959 1.55114 1.24199 1.11519 1.22420 0.79777 0.87788 0.82776 1.90651 1.49685 1.68657 1.37439 1.21679 0.94764 0.89784 0.96819 0.85902 1.59025 1.26116 1.45980 1.03691 1.21271 0.90767 0.98815 1.00989 1.19375 0.92154 0.94659 0.97324 1.21586 0.92336 0.93346 1.49745 0.95407 1.26029 0.94715 1.04448 0.94272 1.70090 1.02649 1.33857 1.53028 0.85592 0.79084 0.78448 0.79045 1.19887 1.21349 1.16268 1.22177 0.89352 0.96553 0.99615 1.22046 1.00825 0.96785 0.97612 0.93549 0.93054 0.88743 0.91386 0.89729 0.91544 0.93495 0.89022 0.92333 0.89096 0.92772 0.91554 0.74695 0.83777 0.84122 0.91398 0.94343 0.95500 0.95576 0.92694 0.90375 0.93782 0.90666 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.41 -6.67 10.35 -148.98 -1.54 -8.21 16 3 C 0.09 1.19 2.68 30.68 0.08 1.27 16 4 C -0.11 -1.45 5.75 30.65 0.18 -1.27 16 5 C 0.06 0.72 5.42 86.33 0.47 1.19 16 6 N -0.55 -8.24 4.81 -896.35 -4.31 -12.54 16 7 C 0.05 0.76 5.39 86.30 0.46 1.22 16 8 C 0.12 2.29 4.92 86.38 0.43 2.72 16 9 N -0.71 -14.88 5.56 -463.07 -2.57 -17.45 16 10 C 0.49 13.61 7.07 87.66 0.62 14.23 16 11 O -0.58 -20.30 16.25 -3.03 -0.05 -20.34 16 12 C 0.09 2.44 3.15 44.17 0.14 2.58 16 13 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 14 N -0.82 -23.81 8.44 -171.80 -1.45 -25.26 16 15 C -0.08 -2.97 4.78 30.60 0.15 -2.83 16 16 C 0.00 0.11 3.93 29.85 0.12 0.22 16 17 C -0.53 -30.65 9.66 25.60 0.25 -30.40 16 18 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 19 C 0.00 0.09 5.47 84.66 0.46 0.55 16 20 N -0.96 -60.49 13.96 21.45 0.30 -60.19 16 21 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.24 -10.14 6.54 99.48 0.65 -9.48 16 25 C 0.05 0.73 4.85 86.33 0.42 1.15 16 26 C -0.13 -1.96 5.72 30.65 0.18 -1.78 16 27 H 0.05 0.41 7.96 -2.39 -0.02 0.39 16 28 H 0.05 0.39 8.09 -2.39 -0.02 0.38 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 35 H 0.06 0.65 8.08 -2.38 -0.02 0.64 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.33 6.21 -2.39 -0.01 1.31 16 39 H 0.42 6.51 8.47 -92.71 -0.79 5.72 16 40 H 0.35 8.44 9.06 -89.69 -0.81 7.63 16 41 H 0.35 10.72 8.58 -89.69 -0.77 9.95 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.03 1.24 7.18 -2.39 -0.02 1.22 16 45 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 46 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 47 H 0.08 1.29 5.81 -2.39 -0.01 1.27 16 48 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.96 7.96 -2.39 -0.02 0.94 16 50 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.94 393.57 -4.06 -77.99 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -1.49 Total: 29.23 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.17 Total: -9.68 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -8.03 Total: -115.44 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.59 Total: -28.55 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -73.94 -4.06 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327182766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.978 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds