Wall clock time and date at job start Tue Mar 31 2020 11:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00166 * 2 1 4 4 C 1.46904 * 110.99832 * 123.95517 * 2 1 3 5 5 C 1.52998 * 109.54017 * 174.68632 * 4 2 1 6 6 N 1.46504 * 109.46964 * 305.18992 * 5 4 2 7 7 C 1.34783 * 119.99996 * 177.16806 * 6 5 4 8 8 O 1.21286 * 119.99511 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00158 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47261 * 39.99365 * 9 7 6 11 11 N 1.46896 * 109.47312 * 159.99681 * 9 7 6 12 12 C 1.53004 * 109.47043 * 279.99901 * 9 7 6 13 13 C 1.53006 * 109.47064 * 174.99920 * 12 9 7 14 14 C 1.50698 * 109.47200 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99519 * 359.72322 * 14 13 12 16 16 C 1.37872 * 120.00297 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99722 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46974 * 120.00436 * 18 16 14 21 21 H 1.48497 * 109.47267 * 240.00263 * 18 16 14 22 22 C 1.53180 * 109.61402 * 294.90628 * 4 2 1 23 23 C 1.53092 * 109.15969 * 176.89405 * 22 4 2 24 24 O 1.42903 * 109.41571 * 302.38792 * 23 22 4 25 25 C 1.42906 * 114.09453 * 61.15845 * 24 23 22 26 26 C 1.53089 * 109.42040 * 298.84321 * 25 24 23 27 27 H 1.08998 * 109.47342 * 290.54281 * 1 2 3 28 28 H 1.09005 * 109.47386 * 50.54141 * 1 2 3 29 29 H 1.09003 * 109.47618 * 170.54310 * 1 2 3 30 30 H 1.09000 * 109.47202 * 183.95942 * 3 2 1 31 31 H 1.09010 * 109.47018 * 303.95507 * 3 2 1 32 32 H 1.08994 * 109.47213 * 63.95379 * 3 2 1 33 33 H 1.08998 * 109.47095 * 185.19523 * 5 4 2 34 34 H 1.08999 * 109.47531 * 65.18685 * 5 4 2 35 35 H 0.97001 * 119.99880 * 357.16157 * 6 5 4 36 36 H 1.00902 * 110.99715 * 60.00271 * 11 9 7 37 37 H 1.00900 * 111.00257 * 183.95267 * 11 9 7 38 38 H 1.09004 * 109.46969 * 55.00108 * 12 9 7 39 39 H 1.08997 * 109.46962 * 294.99871 * 12 9 7 40 40 H 1.08997 * 109.46995 * 59.99570 * 13 12 9 41 41 H 1.09001 * 109.46847 * 300.00182 * 13 12 9 42 42 H 0.97003 * 119.99662 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.52379 * 296.80062 * 22 4 2 44 44 H 1.08994 * 109.52423 * 56.98633 * 22 4 2 45 45 H 1.09002 * 109.47971 * 182.40823 * 23 22 4 46 46 H 1.08999 * 109.48100 * 62.37369 * 23 22 4 47 47 H 1.09004 * 109.47965 * 178.85315 * 25 24 23 48 48 H 1.09007 * 109.49098 * 58.83298 * 25 24 23 49 49 H 1.09005 * 109.51908 * 297.70484 * 26 25 24 50 50 H 1.08995 * 109.52657 * 177.51521 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5191 -0.8563 1.0326 6 7 3.8865 -1.4146 -0.2712 7 6 5.1852 -1.5341 -0.6113 8 8 6.0497 -1.1790 0.1618 9 6 5.5632 -2.1088 -1.9520 10 1 4.8791 -1.7346 -2.7137 11 7 6.9360 -1.7079 -2.2873 12 6 5.4771 -3.6354 -1.8951 13 6 5.7390 -4.2133 -3.2874 14 6 5.6549 -5.7168 -3.2312 15 1 5.4409 -6.2110 -2.2951 16 6 5.8562 -6.4618 -4.3738 17 7 6.1221 -5.8601 -5.5127 18 14 5.7526 -8.3256 -4.3040 19 1 5.4437 -8.7525 -2.9157 20 1 4.6797 -8.7962 -5.2165 21 1 7.0515 -8.9097 -4.7245 22 6 1.6124 -0.0702 2.4474 23 6 2.0984 -0.9167 3.6268 24 8 1.5287 -2.2244 3.5397 25 6 1.8909 -2.9409 2.3575 26 6 1.3966 -2.1759 1.1270 27 1 -0.3634 0.3606 0.9623 28 1 -0.3634 0.6531 -0.7935 29 1 -0.3634 -1.0137 -0.1688 30 1 3.0828 1.3432 -0.0710 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 3.9003 -1.5011 1.8243 34 1 3.9501 0.1395 1.1358 35 1 3.1951 -1.6982 -0.8895 36 1 7.5897 -2.0433 -1.5957 37 1 7.1907 -2.0268 -3.2101 38 1 4.4828 -3.9310 -1.5601 39 1 6.2235 -4.0156 -1.1976 40 1 6.7332 -3.9176 -3.6224 41 1 4.9926 -3.8330 -3.9849 42 1 6.2641 -6.3843 -6.3164 43 1 2.0803 0.9134 2.4877 44 1 0.5291 0.0384 2.4989 45 1 1.7911 -0.4479 4.5617 46 1 3.1854 -0.9910 3.5974 47 1 1.4342 -3.9305 2.3780 48 1 2.9752 -3.0420 2.3113 49 1 0.3089 -2.1098 1.1519 50 1 1.7102 -2.6981 0.2232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329271517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:07 Heat of formation + Delta-G solvation = -107.831880 kcal Electronic energy + Delta-G solvation = -27989.858647 eV Core-core repulsion = 24243.702869 eV Total energy + Delta-G solvation = -3746.155778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84438 -40.49595 -38.19628 -37.05487 -35.47277 -34.81449 -32.98969 -32.25726 -31.66371 -29.49834 -28.29466 -27.32356 -26.00408 -24.94888 -24.54159 -23.33905 -22.34220 -21.07863 -19.65376 -18.80072 -18.08444 -17.85549 -17.18515 -17.09400 -16.59887 -16.47153 -16.21968 -15.83824 -15.71960 -15.54352 -15.32111 -15.19199 -14.76509 -14.64199 -14.38026 -14.34461 -13.94213 -13.60745 -13.39452 -13.29505 -12.98987 -12.93781 -12.86395 -12.67509 -12.59057 -12.48328 -12.20938 -12.00856 -11.80605 -11.77889 -11.69670 -11.26950 -11.22887 -10.72225 -10.60826 -10.55078 -10.00123 -9.62100 -9.24662 -8.20099 -6.30222 1.39563 1.41234 1.52912 1.66288 2.16243 2.41235 2.82537 2.94794 3.13746 3.45585 3.57999 3.77935 3.80901 3.89588 3.95056 4.15315 4.16827 4.19196 4.23688 4.28609 4.39515 4.44270 4.54274 4.60802 4.65656 4.67380 4.69246 4.70765 4.75803 4.83749 4.87073 5.00164 5.01378 5.08417 5.11017 5.11211 5.19656 5.47230 5.48811 5.67605 5.82434 6.01729 6.06442 6.09827 6.18872 6.22972 6.49443 6.60630 6.85501 7.28653 7.38927 8.90902 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003263 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.966839 B = 8578.256622 C = 9170.981778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.020 3.980 4 C 0.107 3.893 5 C 0.133 3.867 6 N -0.703 5.703 7 C 0.526 3.474 8 O -0.576 6.576 9 C 0.082 3.918 10 H 0.105 0.895 11 N -0.830 5.830 12 C -0.119 4.119 13 C 0.030 3.970 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.281 1.281 22 C -0.173 4.173 23 C 0.057 3.943 24 O -0.395 6.395 25 C 0.056 3.944 26 C -0.142 4.142 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.343 0.657 37 H 0.352 0.648 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.049 0.951 47 H 0.106 0.894 48 H 0.045 0.955 49 H 0.088 0.912 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 13.298 15.256 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.263 5.263 3 C -0.128 4.128 4 C 0.016 3.984 5 C 0.009 3.991 6 N -0.355 5.355 7 C 0.313 3.687 8 O -0.456 6.456 9 C -0.033 4.033 10 H 0.123 0.877 11 N -0.361 5.361 12 C -0.159 4.159 13 C -0.007 4.007 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.213 4.213 23 C -0.021 4.021 24 O -0.314 6.314 25 C -0.021 4.021 26 C -0.180 4.180 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.128 0.872 46 H 0.067 0.933 47 H 0.124 0.876 48 H 0.063 0.937 49 H 0.107 0.893 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.598 13.992 15.391 24.851 hybrid contribution 0.080 -1.577 -0.232 1.596 sum -13.518 12.416 15.159 23.805 Atomic orbital electron populations 1.22529 0.86151 1.03143 1.01104 1.62154 1.09025 1.14276 1.40855 1.22452 1.00387 0.88527 1.01456 1.21242 0.92491 0.94761 0.89856 1.21453 0.93930 0.98612 0.85090 1.45698 1.06710 1.63898 1.19193 1.20674 0.82639 0.77055 0.88367 1.90614 1.50253 1.51138 1.53559 1.21373 0.93492 0.93978 0.94460 0.87668 1.58754 1.02101 1.67125 1.08117 1.22115 1.01550 0.93155 0.99060 1.18968 0.95551 0.94530 0.91661 1.21643 1.48195 0.93360 0.94830 0.92678 1.25858 0.94792 1.03472 0.95184 1.70075 1.49257 1.37240 1.00134 0.85497 0.77776 0.79941 0.78432 1.18930 1.20278 1.20648 1.22751 1.03284 1.00373 0.94864 1.22703 0.97404 0.82788 0.99157 1.87923 1.73086 1.28629 1.41754 1.22708 0.99346 0.95992 0.84034 1.22296 1.02187 0.94245 0.99275 0.94455 0.90647 0.90746 0.92562 0.90542 0.94113 0.92008 0.92056 0.74878 0.84399 0.83342 0.91572 0.93788 0.98030 0.98007 0.92778 0.89528 0.89521 0.87154 0.93251 0.87553 0.93681 0.89345 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.75 127.69 1.12 1.34 16 2 N -0.54 -8.42 4.32 -897.99 -3.88 -12.30 16 3 C 0.02 0.29 8.82 127.69 1.13 1.42 16 4 C 0.11 1.73 0.11 3.65 0.00 1.73 16 5 C 0.13 2.89 3.52 86.38 0.30 3.20 16 6 N -0.70 -17.62 5.11 -463.05 -2.37 -19.98 16 7 C 0.53 17.15 7.08 87.65 0.62 17.77 16 8 O -0.58 -22.42 16.25 -3.05 -0.05 -22.47 16 9 C 0.08 2.79 3.21 44.17 0.14 2.93 16 10 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 11 N -0.83 -29.07 8.94 -171.81 -1.54 -30.61 16 12 C -0.12 -4.64 4.78 30.60 0.15 -4.49 16 13 C 0.03 1.48 4.74 29.85 0.14 1.62 16 14 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.30 5.46 84.65 0.46 0.76 16 17 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 18 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.17 -2.35 4.20 30.69 0.13 -2.23 16 23 C 0.06 0.86 6.57 72.01 0.47 1.34 16 24 O -0.39 -7.69 10.77 -148.98 -1.60 -9.30 16 25 C 0.06 1.02 6.57 72.01 0.47 1.49 16 26 C -0.14 -2.33 4.51 30.68 0.14 -2.19 16 27 H 0.04 0.41 6.16 -2.39 -0.01 0.40 16 28 H 0.07 0.85 8.03 -2.38 -0.02 0.83 16 29 H 0.07 0.92 6.50 -2.39 -0.02 0.90 16 30 H 0.06 1.04 6.46 -2.39 -0.02 1.03 16 31 H 0.08 1.04 8.06 -2.38 -0.02 1.03 16 32 H 0.04 0.51 6.37 -2.39 -0.02 0.49 16 33 H 0.06 1.47 5.03 -2.39 -0.01 1.46 16 34 H 0.06 1.43 6.72 -2.39 -0.02 1.42 16 35 H 0.41 9.47 7.30 -92.71 -0.68 8.79 16 36 H 0.34 12.26 8.58 -89.69 -0.77 11.49 16 37 H 0.35 12.48 7.55 -89.69 -0.68 11.81 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.00 0.07 6.87 -2.39 -0.02 0.06 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.09 1.06 6.59 -2.39 -0.02 1.05 16 44 H 0.09 1.11 6.30 -2.39 -0.02 1.09 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 0.82 6.72 -2.39 -0.02 0.80 16 47 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.04 0.92 6.49 -2.38 -0.02 0.91 16 49 H 0.09 1.30 6.30 -2.38 -0.02 1.28 16 50 H 0.08 1.43 7.09 -2.39 -0.02 1.41 16 Total: -1.00 -65.90 374.94 -2.77 -68.66 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -1.15 Total: 39.49 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.51 Total: -4.76 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -7.49 Total: -116.94 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.65 Total: -31.77 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.90 -2.77 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329271517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.169 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds