Wall clock time and date at job start Tue Mar 31 2020 11:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46802 * 2 1 4 4 C 1.52997 * 109.47175 * 239.99766 * 2 1 3 5 5 C 1.50698 * 109.47177 * 64.99884 * 4 2 1 6 6 H 1.08007 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00395 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99483 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47042 * 59.99936 * 9 7 5 11 11 H 1.48506 * 109.46669 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47028 * 299.99941 * 9 7 5 13 13 C 1.52995 * 109.46804 * 119.99633 * 2 1 3 14 14 N 1.46896 * 109.47444 * 301.30209 * 13 2 1 15 15 C 1.46906 * 111.00251 * 287.16071 * 14 13 2 16 16 C 1.52993 * 117.49738 * 140.99141 * 15 14 13 17 17 C 1.52993 * 60.00098 * 252.51528 * 16 15 14 18 18 C 1.46910 * 111.00043 * 163.20815 * 14 13 2 19 19 H 1.08997 * 109.21615 * 175.07786 * 18 14 13 20 20 C 1.52727 * 109.25132 * 55.63358 * 18 14 13 21 21 C 1.53319 * 108.39087 * 188.61018 * 20 18 14 22 22 C 1.52736 * 108.38981 * 69.85838 * 21 20 18 23 23 C 1.50631 * 110.58719 * 308.90201 * 22 21 20 24 24 C 1.38914 * 117.75300 * 197.71830 * 23 22 21 25 25 C 1.37930 * 120.54547 * 180.21349 * 24 23 22 26 26 C 1.38269 * 119.77295 * 0.06271 * 25 24 23 27 27 C 1.37937 * 119.76921 * 359.88498 * 26 25 24 28 28 C 1.37663 * 122.56618 * 17.78730 * 23 22 21 29 29 H 1.09002 * 109.46855 * 60.00335 * 1 2 3 30 30 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46986 * 299.99983 * 1 2 3 32 32 H 1.08998 * 109.47367 * 185.00116 * 4 2 1 33 33 H 1.08999 * 109.47082 * 305.00087 * 4 2 1 34 34 H 0.97001 * 119.99949 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46965 * 181.30235 * 13 2 1 36 36 H 1.08996 * 109.47484 * 61.30843 * 13 2 1 37 37 H 1.08995 * 115.55193 * 286.70807 * 15 14 13 38 38 H 1.09003 * 117.50459 * 0.02562 * 16 15 14 39 39 H 1.09005 * 117.49808 * 145.02319 * 16 15 14 40 40 H 1.09003 * 117.49677 * 252.51043 * 17 16 15 41 41 H 1.09004 * 117.49440 * 107.49408 * 17 16 15 42 42 H 1.09007 * 109.68373 * 68.88286 * 20 18 14 43 43 H 1.08999 * 109.67205 * 308.33559 * 20 18 14 44 44 H 1.09004 * 109.68267 * 310.13425 * 21 20 18 45 45 H 1.08998 * 109.68283 * 189.58655 * 21 20 18 46 46 H 1.09000 * 109.25219 * 69.18922 * 22 21 20 47 47 H 1.09000 * 109.25080 * 188.61380 * 22 21 20 48 48 H 1.08001 * 119.72608 * 0.24868 * 24 23 22 49 49 H 1.07996 * 120.11736 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.11730 * 179.85735 * 26 25 24 51 51 H 1.07999 * 119.72738 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0919 1.9226 -5.1872 11 1 1.9927 -0.1382 -6.4621 12 1 0.0189 0.6703 -5.3089 13 6 2.0400 -0.7212 1.2493 14 7 1.5248 -0.0471 2.4484 15 6 2.2026 1.2387 2.6618 16 6 1.3528 2.4122 3.1531 17 6 1.8581 2.3854 1.7093 18 6 1.6480 -0.9097 3.6312 19 1 1.3401 -0.3520 4.5156 20 6 3.1042 -1.3417 3.7900 21 6 3.1757 -2.4062 4.8910 22 6 2.5166 -3.6822 4.3712 23 6 1.1504 -3.3827 3.8120 24 6 0.2719 -4.4459 3.6465 25 6 -0.9921 -4.2378 3.1351 26 6 -1.3885 -2.9609 2.7827 27 6 -0.5180 -1.9036 2.9473 28 6 0.7542 -2.1107 3.4652 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.9222 -1.8428 -4.7317 35 1 3.1298 -0.7010 1.2611 36 1 1.6960 -1.7553 1.2377 37 1 3.2293 1.1749 3.0219 38 1 0.2908 2.2302 3.3185 39 1 1.8203 3.1207 3.8370 40 1 2.6581 3.0762 1.4432 41 1 1.1284 2.1858 0.9244 42 1 3.7137 -0.4824 4.0700 43 1 3.4674 -1.7596 2.8511 44 1 2.6466 -2.0544 5.7767 45 1 4.2176 -2.6067 5.1408 46 1 3.1389 -4.1145 3.5876 47 1 2.4217 -4.3965 5.1890 48 1 0.5809 -5.4437 3.9211 49 1 -1.6697 -5.0694 3.0097 50 1 -2.3761 -2.7919 2.3796 51 1 -0.8282 -0.9066 2.6715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461936218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:19 Heat of formation + Delta-G solvation = 25.352026 kcal Electronic energy + Delta-G solvation = -27486.965691 eV Core-core repulsion = 24157.434463 eV Total energy + Delta-G solvation = -3329.531228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47099 -39.43630 -36.94747 -36.58969 -34.93388 -33.98255 -31.67366 -31.09002 -29.33837 -28.38736 -26.95780 -24.92093 -24.21606 -23.63881 -23.25316 -22.71064 -21.24224 -20.80401 -19.73181 -18.42303 -17.53148 -17.00837 -16.53091 -16.35956 -16.31255 -16.00894 -15.65458 -15.14445 -15.02896 -14.47954 -14.40047 -14.23268 -14.12771 -14.01374 -13.65788 -13.45405 -13.21265 -13.08383 -12.78183 -12.74053 -12.61516 -12.40839 -12.28726 -12.23135 -12.11740 -12.03759 -11.79090 -11.71106 -11.44599 -11.19512 -11.11875 -11.03769 -10.74244 -10.71793 -10.49488 -9.54029 -9.39602 -9.12937 -8.16083 -6.25218 0.52726 0.59845 1.39258 1.42349 1.49819 2.42132 2.79159 2.94802 3.06892 3.17171 3.71613 3.81400 3.97789 4.08084 4.12716 4.16276 4.21975 4.22950 4.27245 4.32265 4.36501 4.49695 4.53664 4.60027 4.62754 4.68879 4.77136 4.78515 4.90564 4.93073 4.94488 5.01081 5.03975 5.08580 5.13886 5.15039 5.21459 5.24993 5.32375 5.34630 5.39799 5.42962 5.51238 5.53244 5.59352 5.69261 5.73565 5.78905 5.85621 5.93037 6.16310 6.22679 6.34192 6.36525 6.90676 7.42911 8.96061 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.004288 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.974066 B = 6527.940525 C = 7389.433389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.076 4.076 3 H 0.071 0.929 4 C 0.037 3.963 5 C -0.524 4.524 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.087 3.913 14 N -0.494 5.494 15 C -0.007 4.007 16 C -0.141 4.141 17 C -0.184 4.184 18 C 0.134 3.866 19 H 0.099 0.901 20 C -0.151 4.151 21 C -0.107 4.107 22 C -0.080 4.080 23 C -0.087 4.087 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.144 4.144 27 C -0.100 4.100 28 C -0.083 4.083 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.067 0.933 32 H -0.020 1.020 33 H -0.021 1.021 34 H 0.261 0.739 35 H 0.017 0.983 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.128 0.872 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 0.152 21.552 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.001 4.001 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.041 4.041 14 N -0.217 5.217 15 C -0.115 4.115 16 C -0.179 4.179 17 C -0.221 4.221 18 C 0.026 3.974 19 H 0.117 0.883 20 C -0.190 4.190 21 C -0.145 4.145 22 C -0.117 4.117 23 C -0.088 4.088 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.162 4.162 27 C -0.118 4.118 28 C -0.084 4.084 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.086 0.914 32 H -0.002 1.002 33 H -0.002 1.002 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.146 0.854 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.421 0.150 21.353 21.625 hybrid contribution 0.801 -0.250 -1.438 1.665 sum -2.620 -0.100 19.915 20.086 Atomic orbital electron populations 1.21427 0.95006 0.99714 1.00064 1.21209 0.96403 0.99433 0.92449 0.91054 1.18968 0.93606 0.94287 0.93223 1.21573 1.34238 1.08433 0.91925 0.92063 1.25948 0.95281 0.96062 1.02621 1.70112 1.40441 1.23049 1.24214 0.85588 0.78929 0.78862 0.78221 1.19087 1.21089 1.19269 1.21822 0.95592 0.96824 0.89835 1.61963 1.55172 1.02635 1.01881 1.22405 0.96547 0.86165 1.06387 1.23027 1.00204 0.98461 0.96192 1.23206 1.04164 1.00313 0.94453 1.20445 0.92791 0.90898 0.93249 0.88317 1.22214 0.97192 0.99961 0.99635 1.21450 1.01447 0.93971 0.97599 1.20517 0.91820 0.98829 1.00548 1.19906 0.96815 0.92494 0.99545 1.21361 0.94081 0.99073 1.01060 1.21329 0.96856 0.97373 0.98915 1.21337 1.00431 0.93393 1.01066 1.21298 0.93412 0.99704 0.97429 1.19585 0.94955 0.93772 1.00068 0.94762 0.95455 0.91425 1.00214 1.00224 0.93045 0.96476 0.93240 0.89404 0.88496 0.87013 0.88468 0.88832 0.90714 0.93317 0.90689 0.90153 0.91452 0.89004 0.84618 0.84544 0.85386 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.14 8.31 71.99 0.60 -3.54 16 2 C -0.08 -3.21 1.87 -10.79 -0.02 -3.23 16 3 H 0.07 2.97 4.86 -2.39 -0.01 2.96 16 4 C 0.04 2.01 4.45 29.85 0.13 2.14 16 5 C -0.52 -30.22 8.41 25.60 0.22 -30.01 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 C 0.09 3.16 3.10 86.30 0.27 3.43 16 14 N -0.49 -13.91 2.86 -850.95 -2.43 -16.34 16 15 C -0.01 -0.16 4.59 44.91 0.21 0.04 16 16 C -0.14 -2.93 10.46 30.59 0.32 -2.61 16 17 C -0.18 -4.83 8.61 30.59 0.26 -4.56 16 18 C 0.13 3.30 2.20 44.05 0.10 3.39 16 19 H 0.10 2.21 8.09 -2.39 -0.02 2.19 16 20 C -0.15 -3.43 4.66 30.61 0.14 -3.29 16 21 C -0.11 -1.91 5.98 30.61 0.18 -1.73 16 22 C -0.08 -1.59 5.67 29.74 0.17 -1.42 16 23 C -0.09 -2.16 5.74 -19.86 -0.11 -2.28 16 24 C -0.14 -3.24 9.61 22.36 0.21 -3.03 16 25 C -0.13 -3.03 10.05 22.20 0.22 -2.81 16 26 C -0.14 -3.77 10.05 22.21 0.22 -3.55 16 27 C -0.10 -2.82 9.01 22.36 0.20 -2.61 16 28 C -0.08 -2.24 4.16 -19.86 -0.08 -2.32 16 29 H 0.03 1.43 6.95 -2.39 -0.02 1.41 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 2.30 6.94 -2.39 -0.02 2.28 16 32 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 33 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.02 0.65 6.98 -2.39 -0.02 0.64 16 36 H 0.05 1.98 6.76 -2.39 -0.02 1.97 16 37 H 0.09 2.12 6.85 -2.39 -0.02 2.11 16 38 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.09 2.89 5.35 -2.38 -0.01 2.88 16 42 H 0.07 1.54 6.98 -2.38 -0.02 1.52 16 43 H 0.05 1.36 6.22 -2.39 -0.01 1.35 16 44 H 0.07 1.21 8.10 -2.38 -0.02 1.19 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 48 H 0.14 2.52 8.05 -2.91 -0.02 2.50 16 49 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 50 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 51 H 0.12 3.56 7.33 -2.91 -0.02 3.54 16 Total: -1.00 -66.06 383.58 4.47 -61.60 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.89 Total: 23.53 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 3.70 Total: -57.63 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.15 Total: -74.77 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.06 4.47 -61.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461936218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.948 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds