Wall clock time and date at job start Tue Mar 31 2020 11:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46802 * 2 1 4 4 C 1.52997 * 109.47175 * 239.99766 * 2 1 3 5 5 C 1.50698 * 109.47177 * 64.99884 * 4 2 1 6 6 H 1.08007 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00395 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99483 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47042 * 59.99936 * 9 7 5 11 11 H 1.48506 * 109.46669 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47028 * 299.99941 * 9 7 5 13 13 C 1.52995 * 109.46804 * 119.99633 * 2 1 3 14 14 N 1.46896 * 109.47444 * 301.30209 * 13 2 1 15 15 C 1.46906 * 111.00251 * 287.16071 * 14 13 2 16 16 C 1.52993 * 117.49738 * 140.99141 * 15 14 13 17 17 C 1.52993 * 60.00098 * 252.51528 * 16 15 14 18 18 C 1.46910 * 111.00043 * 163.20815 * 14 13 2 19 19 H 1.08997 * 109.21615 * 175.07786 * 18 14 13 20 20 C 1.52727 * 109.25132 * 55.63358 * 18 14 13 21 21 C 1.53319 * 108.39087 * 188.61018 * 20 18 14 22 22 C 1.52736 * 108.38981 * 69.85838 * 21 20 18 23 23 C 1.50631 * 110.58719 * 308.90201 * 22 21 20 24 24 C 1.38914 * 117.75300 * 197.71830 * 23 22 21 25 25 C 1.37930 * 120.54547 * 180.21349 * 24 23 22 26 26 C 1.38269 * 119.77295 * 0.06271 * 25 24 23 27 27 C 1.37937 * 119.76921 * 359.88498 * 26 25 24 28 28 C 1.37663 * 122.56618 * 17.78730 * 23 22 21 29 29 H 1.09002 * 109.46855 * 60.00335 * 1 2 3 30 30 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46986 * 299.99983 * 1 2 3 32 32 H 1.08998 * 109.47367 * 185.00116 * 4 2 1 33 33 H 1.08999 * 109.47082 * 305.00087 * 4 2 1 34 34 H 0.97001 * 119.99949 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46965 * 181.30235 * 13 2 1 36 36 H 1.08996 * 109.47484 * 61.30843 * 13 2 1 37 37 H 1.08995 * 115.55193 * 286.70807 * 15 14 13 38 38 H 1.09003 * 117.50459 * 0.02562 * 16 15 14 39 39 H 1.09005 * 117.49808 * 145.02319 * 16 15 14 40 40 H 1.09003 * 117.49677 * 252.51043 * 17 16 15 41 41 H 1.09004 * 117.49440 * 107.49408 * 17 16 15 42 42 H 1.09007 * 109.68373 * 68.88286 * 20 18 14 43 43 H 1.08999 * 109.67205 * 308.33559 * 20 18 14 44 44 H 1.09004 * 109.68267 * 310.13425 * 21 20 18 45 45 H 1.08998 * 109.68283 * 189.58655 * 21 20 18 46 46 H 1.09000 * 109.25219 * 69.18922 * 22 21 20 47 47 H 1.09000 * 109.25080 * 188.61380 * 22 21 20 48 48 H 1.08001 * 119.72608 * 0.24868 * 24 23 22 49 49 H 1.07996 * 120.11736 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.11730 * 179.85735 * 26 25 24 51 51 H 1.07999 * 119.72738 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0919 1.9226 -5.1872 11 1 1.9927 -0.1382 -6.4621 12 1 0.0189 0.6703 -5.3089 13 6 2.0400 -0.7212 1.2493 14 7 1.5248 -0.0471 2.4484 15 6 2.2026 1.2387 2.6618 16 6 1.3528 2.4122 3.1531 17 6 1.8581 2.3854 1.7093 18 6 1.6480 -0.9097 3.6312 19 1 1.3401 -0.3520 4.5156 20 6 3.1042 -1.3417 3.7900 21 6 3.1757 -2.4062 4.8910 22 6 2.5166 -3.6822 4.3712 23 6 1.1504 -3.3827 3.8120 24 6 0.2719 -4.4459 3.6465 25 6 -0.9921 -4.2378 3.1351 26 6 -1.3885 -2.9609 2.7827 27 6 -0.5180 -1.9036 2.9473 28 6 0.7542 -2.1107 3.4652 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.9222 -1.8428 -4.7317 35 1 3.1298 -0.7010 1.2611 36 1 1.6960 -1.7553 1.2377 37 1 3.2293 1.1749 3.0219 38 1 0.2908 2.2302 3.3185 39 1 1.8203 3.1207 3.8370 40 1 2.6581 3.0762 1.4432 41 1 1.1284 2.1858 0.9244 42 1 3.7137 -0.4824 4.0700 43 1 3.4674 -1.7596 2.8511 44 1 2.6466 -2.0544 5.7767 45 1 4.2176 -2.6067 5.1408 46 1 3.1389 -4.1145 3.5876 47 1 2.4217 -4.3965 5.1890 48 1 0.5809 -5.4437 3.9211 49 1 -1.6697 -5.0694 3.0097 50 1 -2.3761 -2.7919 2.3796 51 1 -0.8282 -0.9066 2.6715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461936218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:20 Heat of formation + Delta-G solvation = 37.767351 kcal Electronic energy + Delta-G solvation = -27486.427322 eV Core-core repulsion = 24157.434463 eV Total energy + Delta-G solvation = -3328.992859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43546 -38.30866 -35.91398 -35.01593 -33.66081 -32.06758 -30.54030 -30.14646 -27.94427 -26.67726 -25.48715 -23.42087 -22.82529 -22.66325 -22.21354 -21.70828 -20.04716 -19.38903 -18.53474 -16.50549 -16.27553 -15.85025 -15.38237 -15.30063 -14.76968 -14.66575 -14.35070 -14.00152 -13.84809 -13.37129 -13.21360 -12.98406 -12.71662 -12.52426 -12.37637 -12.17330 -11.97572 -11.56074 -11.46965 -11.38596 -11.21557 -11.10963 -10.96250 -10.82069 -10.71721 -10.54274 -10.36881 -10.32461 -10.17228 -10.07810 -9.84114 -9.34569 -9.00208 -8.88746 -8.53139 -8.40602 -8.26992 -7.94877 -5.92506 -3.93215 1.51721 1.59803 3.36858 3.41214 3.43600 3.86238 4.01299 4.10212 4.51849 4.66966 4.70759 4.88286 5.04174 5.12736 5.18229 5.19362 5.24528 5.29187 5.39113 5.43018 5.44034 5.53826 5.58207 5.65950 5.71621 5.80918 5.84056 5.88205 5.96689 5.96837 6.03859 6.08854 6.19979 6.24832 6.27673 6.29569 6.31983 6.45902 6.50186 6.62109 6.66389 6.73931 6.79656 6.84443 7.12952 7.19225 7.26985 7.29367 7.46839 7.52879 7.76196 7.94441 8.08757 8.52839 9.13153 9.69691 11.19079 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.004288 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.974066 B = 6527.940525 C = 7389.433389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.509 4.509 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.498 5.498 15 C 0.007 3.993 16 C -0.171 4.171 17 C -0.167 4.167 18 C 0.131 3.869 19 H 0.086 0.914 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.080 4.080 23 C -0.076 4.076 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.084 4.084 28 C -0.068 4.068 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.010 0.990 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -0.851 19.925 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.061 4.061 14 N -0.220 5.220 15 C -0.102 4.102 16 C -0.209 4.209 17 C -0.204 4.204 18 C 0.022 3.978 19 H 0.104 0.896 20 C -0.193 4.193 21 C -0.151 4.151 22 C -0.117 4.117 23 C -0.076 4.076 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.102 4.102 28 C -0.069 4.069 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.998 -0.867 19.704 19.950 hybrid contribution 0.674 0.104 -0.956 1.175 sum -2.324 -0.762 18.748 18.907 Atomic orbital electron populations 1.21592 0.96074 1.00420 0.99716 1.21394 0.95731 0.99823 0.93586 0.91485 1.19092 0.95722 0.95462 0.90590 1.21186 1.34422 1.08136 0.90981 0.92722 1.25008 0.95413 0.95076 0.98998 1.69962 1.39186 1.21253 1.23343 0.86728 0.78885 0.80130 0.82668 1.20348 1.21433 1.20315 1.22263 0.96602 0.98028 0.89229 1.62060 1.55375 1.02127 1.02423 1.22273 0.95644 0.86616 1.05667 1.22987 1.00326 0.99933 0.97644 1.23252 1.03968 0.99499 0.93723 1.20401 0.92207 0.91226 0.93922 0.89610 1.22272 0.98000 0.99033 1.00038 1.21465 1.00364 0.95088 0.98174 1.20467 0.93160 0.97958 1.00156 1.19572 0.95681 0.92634 0.99724 1.21022 0.94150 0.98132 1.01520 1.21019 0.96282 0.97051 0.99426 1.21106 0.99895 0.93037 1.00801 1.21255 0.92740 0.99736 0.96473 1.19410 0.94906 0.92982 0.99580 0.93131 0.94290 0.93983 0.97209 0.96891 0.93139 0.95305 0.91326 0.90124 0.88581 0.89556 0.89153 0.86614 0.91654 0.90754 0.91811 0.91718 0.90711 0.91119 0.86699 0.86597 0.86402 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.31 37.16 0.31 -2.02 16 2 C -0.09 -1.76 1.87 -90.62 -0.17 -1.93 16 3 H 0.07 1.37 4.86 -51.93 -0.25 1.11 16 4 C 0.03 0.75 4.45 -27.89 -0.12 0.63 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.07 1.15 3.10 -3.83 -0.01 1.14 16 14 N -0.50 -7.09 2.86 -220.32 -0.63 -7.72 16 15 C 0.01 0.09 4.59 -67.72 -0.31 -0.22 16 16 C -0.17 -2.00 10.46 -26.74 -0.28 -2.28 16 17 C -0.17 -2.29 8.61 -26.74 -0.23 -2.52 16 18 C 0.13 1.67 2.20 -69.03 -0.15 1.52 16 19 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 20 C -0.15 -1.83 4.66 -26.71 -0.12 -1.95 16 21 C -0.11 -1.13 5.98 -26.70 -0.16 -1.29 16 22 C -0.08 -0.86 5.67 -28.05 -0.16 -1.02 16 23 C -0.08 -0.97 5.74 -104.61 -0.60 -1.57 16 24 C -0.13 -1.60 9.61 -39.44 -0.38 -1.98 16 25 C -0.12 -1.48 10.05 -39.68 -0.40 -1.88 16 26 C -0.13 -1.71 10.05 -39.68 -0.40 -2.11 16 27 C -0.08 -1.18 9.01 -39.44 -0.36 -1.53 16 28 C -0.07 -0.93 4.16 -104.62 -0.44 -1.37 16 29 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.71 6.94 -51.93 -0.36 0.35 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.03 0.53 6.98 -51.93 -0.36 0.16 16 36 H 0.07 1.31 6.76 -51.93 -0.35 0.96 16 37 H 0.08 1.05 6.85 -51.93 -0.36 0.69 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.12 1.81 5.35 -51.93 -0.28 1.54 16 42 H 0.06 0.73 6.98 -51.93 -0.36 0.37 16 43 H 0.07 1.03 6.22 -51.93 -0.32 0.70 16 44 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.11 1.18 8.05 -52.49 -0.42 0.75 16 49 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 50 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 51 H 0.13 1.89 7.33 -52.49 -0.38 1.50 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -29.75 383.58 -12.31 -42.06 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.81 Total: 3.08 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: -4.37 Total: -33.48 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.11 Total: -34.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.75 -12.31 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461936218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.826 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds