Wall clock time and date at job start Tue Mar 31 2020 11:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47246 * 2 1 4 4 C 1.52997 * 109.46976 * 119.99823 * 2 1 3 5 5 N 1.46907 * 109.47133 * 176.02609 * 4 2 1 6 6 C 1.47012 * 111.00393 * 199.46611 * 5 4 2 7 7 C 1.53096 * 109.26122 * 177.60487 * 6 5 4 8 8 O 1.43014 * 109.25578 * 56.85173 * 7 6 5 9 9 C 1.43024 * 113.73673 * 301.32598 * 8 7 6 10 10 C 1.47015 * 110.99823 * 75.83128 * 5 4 2 11 11 N 1.46499 * 109.47210 * 240.00162 * 2 1 3 12 12 C 1.46501 * 119.99749 * 304.74777 * 11 2 1 13 13 C 1.34777 * 120.00219 * 124.75286 * 11 2 1 14 14 O 1.21280 * 119.99622 * 359.97438 * 13 11 2 15 15 C 1.50699 * 119.99931 * 180.02562 * 13 11 2 16 16 H 1.09002 * 109.46932 * 319.99700 * 15 13 11 17 17 N 1.46903 * 109.47064 * 200.00053 * 15 13 11 18 18 C 1.52995 * 109.47131 * 79.99708 * 15 13 11 19 19 C 1.53008 * 109.47024 * 184.99785 * 18 15 13 20 20 C 1.50693 * 109.47177 * 180.02562 * 19 18 15 21 21 H 1.08002 * 120.00099 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00330 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00385 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99465 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47041 * 90.00638 * 24 22 20 26 26 H 1.48504 * 109.47159 * 209.99973 * 24 22 20 27 27 H 1.48498 * 109.47311 * 330.00187 * 24 22 20 28 28 H 1.09002 * 109.46799 * 60.00022 * 1 2 3 29 29 H 1.08993 * 109.46600 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47082 * 300.00106 * 1 2 3 31 31 H 1.08998 * 109.47551 * 296.02151 * 4 2 1 32 32 H 1.08997 * 109.47238 * 56.02861 * 4 2 1 33 33 H 1.08998 * 109.50528 * 297.54425 * 6 5 4 34 34 H 1.09002 * 109.50091 * 57.67210 * 6 5 4 35 35 H 1.08999 * 109.50752 * 296.91969 * 7 6 5 36 36 H 1.08998 * 109.53978 * 176.80637 * 7 6 5 37 37 H 1.08995 * 109.51036 * 298.74044 * 9 8 7 38 38 H 1.08997 * 109.53971 * 178.62717 * 9 8 7 39 39 H 1.08998 * 109.50614 * 302.32454 * 10 5 4 40 40 H 1.08994 * 109.50772 * 62.46090 * 10 5 4 41 41 H 1.09006 * 109.46745 * 89.99921 * 12 11 2 42 42 H 1.08992 * 109.47240 * 209.99688 * 12 11 2 43 43 H 1.09002 * 109.47328 * 330.00393 * 12 11 2 44 44 H 1.00892 * 111.00071 * 176.04413 * 17 15 13 45 45 H 1.00900 * 110.99710 * 299.99871 * 17 15 13 46 46 H 1.08992 * 109.47257 * 305.00039 * 18 15 13 47 47 H 1.09000 * 109.46946 * 65.00345 * 18 15 13 48 48 H 1.08998 * 109.46932 * 299.99974 * 19 18 15 49 49 H 1.09000 * 109.46802 * 60.00472 * 19 18 15 50 50 H 0.97002 * 119.99851 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5059 -0.8049 1.2022 6 6 4.0028 -1.8563 2.1017 7 6 5.5258 -1.9493 1.9771 8 8 6.1016 -0.6725 2.2666 9 6 5.6403 0.3749 1.4088 10 6 4.1183 0.4914 1.5278 11 7 2.0184 -0.6906 -1.1962 12 6 1.5808 -2.0592 -1.4818 13 6 2.8703 -0.0668 -2.0338 14 8 3.2323 1.0663 -1.7975 15 6 3.3722 -0.7771 -3.2646 16 1 3.5817 -1.8191 -3.0227 17 7 4.6019 -0.1274 -3.7376 18 6 2.3069 -0.7122 -4.3608 19 6 2.7636 -1.5381 -5.5652 20 6 1.7147 -1.4737 -6.6452 21 1 0.8127 -0.9007 -6.4886 22 6 1.9063 -2.1463 -7.8334 23 7 0.9912 -2.0897 -8.7762 24 14 3.4667 -3.1368 -8.1047 25 1 3.2559 -4.5304 -7.6371 26 1 3.8023 -3.1455 -9.5513 27 1 4.5823 -2.5219 -7.3414 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7361 -0.1679 2.1378 32 1 1.6197 -1.7262 1.2856 33 1 3.7359 -1.6117 3.1298 34 1 3.5561 -2.8117 1.8265 35 1 5.7905 -2.2462 0.9623 36 1 5.9049 -2.6880 2.6832 37 1 5.9082 0.1454 0.3775 38 1 6.1016 1.3173 1.7037 39 1 3.7561 1.2496 0.8336 40 1 3.8534 0.7735 2.5467 41 1 0.6761 -2.0320 -2.0892 42 1 2.3662 -2.5863 -2.0232 43 1 1.3742 -2.5775 -0.5454 44 1 4.9938 -0.6238 -4.5237 45 1 4.4338 0.8403 -3.9684 46 1 1.3683 -1.1141 -3.9796 47 1 2.1615 0.3243 -4.6652 48 1 3.7023 -1.1361 -5.9465 49 1 2.9090 -2.5746 -5.2608 50 1 1.1263 -2.5626 -9.6123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356607104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:07 Heat of formation + Delta-G solvation = -76.186317 kcal Electronic energy + Delta-G solvation = -28214.056517 eV Core-core repulsion = 24469.272993 eV Total energy + Delta-G solvation = -3744.783524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25610 -39.38948 -36.99635 -35.50591 -35.06043 -32.80922 -31.83034 -31.30454 -30.27742 -28.20576 -26.86985 -26.75854 -24.71151 -24.18329 -23.78231 -21.10638 -20.59859 -20.11287 -18.72640 -17.53300 -16.81532 -16.75159 -16.32018 -15.94774 -15.49622 -15.27585 -15.08955 -14.61714 -14.43380 -14.30932 -14.21039 -13.97161 -13.61402 -13.17460 -13.14373 -12.83660 -12.68178 -12.51289 -12.37530 -12.25270 -12.10439 -11.89609 -11.69536 -11.63855 -11.50725 -11.29745 -10.93879 -10.86092 -10.67124 -10.28998 -10.03034 -9.87282 -9.83130 -9.30035 -9.23279 -8.62907 -8.61177 -8.39556 -8.22018 -6.11098 -4.10342 3.02127 3.11954 3.25206 3.33847 3.35445 3.51786 3.72510 4.38303 4.48659 4.70086 4.77117 4.85621 4.92427 4.98937 5.03854 5.07531 5.11987 5.13291 5.18345 5.22262 5.26013 5.36350 5.36772 5.45877 5.49510 5.52704 5.59226 5.65991 5.68816 5.72444 5.84025 5.88040 5.92532 6.00797 6.20676 6.37270 6.61106 6.69183 6.75833 6.83475 6.98211 7.12252 7.24200 7.39216 7.66155 7.69207 7.84060 8.45608 8.54611 8.93130 9.50466 11.02185 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003438 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.323527 B = 8142.901983 C = 8793.173228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.098 0.902 4 C 0.045 3.955 5 N -0.525 5.525 6 C 0.020 3.980 7 C 0.065 3.935 8 O -0.389 6.389 9 C 0.065 3.935 10 C 0.021 3.979 11 N -0.597 5.597 12 C 0.081 3.919 13 C 0.538 3.462 14 O -0.542 6.542 15 C 0.072 3.928 16 H 0.095 0.905 17 N -0.830 5.830 18 C -0.129 4.129 19 C -0.010 4.010 20 C -0.522 4.522 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.881 3.119 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.265 1.265 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.348 0.652 45 H 0.346 0.654 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.013 0.987 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 0.121 23.589 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.116 0.884 4 C -0.084 4.084 5 N -0.250 5.250 6 C -0.108 4.108 7 C -0.013 4.013 8 O -0.308 6.308 9 C -0.011 4.011 10 C -0.107 4.107 11 N -0.331 5.331 12 C -0.063 4.063 13 C 0.326 3.674 14 O -0.419 6.419 15 C -0.042 4.042 16 H 0.113 0.887 17 N -0.361 5.361 18 C -0.169 4.169 19 C -0.047 4.047 20 C -0.560 4.560 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.540 5.540 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.190 1.190 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.031 0.969 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.244 0.406 23.925 24.302 hybrid contribution -0.466 -0.476 -0.603 0.899 sum 3.778 -0.070 23.322 23.626 Atomic orbital electron populations 1.22105 0.94616 1.02575 1.02638 1.20955 0.93350 0.97949 0.83954 0.88416 1.22537 0.87628 1.01202 0.97006 1.62065 1.05861 1.05352 1.51684 1.22771 0.96937 0.96209 0.94867 1.22622 0.91323 0.85723 1.01595 1.87954 1.67315 1.17533 1.57994 1.22639 0.92575 0.90785 0.95139 1.22819 0.96056 0.92153 0.99711 1.47515 1.46758 1.15168 1.23610 1.21766 1.00725 0.82678 1.01101 1.20559 0.76980 0.86252 0.83586 1.90577 1.57445 1.18915 1.74944 1.21534 0.91589 0.98386 0.92730 0.88700 1.58742 1.27372 1.07413 1.42605 1.22186 0.97550 1.01650 0.95511 1.19560 0.97221 0.94557 0.93357 1.21070 1.04883 1.31564 0.98506 0.91122 1.25040 0.96385 0.96152 0.95863 1.69912 1.34408 1.43276 1.06421 0.86770 0.84278 0.80767 0.77389 1.20270 1.21361 1.18966 0.91588 0.92091 0.91746 0.93774 0.90542 0.94386 0.89863 0.92129 0.88772 0.91671 0.88689 0.88784 0.94612 0.92350 0.90708 0.91797 0.83749 0.84048 0.91928 0.92273 0.96674 0.96907 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.12 37.16 0.34 -1.10 16 2 C 0.14 1.55 2.65 -67.93 -0.18 1.37 16 3 H 0.10 1.27 5.81 -51.93 -0.30 0.97 16 4 C 0.05 0.41 4.35 -3.82 -0.02 0.40 16 5 N -0.52 -5.57 4.41 -234.31 -1.03 -6.60 16 6 C 0.02 0.19 5.60 -3.71 -0.02 0.16 16 7 C 0.06 0.63 7.01 37.21 0.26 0.89 16 8 O -0.39 -4.66 10.83 -35.23 -0.38 -5.04 16 9 C 0.07 0.75 7.01 37.21 0.26 1.01 16 10 C 0.02 0.23 5.47 -3.71 -0.02 0.21 16 11 N -0.60 -7.56 2.51 -173.93 -0.44 -8.00 16 12 C 0.08 0.87 8.45 59.85 0.51 1.37 16 13 C 0.54 8.57 6.93 -10.99 -0.08 8.50 16 14 O -0.54 -9.97 15.45 5.56 0.09 -9.89 16 15 C 0.07 1.18 2.47 -68.87 -0.17 1.01 16 16 H 0.10 1.47 6.31 -51.93 -0.33 1.14 16 17 N -0.83 -13.64 8.94 -5.65 -0.05 -13.69 16 18 C -0.13 -2.44 4.71 -26.73 -0.13 -2.57 16 19 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 20 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 21 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 24 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.37 7.99 -51.93 -0.41 -0.04 16 32 H 0.08 0.62 6.72 -51.93 -0.35 0.27 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.18 6.77 -51.93 -0.35 0.83 16 40 H 0.04 0.37 8.13 -51.93 -0.42 -0.05 16 41 H 0.06 0.64 7.65 -51.93 -0.40 0.25 16 42 H 0.07 0.84 5.94 -51.93 -0.31 0.53 16 43 H 0.06 0.54 6.76 -51.93 -0.35 0.19 16 44 H 0.35 5.60 7.55 -39.30 -0.30 5.30 16 45 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16 46 H 0.06 1.16 6.94 -51.93 -0.36 0.80 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 49 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 50 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -32.22 382.68 -8.42 -40.63 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.70 Total: 9.00 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.22 Total: -2.03 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.75 Total: -54.86 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.30 Total: -14.92 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.22 -8.42 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356607104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.552 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds