Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47426 * 2 1 4 4 C 1.53002 * 109.46948 * 119.99586 * 2 1 3 5 5 C 1.50699 * 109.47306 * 184.99971 * 4 2 1 6 6 H 1.08006 * 120.00079 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00254 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00360 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46829 * 89.99897 * 9 7 5 11 11 H 1.48493 * 109.47335 * 210.00083 * 9 7 5 12 12 H 1.48495 * 109.46704 * 330.00343 * 9 7 5 13 13 N 1.46892 * 109.47571 * 239.99700 * 2 1 3 14 14 C 1.47577 * 110.99890 * 325.51012 * 13 2 1 15 15 C 1.52990 * 87.79662 * 138.30016 * 14 13 2 16 16 C 1.52531 * 114.05474 * 88.12021 * 15 14 13 17 17 C 1.53178 * 109.25557 * 76.82451 * 16 15 14 18 18 C 1.52966 * 109.41649 * 57.54795 * 17 16 15 19 19 C 1.52977 * 109.72329 * 298.19859 * 18 17 16 20 20 C 1.52534 * 114.04299 * 220.50325 * 15 14 13 21 21 C 1.47576 * 111.00344 * 61.60864 * 13 2 1 22 22 H 1.09009 * 113.49523 * 336.43030 * 21 13 2 23 23 C 1.50699 * 113.49902 * 106.89434 * 21 13 2 24 24 C 1.38240 * 119.99851 * 20.22919 * 23 21 13 25 25 C 1.38238 * 120.00145 * 179.78811 * 24 23 21 26 26 C 1.38234 * 119.99546 * 0.45966 * 25 24 23 27 27 C 1.38234 * 120.00476 * 359.76933 * 26 25 24 28 28 C 1.38230 * 119.99663 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47151 * 189.98180 * 1 2 3 30 30 H 1.09005 * 109.46520 * 69.98523 * 1 2 3 31 31 H 1.08999 * 109.46857 * 309.99186 * 1 2 3 32 32 H 1.09000 * 109.47424 * 305.00240 * 4 2 1 33 33 H 1.09003 * 109.46985 * 65.00122 * 4 2 1 34 34 H 0.96999 * 120.00618 * 180.02562 * 8 7 5 35 35 H 1.08999 * 113.49918 * 253.02821 * 14 13 2 36 36 H 1.08997 * 113.49209 * 23.56721 * 14 13 2 37 37 H 1.08999 * 109.50669 * 196.75698 * 16 15 14 38 38 H 1.08999 * 109.50732 * 316.89067 * 16 15 14 39 39 H 1.09001 * 109.47697 * 297.56237 * 17 16 15 40 40 H 1.09003 * 109.48684 * 177.53976 * 17 16 15 41 41 H 1.09006 * 109.43073 * 178.11677 * 18 17 16 42 42 H 1.09008 * 109.38741 * 58.25161 * 18 17 16 43 43 H 1.09002 * 109.48138 * 301.82722 * 19 18 17 44 44 H 1.09004 * 109.47950 * 181.78866 * 19 18 17 45 45 H 1.08996 * 109.50918 * 43.11564 * 20 15 14 46 46 H 1.09003 * 109.50665 * 163.25184 * 20 15 14 47 47 H 1.08001 * 119.99552 * 359.97438 * 24 23 21 48 48 H 1.07995 * 120.00103 * 180.25462 * 25 24 23 49 49 H 1.08004 * 119.99904 * 179.78978 * 26 25 24 50 50 H 1.07997 * 120.00055 * 179.97438 * 27 26 25 51 51 H 1.08009 * 120.00162 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 1 4.0790 -0.0855 0.5397 7 6 4.2302 -1.1925 2.3585 8 7 3.5762 -1.8368 3.3003 9 14 6.0919 -1.0602 2.4377 10 1 6.4695 0.1627 3.1909 11 1 6.6443 -2.2551 3.1247 12 1 6.6415 -0.9827 1.0604 13 7 2.0197 -0.6925 -1.1993 14 6 1.1254 -1.8068 -1.5688 15 6 1.2913 -1.3780 -3.0280 16 6 2.4872 -2.0128 -3.7305 17 6 2.1485 -3.4615 -4.0949 18 6 0.8994 -3.4851 -4.9775 19 6 -0.2879 -2.9042 -4.2074 20 6 0.0052 -1.4449 -3.8454 21 6 1.5785 -0.0015 -2.4264 22 1 0.6846 0.6062 -2.2853 23 6 2.6851 0.7433 -3.1275 24 6 4.0047 0.4143 -2.8798 25 6 5.0198 1.0946 -3.5263 26 6 4.7154 2.1101 -4.4133 27 6 3.3960 2.4423 -4.6575 28 6 2.3809 1.7593 -4.0142 29 1 -0.3633 -1.0120 0.1781 30 1 -0.3632 0.3518 -0.9657 31 1 -0.3633 0.6605 0.7873 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 4.0605 -2.2428 4.0362 35 1 1.5445 -2.7899 -1.3544 36 1 0.1084 -1.6901 -1.1945 37 1 2.7157 -1.4532 -4.6375 38 1 3.3505 -1.9972 -3.0652 39 1 1.9613 -4.0310 -3.1846 40 1 2.9843 -3.9053 -4.6358 41 1 0.6775 -4.5131 -5.2645 42 1 1.0776 -2.8892 -5.8727 43 1 -0.4468 -3.4801 -3.2957 44 1 -1.1825 -2.9521 -4.8285 45 1 -0.8205 -1.0427 -3.2585 46 1 0.1229 -0.8602 -4.7578 47 1 4.2425 -0.3762 -2.1834 48 1 6.0506 0.8348 -3.3358 49 1 5.5085 2.6439 -4.9158 50 1 3.1583 3.2361 -5.3502 51 1 1.3500 2.0190 -4.2047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473534534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = 44.717824 kcal Electronic energy + Delta-G solvation = -27886.246756 eV Core-core repulsion = 24557.555292 eV Total energy + Delta-G solvation = -3328.691464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36727 -38.40457 -36.89911 -33.76625 -32.05507 -30.96953 -30.81176 -30.34812 -28.67959 -27.36313 -25.44956 -24.53017 -22.87238 -22.67313 -21.94752 -21.47399 -20.23180 -18.91397 -17.82000 -16.54342 -16.21288 -15.84983 -15.31546 -14.96695 -14.61398 -14.41555 -14.27193 -14.04528 -13.57028 -13.39746 -13.14013 -12.98897 -12.76991 -12.53536 -12.45131 -12.12523 -12.01460 -11.81468 -11.65781 -11.32590 -11.15132 -11.07842 -10.87778 -10.79398 -10.72890 -10.64839 -10.53587 -10.41345 -10.03750 -9.91832 -9.75516 -9.64013 -9.19604 -8.98474 -8.58523 -8.32784 -8.23245 -7.96301 -5.87366 -3.85040 1.64064 1.74262 3.39360 3.45558 3.50045 4.04499 4.48051 4.55969 4.57858 4.82884 4.98080 5.09156 5.17130 5.24404 5.25045 5.35426 5.37603 5.43567 5.46124 5.50139 5.58177 5.62927 5.65741 5.72400 5.75545 5.82068 5.82798 5.92256 5.98573 6.00748 6.05487 6.07782 6.15128 6.19303 6.24927 6.27800 6.29586 6.40036 6.43185 6.51375 6.57659 6.59151 6.71994 6.74257 6.86431 6.92738 7.05360 7.20344 7.35137 7.60055 7.81219 7.98302 8.12870 8.59262 9.20411 9.76511 11.24739 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005520 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.599848 B = 5071.165206 C = 6193.988428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.069 0.931 4 C 0.038 3.962 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.425 5.425 14 C -0.001 4.001 15 C -0.070 4.070 16 C -0.086 4.086 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.102 4.102 21 C 0.057 3.943 22 H 0.081 0.919 23 C -0.055 4.055 24 C -0.082 4.082 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.141 0.859 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 1.897 -18.107 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.058 4.058 3 H 0.087 0.913 4 C 0.001 3.999 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.146 5.146 14 C -0.130 4.130 15 C -0.070 4.070 16 C -0.124 4.124 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.052 4.052 22 H 0.098 0.902 23 C -0.056 4.056 24 C -0.100 4.100 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.148 4.148 28 C -0.139 4.139 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.159 0.841 48 H 0.135 0.865 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.336 1.694 -17.754 18.616 hybrid contribution 0.162 0.385 0.239 0.481 sum -5.174 2.079 -17.515 18.382 Atomic orbital electron populations 1.22567 0.99374 1.01695 1.00516 1.22325 0.90519 0.99002 0.93911 0.91326 1.19042 0.96296 0.95127 0.89480 1.21142 0.91784 1.32810 1.06946 0.92272 1.24986 0.97889 0.95882 0.96031 1.69962 1.35173 1.37010 1.12327 0.86672 0.86561 0.77202 0.78031 1.21041 1.21573 1.19869 1.69184 1.41873 1.04191 0.99370 1.23965 0.97751 0.98196 0.93058 1.21609 0.95563 0.94986 0.94845 1.21216 0.97033 0.94414 0.99706 1.21548 0.97066 0.97353 0.99663 1.21496 0.95385 1.00120 0.98421 1.21497 0.97451 0.96193 1.00154 1.21419 0.96309 0.96640 0.99585 1.22441 0.94899 0.94366 0.93533 0.90184 1.19593 0.94517 0.95237 0.96255 1.21317 0.91701 0.99336 0.97636 1.21207 0.99352 0.96669 0.97336 1.21046 0.96217 0.98225 0.99257 1.20949 0.93014 1.00215 1.00671 1.20914 0.98755 0.96413 0.97867 0.92197 0.93684 0.92562 0.96559 0.96525 0.93365 0.90101 0.90486 0.92325 0.90191 0.91752 0.92372 0.92615 0.92435 0.91827 0.92555 0.92227 0.92076 0.84132 0.86538 0.86928 0.86881 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 7.74 37.16 0.29 -2.75 16 2 C 0.05 1.03 2.37 -67.72 -0.16 0.87 16 3 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 4 C 0.04 0.96 4.56 -27.88 -0.13 0.83 16 5 C -0.49 -13.66 8.84 -34.44 -0.30 -13.97 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.43 -7.75 4.53 -229.82 -1.04 -8.79 16 14 C 0.00 -0.02 6.14 -7.28 -0.04 -0.06 16 15 C -0.07 -0.93 0.74 -155.02 -0.12 -1.05 16 16 C -0.09 -1.16 3.67 -26.88 -0.10 -1.26 16 17 C -0.12 -1.40 5.87 -26.66 -0.16 -1.56 16 18 C -0.12 -1.19 5.86 -26.76 -0.16 -1.35 16 19 C -0.12 -1.19 5.87 -26.65 -0.16 -1.34 16 20 C -0.10 -1.14 5.14 -26.88 -0.14 -1.28 16 21 C 0.06 0.86 2.64 -72.34 -0.19 0.67 16 22 H 0.08 1.18 5.86 -51.92 -0.30 0.87 16 23 C -0.06 -0.85 4.49 -104.62 -0.47 -1.32 16 24 C -0.08 -1.34 7.86 -39.58 -0.31 -1.65 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 27 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 28 C -0.12 -1.63 9.74 -39.59 -0.39 -2.02 16 29 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.04 0.65 5.82 -51.93 -0.30 0.34 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.39 7.55 -51.93 -0.39 1.00 16 36 H 0.08 1.18 4.76 -51.93 -0.25 0.93 16 37 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 38 H 0.08 1.25 6.30 -51.93 -0.33 0.92 16 39 H 0.06 0.81 7.57 -51.93 -0.39 0.42 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.14 2.61 6.56 -52.49 -0.34 2.26 16 48 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 49 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 50 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 51 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -29.69 382.10 -12.31 -42.00 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.92 Total: 2.75 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -3.82 Total: -32.21 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.30 Total: -35.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.69 -12.31 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473534534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.717 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds