Wall clock time and date at job start Tue Mar 31 2020 11:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00166 * 2 1 4 4 C 1.46904 * 110.99832 * 123.95517 * 2 1 3 5 5 C 1.52998 * 109.54017 * 174.68632 * 4 2 1 6 6 N 1.46504 * 109.46964 * 305.18992 * 5 4 2 7 7 C 1.34783 * 119.99996 * 177.16806 * 6 5 4 8 8 O 1.21286 * 119.99511 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00158 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47261 * 39.99365 * 9 7 6 11 11 N 1.46896 * 109.47312 * 159.99681 * 9 7 6 12 12 C 1.53004 * 109.47043 * 279.99901 * 9 7 6 13 13 C 1.53006 * 109.47064 * 174.99920 * 12 9 7 14 14 C 1.50698 * 109.47200 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99519 * 359.72322 * 14 13 12 16 16 C 1.37872 * 120.00297 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99722 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46974 * 120.00436 * 18 16 14 21 21 H 1.48497 * 109.47267 * 240.00263 * 18 16 14 22 22 C 1.53180 * 109.61402 * 294.90628 * 4 2 1 23 23 C 1.53092 * 109.15969 * 176.89405 * 22 4 2 24 24 O 1.42903 * 109.41571 * 302.38792 * 23 22 4 25 25 C 1.42906 * 114.09453 * 61.15845 * 24 23 22 26 26 C 1.53089 * 109.42040 * 298.84321 * 25 24 23 27 27 H 1.08998 * 109.47342 * 290.54281 * 1 2 3 28 28 H 1.09005 * 109.47386 * 50.54141 * 1 2 3 29 29 H 1.09003 * 109.47618 * 170.54310 * 1 2 3 30 30 H 1.09000 * 109.47202 * 183.95942 * 3 2 1 31 31 H 1.09010 * 109.47018 * 303.95507 * 3 2 1 32 32 H 1.08994 * 109.47213 * 63.95379 * 3 2 1 33 33 H 1.08998 * 109.47095 * 185.19523 * 5 4 2 34 34 H 1.08999 * 109.47531 * 65.18685 * 5 4 2 35 35 H 0.97001 * 119.99880 * 357.16157 * 6 5 4 36 36 H 1.00902 * 110.99715 * 60.00271 * 11 9 7 37 37 H 1.00900 * 111.00257 * 183.95267 * 11 9 7 38 38 H 1.09004 * 109.46969 * 55.00108 * 12 9 7 39 39 H 1.08997 * 109.46962 * 294.99871 * 12 9 7 40 40 H 1.08997 * 109.46995 * 59.99570 * 13 12 9 41 41 H 1.09001 * 109.46847 * 300.00182 * 13 12 9 42 42 H 0.97003 * 119.99662 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.52379 * 296.80062 * 22 4 2 44 44 H 1.08994 * 109.52423 * 56.98633 * 22 4 2 45 45 H 1.09002 * 109.47971 * 182.40823 * 23 22 4 46 46 H 1.08999 * 109.48100 * 62.37369 * 23 22 4 47 47 H 1.09004 * 109.47965 * 178.85315 * 25 24 23 48 48 H 1.09007 * 109.49098 * 58.83298 * 25 24 23 49 49 H 1.09005 * 109.51908 * 297.70484 * 26 25 24 50 50 H 1.08995 * 109.52657 * 177.51521 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5191 -0.8563 1.0326 6 7 3.8865 -1.4146 -0.2712 7 6 5.1852 -1.5341 -0.6113 8 8 6.0497 -1.1790 0.1618 9 6 5.5632 -2.1088 -1.9520 10 1 4.8791 -1.7346 -2.7137 11 7 6.9360 -1.7079 -2.2873 12 6 5.4771 -3.6354 -1.8951 13 6 5.7390 -4.2133 -3.2874 14 6 5.6549 -5.7168 -3.2312 15 1 5.4409 -6.2110 -2.2951 16 6 5.8562 -6.4618 -4.3738 17 7 6.1221 -5.8601 -5.5127 18 14 5.7526 -8.3256 -4.3040 19 1 5.4437 -8.7525 -2.9157 20 1 4.6797 -8.7962 -5.2165 21 1 7.0515 -8.9097 -4.7245 22 6 1.6124 -0.0702 2.4474 23 6 2.0984 -0.9167 3.6268 24 8 1.5287 -2.2244 3.5397 25 6 1.8909 -2.9409 2.3575 26 6 1.3966 -2.1759 1.1270 27 1 -0.3634 0.3606 0.9623 28 1 -0.3634 0.6531 -0.7935 29 1 -0.3634 -1.0137 -0.1688 30 1 3.0828 1.3432 -0.0710 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 3.9003 -1.5011 1.8243 34 1 3.9501 0.1395 1.1358 35 1 3.1951 -1.6982 -0.8895 36 1 7.5897 -2.0433 -1.5957 37 1 7.1907 -2.0268 -3.2101 38 1 4.4828 -3.9310 -1.5601 39 1 6.2235 -4.0156 -1.1976 40 1 6.7332 -3.9176 -3.6224 41 1 4.9926 -3.8330 -3.9849 42 1 6.2641 -6.3843 -6.3164 43 1 2.0803 0.9134 2.4877 44 1 0.5291 0.0384 2.4989 45 1 1.7911 -0.4479 4.5617 46 1 3.1854 -0.9910 3.5974 47 1 1.4342 -3.9305 2.3780 48 1 2.9752 -3.0420 2.3113 49 1 0.3089 -2.1098 1.1519 50 1 1.7102 -2.6981 0.2232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329271517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:07 Heat of formation + Delta-G solvation = -83.211699 kcal Electronic energy + Delta-G solvation = -27988.791036 eV Core-core repulsion = 24243.702869 eV Total energy + Delta-G solvation = -3745.088167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02367 -39.23260 -37.45344 -35.47109 -34.36714 -32.82712 -32.17877 -31.56686 -29.85874 -28.60331 -27.22984 -26.06615 -24.89535 -23.98261 -23.32861 -22.65391 -20.65709 -19.73047 -18.79560 -17.32450 -17.11595 -16.41387 -16.21503 -16.08956 -15.68261 -15.25857 -14.92108 -14.74244 -14.56623 -14.38603 -14.30862 -14.05372 -13.69362 -13.61717 -13.18249 -12.92728 -12.64227 -12.56357 -12.30275 -12.19885 -12.12229 -11.93045 -11.63707 -11.48662 -11.33554 -11.08475 -11.04455 -10.91300 -10.65342 -10.51186 -9.97023 -9.88471 -9.85582 -9.25588 -9.16780 -8.84952 -8.59466 -8.43123 -8.14102 -6.07537 -4.10439 3.01224 3.26658 3.27305 3.34826 3.38652 3.54128 3.66653 4.22125 4.30465 4.40414 4.54080 4.63553 4.82612 4.85359 4.97171 5.04381 5.11483 5.15515 5.21079 5.24075 5.28862 5.29450 5.34319 5.36721 5.41817 5.52357 5.53775 5.63393 5.65205 5.69795 5.77148 5.81178 5.82209 5.87672 6.32202 6.54505 6.56770 6.70028 6.73770 6.90134 6.90360 7.49347 7.54770 7.64502 7.82148 7.89913 7.94736 8.32687 8.56021 8.95833 9.54463 11.03402 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003263 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.966839 B = 8578.256622 C = 9170.981778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.529 5.529 3 C 0.017 3.983 4 C 0.100 3.900 5 C 0.132 3.868 6 N -0.720 5.720 7 C 0.524 3.476 8 O -0.545 6.545 9 C 0.076 3.924 10 H 0.096 0.904 11 N -0.831 5.831 12 C -0.136 4.136 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.181 4.181 23 C 0.061 3.939 24 O -0.381 6.381 25 C 0.057 3.943 26 C -0.146 4.146 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.345 0.655 37 H 0.353 0.647 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 13.273 14.419 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.252 5.252 3 C -0.130 4.130 4 C 0.010 3.990 5 C 0.007 3.993 6 N -0.374 5.374 7 C 0.311 3.689 8 O -0.422 6.422 9 C -0.039 4.039 10 H 0.114 0.886 11 N -0.363 5.363 12 C -0.176 4.176 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.221 4.221 23 C -0.016 4.016 24 O -0.300 6.300 25 C -0.020 4.020 26 C -0.184 4.184 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.117 0.883 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.995 13.959 14.545 23.458 hybrid contribution -0.390 -1.609 0.024 1.656 sum -12.384 12.349 14.569 22.763 Atomic orbital electron populations 1.22504 0.87279 1.02842 1.00429 1.62172 1.07993 1.14046 1.40991 1.22486 1.01502 0.88526 1.00530 1.21354 0.94391 0.94378 0.88919 1.21368 0.92047 0.99325 0.86523 1.45820 1.07811 1.65254 1.18496 1.20885 0.81837 0.77085 0.89092 1.90625 1.49164 1.49452 1.52912 1.21447 0.93342 0.95693 0.93457 0.88625 1.58741 1.01925 1.67336 1.08261 1.22366 1.01423 0.91548 1.02258 1.19106 0.97062 0.95644 0.89510 1.21219 1.48426 0.91640 0.94752 0.92691 1.25012 0.95158 0.98642 0.95517 1.69965 1.48359 1.35410 0.99465 0.86541 0.77695 0.85720 0.78092 1.19762 1.20957 1.20972 1.22814 1.02882 1.00357 0.96020 1.22563 0.97720 0.83315 0.98025 1.87940 1.72869 1.27744 1.41449 1.22692 1.00037 0.95428 0.83829 1.22335 1.01650 0.94494 0.99941 0.95198 0.91288 0.90822 0.90831 0.91168 0.95288 0.91325 0.91549 0.75655 0.84237 0.83144 0.92598 0.92801 0.96448 0.96303 0.92964 0.90316 0.90238 0.88830 0.92619 0.88275 0.92421 0.90332 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.75 60.06 0.53 0.65 16 2 N -0.53 -4.62 4.32 -235.19 -1.02 -5.64 16 3 C 0.02 0.15 8.82 60.06 0.53 0.68 16 4 C 0.10 0.89 0.11 -131.42 -0.01 0.87 16 5 C 0.13 1.49 3.52 -4.04 -0.01 1.47 16 6 N -0.72 -9.32 5.11 -60.29 -0.31 -9.63 16 7 C 0.52 8.66 7.08 -10.99 -0.08 8.58 16 8 O -0.55 -10.63 16.25 5.55 0.09 -10.54 16 9 C 0.08 1.30 3.21 -68.87 -0.22 1.08 16 10 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 11 N -0.83 -14.51 8.94 -5.66 -0.05 -14.56 16 12 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 13 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.18 -1.42 4.20 -26.59 -0.11 -1.53 16 23 C 0.06 0.52 6.57 37.20 0.24 0.76 16 24 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 25 C 0.06 0.55 6.57 37.20 0.24 0.79 16 26 C -0.15 -1.31 4.51 -26.59 -0.12 -1.43 16 27 H 0.03 0.21 6.16 -51.93 -0.32 -0.11 16 28 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 29 H 0.07 0.54 6.50 -51.93 -0.34 0.20 16 30 H 0.07 0.72 6.46 -51.93 -0.34 0.39 16 31 H 0.07 0.54 8.06 -51.92 -0.42 0.13 16 32 H 0.03 0.21 6.37 -51.93 -0.33 -0.12 16 33 H 0.07 0.83 5.03 -51.93 -0.26 0.57 16 34 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 35 H 0.41 4.91 7.30 -40.82 -0.30 4.61 16 36 H 0.34 6.11 8.58 -39.29 -0.34 5.77 16 37 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 0.57 6.59 -51.93 -0.34 0.23 16 44 H 0.08 0.62 6.30 -51.93 -0.33 0.29 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.48 6.72 -51.93 -0.35 0.13 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.60 6.49 -51.93 -0.34 0.26 16 49 H 0.08 0.66 6.30 -51.93 -0.33 0.34 16 50 H 0.09 0.83 7.09 -51.93 -0.37 0.46 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -31.30 374.94 -8.17 -39.47 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.19 Total: 12.15 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.31 Total: -3.48 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.64 Total: -55.10 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.29 Total: -14.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.30 -8.17 -39.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329271517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.743 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds