Wall clock time and date at job start Tue Mar 31 2020 11:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 119.99878 * 2 1 4 4 C 1.53004 * 109.47208 * 269.99732 * 3 2 1 5 5 C 1.53002 * 109.47176 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46893 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46893 * 179.97438 * 6 5 4 8 8 O 1.42907 * 109.47076 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00087 * 179.97438 * 2 1 3 10 10 O 1.21582 * 119.99936 * 179.97438 * 9 2 1 11 11 N 1.34778 * 119.99808 * 0.02562 * 9 2 1 12 12 C 1.46504 * 120.00011 * 180.02562 * 11 9 2 13 13 C 1.53352 * 109.41782 * 275.12821 * 12 11 9 14 14 C 1.53190 * 109.15070 * 178.67570 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46184 * 154.99596 * 12 11 9 26 26 H 1.09002 * 109.47356 * 269.99815 * 1 2 3 27 27 H 1.09001 * 109.47744 * 30.00025 * 1 2 3 28 28 H 1.09005 * 109.47269 * 150.00122 * 1 2 3 29 29 H 1.09000 * 109.47729 * 29.99883 * 3 2 1 30 30 H 1.09005 * 109.47301 * 150.00165 * 3 2 1 31 31 H 1.08997 * 109.47304 * 300.00364 * 4 3 2 32 32 H 1.09006 * 109.46966 * 60.00458 * 4 3 2 33 33 H 1.08997 * 109.47421 * 300.00438 * 5 4 3 34 34 H 1.09006 * 109.46679 * 60.00429 * 5 4 3 35 35 H 1.08997 * 109.47525 * 300.00472 * 6 5 4 36 36 H 1.09006 * 109.47028 * 60.00740 * 6 5 4 37 37 H 1.08997 * 109.47421 * 300.00536 * 7 6 5 38 38 H 1.08996 * 109.47194 * 60.00476 * 7 6 5 39 39 H 0.96697 * 113.99543 * 180.02562 * 8 7 6 40 40 H 0.97003 * 120.00299 * 359.97438 * 11 9 2 41 41 H 1.09008 * 109.45773 * 35.02385 * 12 11 9 42 42 H 1.09004 * 109.68561 * 58.70322 * 13 12 11 43 43 H 1.09004 * 109.47287 * 298.50983 * 13 12 11 44 44 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 45 45 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 46 46 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 48 48 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 49 49 H 1.09003 * 109.49698 * 61.43756 * 25 12 11 50 50 H 1.08994 * 109.52761 * 301.35170 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4425 6 6 3.4725 3.4770 -2.8850 7 6 4.2363 4.8027 -2.8850 8 8 4.4746 5.2152 -4.2323 9 6 2.1389 -1.1672 0.0005 10 8 3.3547 -1.1672 0.0001 11 7 1.4649 -2.3344 0.0005 12 6 2.1974 -3.6032 0.0017 13 6 2.5654 -3.9807 -1.4384 14 6 3.3594 -5.2907 -1.4272 15 7 2.5814 -6.3126 -0.7137 16 6 2.3088 -7.5188 -1.3019 17 1 2.2516 -7.5943 -2.3778 18 6 2.1062 -8.6445 -0.5153 19 7 1.4618 -9.6823 -1.0052 20 14 2.7482 -8.6864 1.2384 21 1 1.6836 -8.2272 2.1663 22 1 3.1444 -10.0743 1.5875 23 1 3.9270 -7.7909 1.3555 24 6 2.1010 -6.0155 0.6426 25 6 1.3194 -4.6983 0.6114 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.0415 0.9507 -1.9564 32 1 1.5000 1.8407 -1.9564 33 1 2.6275 3.7952 -0.9288 34 1 4.1693 2.9058 -0.9285 35 1 4.0621 2.7175 -3.3983 36 1 2.5202 3.6069 -3.3994 37 1 3.6463 5.5620 -2.3718 38 1 5.1885 4.6734 -2.3706 39 1 4.9562 6.0502 -4.3086 40 1 0.4949 -2.3344 0.0005 41 1 3.1075 -3.4965 0.5922 42 1 3.1724 -3.1910 -1.8813 43 1 1.6552 -4.1120 -2.0235 44 1 4.3118 -5.1363 -0.9199 45 1 3.5397 -5.6175 -2.4513 46 1 1.3199 -10.4687 -0.4554 47 1 1.4486 -6.8195 0.9834 48 1 2.9505 -5.9227 1.3191 49 1 0.4208 -4.8227 0.0070 50 1 1.0391 -4.4175 1.6265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344060062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:22 Heat of formation + Delta-G solvation = -92.618425 kcal Electronic energy + Delta-G solvation = -26621.661749 eV Core-core repulsion = 22876.165676 eV Total energy + Delta-G solvation = -3745.496073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38785 -39.44452 -38.26252 -37.14319 -36.06092 -35.39797 -34.00131 -32.07016 -31.94913 -30.82724 -27.81904 -27.10411 -25.86263 -24.50113 -23.63006 -22.82693 -22.01699 -21.25618 -20.80668 -19.23883 -18.56095 -18.24534 -17.69592 -17.07174 -16.90241 -16.58064 -15.96736 -15.80301 -15.57595 -15.35474 -15.19314 -14.98444 -14.79037 -14.49940 -14.33149 -14.00388 -13.82047 -13.59956 -13.58601 -13.46039 -13.22566 -12.74910 -12.58934 -12.51368 -12.30235 -12.25243 -12.12418 -12.02076 -11.84389 -11.77317 -11.56648 -11.47879 -11.37369 -11.18698 -10.88209 -10.71072 -10.13799 -9.47731 -8.97267 -8.16019 -5.48513 1.29599 1.43206 1.52072 1.66981 2.16541 2.41692 2.97210 3.05541 3.31680 3.33775 3.76978 3.92090 3.97976 4.08655 4.14439 4.16063 4.22394 4.28883 4.31305 4.46391 4.47580 4.51633 4.58007 4.61812 4.65916 4.69977 4.77593 4.84858 4.86761 4.89501 4.91740 4.93521 4.99599 5.02627 5.06162 5.15099 5.17918 5.33690 5.39589 5.40820 5.57071 5.63786 5.86591 5.96834 6.12797 6.89238 6.90241 6.99985 7.59608 7.60941 8.01793 9.03676 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.002333 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.994207 B =12000.192153 C =12553.309523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.633 5.633 3 C 0.132 3.868 4 C -0.127 4.127 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.073 3.927 8 O -0.602 6.602 9 C 0.697 3.303 10 O -0.634 6.634 11 N -0.729 5.729 12 C 0.178 3.822 13 C -0.126 4.126 14 C 0.147 3.853 15 N -0.618 5.618 16 C -0.248 4.248 17 H 0.052 0.948 18 C -0.034 4.034 19 N -0.955 5.955 20 Si 0.945 3.055 21 H -0.267 1.267 22 H -0.311 1.311 23 H -0.267 1.267 24 C 0.122 3.878 25 C -0.125 4.125 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.397 0.603 40 H 0.408 0.592 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.057 0.943 46 H 0.262 0.738 47 H 0.060 0.940 48 H 0.032 0.968 49 H 0.073 0.927 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 32.226 3.659 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.370 5.370 3 C 0.010 3.990 4 C -0.166 4.166 5 C -0.142 4.142 6 C -0.160 4.160 7 C -0.004 4.004 8 O -0.411 6.411 9 C 0.398 3.602 10 O -0.515 6.515 11 N -0.385 5.385 12 C 0.073 3.927 13 C -0.166 4.166 14 C 0.022 3.978 15 N -0.343 5.343 16 C -0.378 4.378 17 H 0.070 0.930 18 C -0.229 4.229 19 N -0.601 5.601 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.240 1.240 23 H -0.191 1.191 24 C -0.004 4.004 25 C -0.165 4.165 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.333 31.545 3.564 31.831 hybrid contribution 0.340 -0.436 0.452 0.715 sum -1.992 31.109 4.016 31.430 Atomic orbital electron populations 1.21977 0.77486 1.04390 1.03085 1.47152 1.07836 1.04263 1.77701 1.21445 0.97286 0.83476 0.96835 1.21869 1.00696 0.96914 0.97137 1.21342 1.00867 0.96530 0.95493 1.21521 1.00533 0.96235 0.97692 1.22279 0.99166 0.96161 0.82833 1.86440 1.80542 1.46017 1.28100 1.16156 0.85000 0.81409 0.77617 1.90879 1.13704 1.86946 1.59977 1.45274 1.10243 1.03817 1.79159 1.20566 0.94798 0.81438 0.95922 1.22249 1.00454 0.96950 0.96991 1.20992 0.92638 0.87872 0.96318 1.44502 1.61202 1.13747 1.14862 1.18851 1.41565 0.85404 0.91967 0.92988 1.25891 0.99791 0.95153 1.02028 1.69959 1.43436 1.07448 1.39257 0.85943 0.79747 0.75351 0.81611 1.19358 1.23981 1.19127 1.21377 0.96351 0.96331 0.86310 1.22144 0.98764 0.93782 1.01810 0.91122 0.88576 0.91134 0.87246 0.92037 0.94782 0.90882 0.89184 0.91843 0.93449 0.91593 0.91744 0.93019 0.75304 0.75439 0.91666 0.92175 0.92045 0.95395 0.92403 0.92897 0.92226 0.95046 0.90866 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.20 127.77 1.30 2.06 16 2 N -0.63 -12.05 2.87 -864.92 -2.48 -14.54 16 3 C 0.13 2.13 5.41 86.38 0.47 2.59 16 4 C -0.13 -2.03 5.54 30.60 0.17 -1.86 16 5 C -0.10 -1.25 5.21 30.59 0.16 -1.09 16 6 C -0.12 -1.80 5.58 30.59 0.17 -1.63 16 7 C 0.07 0.87 7.05 71.98 0.51 1.38 16 8 O -0.60 -8.97 13.66 -148.98 -2.04 -11.01 16 9 C 0.70 19.51 8.24 179.05 1.48 20.99 16 10 O -0.63 -23.55 15.58 -3.97 -0.06 -23.61 16 11 N -0.73 -18.54 4.94 -457.17 -2.26 -20.80 16 12 C 0.18 5.66 2.42 45.12 0.11 5.77 16 13 C -0.13 -4.40 5.68 30.78 0.17 -4.22 16 14 C 0.15 6.08 6.50 86.36 0.56 6.65 16 15 N -0.62 -29.53 2.77 -699.10 -1.94 -31.47 16 16 C -0.25 -14.21 10.03 84.03 0.84 -13.37 16 17 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 18 C -0.03 -1.98 5.23 84.86 0.44 -1.54 16 19 N -0.95 -59.97 13.97 21.65 0.30 -59.67 16 20 Si 0.94 46.59 24.34 68.60 1.67 48.26 16 21 H -0.27 -12.15 6.62 99.48 0.66 -11.49 16 22 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 23 H -0.27 -12.85 6.64 99.48 0.66 -12.19 16 24 C 0.12 5.09 4.21 86.36 0.36 5.45 16 25 C -0.13 -3.99 5.55 30.67 0.17 -3.82 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.58 8.07 -2.39 -0.02 0.57 16 28 H 0.07 0.71 6.36 -2.38 -0.02 0.69 16 29 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.06 1.29 7.42 -2.38 -0.02 1.28 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.40 2.06 9.12 -74.06 -0.68 1.38 16 40 H 0.41 7.82 6.33 -92.71 -0.59 7.24 16 41 H 0.07 2.35 7.58 -2.38 -0.02 2.33 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 46 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.06 2.70 4.50 -2.39 -0.01 2.69 16 48 H 0.03 1.30 7.07 -2.39 -0.02 1.29 16 49 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -78.29 388.18 -0.33 -78.62 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.44 Total: 16.85 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.92 Total: 17.36 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.38 Total: -126.47 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.10 Total: -34.62 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.26 kcal Total: -78.29 -0.33 -78.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344060062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.003 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds