Wall clock time and date at job start Tue Mar 31 2020 11:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47246 * 2 1 4 4 C 1.52997 * 109.46976 * 119.99823 * 2 1 3 5 5 N 1.46907 * 109.47133 * 176.02609 * 4 2 1 6 6 C 1.47012 * 111.00393 * 199.46611 * 5 4 2 7 7 C 1.53096 * 109.26122 * 177.60487 * 6 5 4 8 8 O 1.43014 * 109.25578 * 56.85173 * 7 6 5 9 9 C 1.43024 * 113.73673 * 301.32598 * 8 7 6 10 10 C 1.47015 * 110.99823 * 75.83128 * 5 4 2 11 11 N 1.46499 * 109.47210 * 240.00162 * 2 1 3 12 12 C 1.46501 * 119.99749 * 304.74777 * 11 2 1 13 13 C 1.34777 * 120.00219 * 124.75286 * 11 2 1 14 14 O 1.21280 * 119.99622 * 359.97438 * 13 11 2 15 15 C 1.50699 * 119.99931 * 180.02562 * 13 11 2 16 16 H 1.09002 * 109.46932 * 319.99700 * 15 13 11 17 17 N 1.46903 * 109.47064 * 200.00053 * 15 13 11 18 18 C 1.52995 * 109.47131 * 79.99708 * 15 13 11 19 19 C 1.53008 * 109.47024 * 184.99785 * 18 15 13 20 20 C 1.50693 * 109.47177 * 180.02562 * 19 18 15 21 21 H 1.08002 * 120.00099 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00330 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00385 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99465 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47041 * 90.00638 * 24 22 20 26 26 H 1.48504 * 109.47159 * 209.99973 * 24 22 20 27 27 H 1.48498 * 109.47311 * 330.00187 * 24 22 20 28 28 H 1.09002 * 109.46799 * 60.00022 * 1 2 3 29 29 H 1.08993 * 109.46600 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47082 * 300.00106 * 1 2 3 31 31 H 1.08998 * 109.47551 * 296.02151 * 4 2 1 32 32 H 1.08997 * 109.47238 * 56.02861 * 4 2 1 33 33 H 1.08998 * 109.50528 * 297.54425 * 6 5 4 34 34 H 1.09002 * 109.50091 * 57.67210 * 6 5 4 35 35 H 1.08999 * 109.50752 * 296.91969 * 7 6 5 36 36 H 1.08998 * 109.53978 * 176.80637 * 7 6 5 37 37 H 1.08995 * 109.51036 * 298.74044 * 9 8 7 38 38 H 1.08997 * 109.53971 * 178.62717 * 9 8 7 39 39 H 1.08998 * 109.50614 * 302.32454 * 10 5 4 40 40 H 1.08994 * 109.50772 * 62.46090 * 10 5 4 41 41 H 1.09006 * 109.46745 * 89.99921 * 12 11 2 42 42 H 1.08992 * 109.47240 * 209.99688 * 12 11 2 43 43 H 1.09002 * 109.47328 * 330.00393 * 12 11 2 44 44 H 1.00892 * 111.00071 * 176.04413 * 17 15 13 45 45 H 1.00900 * 110.99710 * 299.99871 * 17 15 13 46 46 H 1.08992 * 109.47257 * 305.00039 * 18 15 13 47 47 H 1.09000 * 109.46946 * 65.00345 * 18 15 13 48 48 H 1.08998 * 109.46932 * 299.99974 * 19 18 15 49 49 H 1.09000 * 109.46802 * 60.00472 * 19 18 15 50 50 H 0.97002 * 119.99851 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5059 -0.8049 1.2022 6 6 4.0028 -1.8563 2.1017 7 6 5.5258 -1.9493 1.9771 8 8 6.1016 -0.6725 2.2666 9 6 5.6403 0.3749 1.4088 10 6 4.1183 0.4914 1.5278 11 7 2.0184 -0.6906 -1.1962 12 6 1.5808 -2.0592 -1.4818 13 6 2.8703 -0.0668 -2.0338 14 8 3.2323 1.0663 -1.7975 15 6 3.3722 -0.7771 -3.2646 16 1 3.5817 -1.8191 -3.0227 17 7 4.6019 -0.1274 -3.7376 18 6 2.3069 -0.7122 -4.3608 19 6 2.7636 -1.5381 -5.5652 20 6 1.7147 -1.4737 -6.6452 21 1 0.8127 -0.9007 -6.4886 22 6 1.9063 -2.1463 -7.8334 23 7 0.9912 -2.0897 -8.7762 24 14 3.4667 -3.1368 -8.1047 25 1 3.2559 -4.5304 -7.6371 26 1 3.8023 -3.1455 -9.5513 27 1 4.5823 -2.5219 -7.3414 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7361 -0.1679 2.1378 32 1 1.6197 -1.7262 1.2856 33 1 3.7359 -1.6117 3.1298 34 1 3.5561 -2.8117 1.8265 35 1 5.7905 -2.2462 0.9623 36 1 5.9049 -2.6880 2.6832 37 1 5.9082 0.1454 0.3775 38 1 6.1016 1.3173 1.7037 39 1 3.7561 1.2496 0.8336 40 1 3.8534 0.7735 2.5467 41 1 0.6761 -2.0320 -2.0892 42 1 2.3662 -2.5863 -2.0232 43 1 1.3742 -2.5775 -0.5454 44 1 4.9938 -0.6238 -4.5237 45 1 4.4338 0.8403 -3.9684 46 1 1.3683 -1.1141 -3.9796 47 1 2.1615 0.3243 -4.6652 48 1 3.7023 -1.1361 -5.9465 49 1 2.9090 -2.5746 -5.2608 50 1 1.1263 -2.5626 -9.6123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356607104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:06 Heat of formation + Delta-G solvation = -101.108491 kcal Electronic energy + Delta-G solvation = -28215.137223 eV Core-core repulsion = 24469.272993 eV Total energy + Delta-G solvation = -3745.864230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29689 -40.33212 -38.01264 -36.97560 -35.99104 -34.80686 -32.74046 -32.10911 -32.05459 -28.98343 -28.39293 -27.74122 -25.80022 -25.13150 -24.98541 -22.48945 -21.58621 -21.32414 -19.83995 -19.04001 -18.48810 -17.64074 -17.25689 -16.96641 -16.46373 -16.25509 -16.06650 -15.99653 -15.76795 -15.54253 -15.47343 -14.98173 -14.86284 -14.65652 -14.41283 -14.02054 -13.76789 -13.61582 -13.48552 -13.21215 -13.16602 -12.94901 -12.79206 -12.69560 -12.50977 -12.47304 -12.30995 -12.04385 -11.83650 -11.67154 -11.65414 -11.49297 -11.39571 -10.76624 -10.68627 -10.54578 -9.65012 -9.49643 -9.25862 -8.29329 -6.34612 1.38048 1.40657 1.51647 1.78792 2.09427 2.36685 2.74011 2.94417 3.06300 3.60636 3.74770 3.82257 3.95177 3.99529 4.07055 4.14071 4.18020 4.21015 4.26064 4.30019 4.35080 4.37973 4.55289 4.58808 4.62333 4.70622 4.72161 4.73237 4.77096 4.80545 4.82426 4.89594 4.94845 5.01805 5.02302 5.11225 5.26854 5.38048 5.47286 5.63263 5.69658 5.98782 6.05193 6.10008 6.16361 6.26022 6.49667 6.53988 6.73674 7.30236 7.35707 8.87498 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003438 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.323527 B = 8142.901983 C = 8793.173228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.072 0.928 4 C 0.051 3.949 5 N -0.541 5.541 6 C 0.025 3.975 7 C 0.059 3.941 8 O -0.403 6.403 9 C 0.069 3.931 10 C 0.028 3.972 11 N -0.589 5.589 12 C 0.075 3.925 13 C 0.531 3.469 14 O -0.574 6.574 15 C 0.082 3.918 16 H 0.111 0.889 17 N -0.829 5.829 18 C -0.116 4.116 19 C -0.004 4.004 20 C -0.533 4.533 21 H 0.026 0.974 22 C 0.004 3.996 23 N -0.953 5.953 24 Si 0.952 3.048 25 H -0.263 1.263 26 H -0.289 1.289 27 H -0.241 1.241 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.351 0.649 45 H 0.343 0.657 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.022 0.978 49 H 0.029 0.971 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -1.934 25.822 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.077 4.077 5 N -0.266 5.266 6 C -0.103 4.103 7 C -0.018 4.018 8 O -0.322 6.322 9 C -0.008 4.008 10 C -0.100 4.100 11 N -0.321 5.321 12 C -0.068 4.068 13 C 0.320 3.680 14 O -0.453 6.453 15 C -0.033 4.033 16 H 0.129 0.871 17 N -0.360 5.360 18 C -0.156 4.156 19 C -0.041 4.041 20 C -0.571 4.571 21 H 0.044 0.956 22 C -0.193 4.193 23 N -0.593 5.593 24 Si 0.775 3.225 25 H -0.188 1.188 26 H -0.216 1.216 27 H -0.164 1.164 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.166 0.834 45 H 0.156 0.844 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.047 0.953 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.171 -1.669 26.201 26.758 hybrid contribution -0.865 0.202 -1.281 1.559 sum 4.307 -1.467 24.919 25.331 Atomic orbital electron populations 1.22054 0.92977 1.03577 1.02633 1.21089 0.94517 0.96771 0.84049 0.91021 1.22504 0.86858 1.02161 0.96173 1.62046 1.06697 1.05308 1.52597 1.22789 0.96275 0.96397 0.94857 1.22810 0.92103 0.85197 1.01643 1.87935 1.67906 1.18382 1.58002 1.22582 0.93108 0.91295 0.93848 1.22655 0.95629 0.92254 0.99440 1.47570 1.45322 1.15835 1.23394 1.21941 1.00423 0.81611 1.02804 1.20493 0.77628 0.85931 0.83979 1.90567 1.58901 1.20139 1.75734 1.21443 0.90452 0.99407 0.92029 0.87087 1.58757 1.27286 1.07283 1.42690 1.21983 0.98626 0.99609 0.95334 1.19475 0.95694 0.96039 0.92898 1.21420 1.04748 1.30551 1.00349 0.95577 1.26054 1.00289 0.97550 0.95411 1.70079 1.37090 1.44927 1.07240 0.85629 0.79977 0.79459 0.77412 1.18783 1.21553 1.16384 0.93624 0.90507 0.89778 0.92511 0.88524 0.93802 0.88023 0.93301 0.86520 0.94018 0.87690 0.90816 0.93845 0.92606 0.90867 0.88691 0.83435 0.84434 0.91804 0.94472 0.95960 0.95266 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.12 71.98 0.66 -1.81 16 2 C 0.14 2.83 2.65 44.99 0.12 2.95 16 3 H 0.07 1.87 5.81 -2.38 -0.01 1.86 16 4 C 0.05 0.80 4.35 86.30 0.38 1.17 16 5 N -0.54 -10.37 4.41 -895.22 -3.94 -14.32 16 6 C 0.02 0.37 5.60 86.31 0.48 0.86 16 7 C 0.06 1.03 7.01 72.01 0.50 1.53 16 8 O -0.40 -9.16 10.83 -148.98 -1.61 -10.77 16 9 C 0.07 1.55 7.01 72.02 0.50 2.05 16 10 C 0.03 0.61 5.47 86.32 0.47 1.08 16 11 N -0.59 -14.12 2.51 -822.59 -2.06 -16.18 16 12 C 0.07 1.41 8.45 127.77 1.08 2.49 16 13 C 0.53 16.74 6.93 87.66 0.61 17.34 16 14 O -0.57 -21.48 15.45 -3.03 -0.05 -21.52 16 15 C 0.08 2.58 2.47 44.17 0.11 2.69 16 16 H 0.11 3.17 6.31 -2.39 -0.02 3.15 16 17 N -0.83 -26.54 8.94 -171.80 -1.54 -28.08 16 18 C -0.12 -4.35 4.71 30.60 0.14 -4.20 16 19 C 0.00 -0.16 3.81 29.85 0.11 -0.04 16 20 C -0.53 -29.95 9.66 25.60 0.25 -29.70 16 21 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 22 C 0.00 0.21 5.47 84.65 0.46 0.67 16 23 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 24 Si 0.95 42.62 27.47 68.60 1.88 44.50 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.99 7.56 -2.39 -0.02 0.98 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.78 7.99 -2.39 -0.02 0.76 16 32 H 0.10 1.13 6.72 -2.39 -0.02 1.12 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 1.18 8.02 -2.39 -0.02 1.16 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 1.89 6.77 -2.39 -0.02 1.87 16 40 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 41 H 0.06 1.12 7.65 -2.38 -0.02 1.10 16 42 H 0.07 1.44 5.94 -2.39 -0.01 1.42 16 43 H 0.09 1.22 6.76 -2.39 -0.02 1.20 16 44 H 0.35 10.70 7.55 -89.70 -0.68 10.03 16 45 H 0.34 11.52 8.58 -89.69 -0.77 10.75 16 46 H 0.06 2.35 6.94 -2.39 -0.02 2.34 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.02 0.95 5.93 -2.39 -0.01 0.93 16 49 H 0.03 1.19 7.57 -2.39 -0.02 1.18 16 50 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.84 382.68 -1.70 -73.55 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.57 Total: 34.65 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.88 Total: -2.92 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -7.24 Total: -117.48 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.66 Total: -32.30 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Total: -71.84 -1.70 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356607104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.562 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds