Wall clock time and date at job start Tue Mar 31 2020 11:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47426 * 2 1 4 4 C 1.53002 * 109.46948 * 119.99586 * 2 1 3 5 5 C 1.50699 * 109.47306 * 184.99971 * 4 2 1 6 6 H 1.08006 * 120.00079 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00254 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00360 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46829 * 89.99897 * 9 7 5 11 11 H 1.48493 * 109.47335 * 210.00083 * 9 7 5 12 12 H 1.48495 * 109.46704 * 330.00343 * 9 7 5 13 13 N 1.46892 * 109.47571 * 239.99700 * 2 1 3 14 14 C 1.47577 * 110.99890 * 325.51012 * 13 2 1 15 15 C 1.52990 * 87.79662 * 138.30016 * 14 13 2 16 16 C 1.52531 * 114.05474 * 88.12021 * 15 14 13 17 17 C 1.53178 * 109.25557 * 76.82451 * 16 15 14 18 18 C 1.52966 * 109.41649 * 57.54795 * 17 16 15 19 19 C 1.52977 * 109.72329 * 298.19859 * 18 17 16 20 20 C 1.52534 * 114.04299 * 220.50325 * 15 14 13 21 21 C 1.47576 * 111.00344 * 61.60864 * 13 2 1 22 22 H 1.09009 * 113.49523 * 336.43030 * 21 13 2 23 23 C 1.50699 * 113.49902 * 106.89434 * 21 13 2 24 24 C 1.38240 * 119.99851 * 20.22919 * 23 21 13 25 25 C 1.38238 * 120.00145 * 179.78811 * 24 23 21 26 26 C 1.38234 * 119.99546 * 0.45966 * 25 24 23 27 27 C 1.38234 * 120.00476 * 359.76933 * 26 25 24 28 28 C 1.38230 * 119.99663 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47151 * 189.98180 * 1 2 3 30 30 H 1.09005 * 109.46520 * 69.98523 * 1 2 3 31 31 H 1.08999 * 109.46857 * 309.99186 * 1 2 3 32 32 H 1.09000 * 109.47424 * 305.00240 * 4 2 1 33 33 H 1.09003 * 109.46985 * 65.00122 * 4 2 1 34 34 H 0.96999 * 120.00618 * 180.02562 * 8 7 5 35 35 H 1.08999 * 113.49918 * 253.02821 * 14 13 2 36 36 H 1.08997 * 113.49209 * 23.56721 * 14 13 2 37 37 H 1.08999 * 109.50669 * 196.75698 * 16 15 14 38 38 H 1.08999 * 109.50732 * 316.89067 * 16 15 14 39 39 H 1.09001 * 109.47697 * 297.56237 * 17 16 15 40 40 H 1.09003 * 109.48684 * 177.53976 * 17 16 15 41 41 H 1.09006 * 109.43073 * 178.11677 * 18 17 16 42 42 H 1.09008 * 109.38741 * 58.25161 * 18 17 16 43 43 H 1.09002 * 109.48138 * 301.82722 * 19 18 17 44 44 H 1.09004 * 109.47950 * 181.78866 * 19 18 17 45 45 H 1.08996 * 109.50918 * 43.11564 * 20 15 14 46 46 H 1.09003 * 109.50665 * 163.25184 * 20 15 14 47 47 H 1.08001 * 119.99552 * 359.97438 * 24 23 21 48 48 H 1.07995 * 120.00103 * 180.25462 * 25 24 23 49 49 H 1.08004 * 119.99904 * 179.78978 * 26 25 24 50 50 H 1.07997 * 120.00055 * 179.97438 * 27 26 25 51 51 H 1.08009 * 120.00162 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 1 4.0790 -0.0855 0.5397 7 6 4.2302 -1.1925 2.3585 8 7 3.5762 -1.8368 3.3003 9 14 6.0919 -1.0602 2.4377 10 1 6.4695 0.1627 3.1909 11 1 6.6443 -2.2551 3.1247 12 1 6.6415 -0.9827 1.0604 13 7 2.0197 -0.6925 -1.1993 14 6 1.1254 -1.8068 -1.5688 15 6 1.2913 -1.3780 -3.0280 16 6 2.4872 -2.0128 -3.7305 17 6 2.1485 -3.4615 -4.0949 18 6 0.8994 -3.4851 -4.9775 19 6 -0.2879 -2.9042 -4.2074 20 6 0.0052 -1.4449 -3.8454 21 6 1.5785 -0.0015 -2.4264 22 1 0.6846 0.6062 -2.2853 23 6 2.6851 0.7433 -3.1275 24 6 4.0047 0.4143 -2.8798 25 6 5.0198 1.0946 -3.5263 26 6 4.7154 2.1101 -4.4133 27 6 3.3960 2.4423 -4.6575 28 6 2.3809 1.7593 -4.0142 29 1 -0.3633 -1.0120 0.1781 30 1 -0.3632 0.3518 -0.9657 31 1 -0.3633 0.6605 0.7873 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 4.0605 -2.2428 4.0362 35 1 1.5445 -2.7899 -1.3544 36 1 0.1084 -1.6901 -1.1945 37 1 2.7157 -1.4532 -4.6375 38 1 3.3505 -1.9972 -3.0652 39 1 1.9613 -4.0310 -3.1846 40 1 2.9843 -3.9053 -4.6358 41 1 0.6775 -4.5131 -5.2645 42 1 1.0776 -2.8892 -5.8727 43 1 -0.4468 -3.4801 -3.2957 44 1 -1.1825 -2.9521 -4.8285 45 1 -0.8205 -1.0427 -3.2585 46 1 0.1229 -0.8602 -4.7578 47 1 4.2425 -0.3762 -2.1834 48 1 6.0506 0.8348 -3.3358 49 1 5.5085 2.6439 -4.9158 50 1 3.1583 3.2361 -5.3502 51 1 1.3500 2.0190 -4.2047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473534534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:36 Heat of formation + Delta-G solvation = 30.651658 kcal Electronic energy + Delta-G solvation = -27886.856710 eV Core-core repulsion = 24557.555292 eV Total energy + Delta-G solvation = -3329.301418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59828 -39.48612 -38.05285 -35.51522 -33.87824 -32.04339 -31.89687 -31.38140 -30.01429 -29.13772 -26.67094 -25.97754 -24.59457 -23.81991 -22.99553 -22.51671 -21.37377 -20.35577 -18.97387 -18.41801 -17.64632 -17.12383 -16.61136 -16.39796 -16.02660 -15.70510 -15.42634 -15.12931 -14.67683 -14.63889 -14.41958 -14.15741 -14.03304 -13.89011 -13.83577 -13.54744 -13.31724 -13.20131 -13.00361 -12.84303 -12.61548 -12.48598 -12.33306 -12.26716 -11.97354 -11.83575 -11.77771 -11.71797 -11.58246 -11.18461 -11.13205 -10.89201 -10.81027 -10.75286 -10.50892 -9.67141 -9.43283 -9.32111 -8.13222 -6.17623 0.56317 0.65376 1.36578 1.37442 1.48920 2.43505 2.93973 3.17758 3.28026 3.44437 3.80255 3.98593 4.02293 4.10785 4.17578 4.23522 4.28525 4.29305 4.32436 4.40698 4.42653 4.46619 4.50665 4.57391 4.62555 4.69825 4.77103 4.80285 4.85530 4.87975 4.96700 4.99590 5.09410 5.13554 5.19621 5.22305 5.23957 5.25071 5.32035 5.33609 5.37985 5.42765 5.47753 5.61366 5.62551 5.64393 5.69131 5.77055 5.79409 5.88006 6.00396 6.26533 6.32454 6.54191 6.95598 7.47937 8.99021 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005520 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.599848 B = 5071.165206 C = 6193.988428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.061 3.939 3 H 0.053 0.947 4 C 0.046 3.954 5 C -0.496 4.496 6 H 0.053 0.947 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.455 5.455 14 C -0.004 4.004 15 C -0.051 4.051 16 C -0.080 4.080 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.097 4.097 21 C 0.063 3.937 22 H 0.092 0.908 23 C -0.069 4.069 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.058 0.942 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.140 0.860 50 H 0.146 0.854 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 3.351 -21.207 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.048 4.048 3 H 0.071 0.929 4 C 0.009 3.991 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.176 5.176 14 C -0.132 4.132 15 C -0.051 4.051 16 C -0.118 4.118 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.047 4.047 22 H 0.109 0.891 23 C -0.070 4.070 24 C -0.123 4.123 25 C -0.160 4.160 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.123 0.877 48 H 0.138 0.862 49 H 0.157 0.843 50 H 0.164 0.836 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.213 3.152 -20.864 21.997 hybrid contribution 0.487 -0.060 1.197 1.294 sum -5.726 3.092 -19.667 20.716 Atomic orbital electron populations 1.22433 0.96351 1.01943 1.02366 1.21985 0.92894 0.97235 0.92677 0.92904 1.18864 0.95112 0.93807 0.91333 1.21428 0.93289 1.32222 1.06522 0.92907 1.25811 1.02682 0.95652 0.95771 1.70086 1.37007 1.38044 1.13004 0.85644 0.80917 0.77482 0.78207 1.20100 1.21025 1.19341 1.69118 1.43143 1.05548 0.99809 1.24004 0.97495 0.96403 0.95314 1.21500 0.96839 0.93262 0.93522 1.21111 0.96015 0.95660 0.99004 1.21539 0.98537 0.95915 0.99565 1.21471 0.94174 1.01173 0.98121 1.21506 0.98257 0.95263 1.00156 1.21422 0.94729 0.97684 0.99692 1.22483 0.95204 0.95188 0.91780 0.89053 1.19658 0.93810 0.96283 0.97244 1.21114 0.93176 0.99636 0.98419 1.21346 0.99187 0.97435 0.98023 1.21367 0.97552 0.97334 0.98356 1.21361 0.92421 1.00258 1.00286 1.21190 1.00395 0.95408 0.96995 0.92286 0.90620 0.92285 0.99259 0.99251 0.93268 0.92611 0.89476 0.91938 0.93445 0.93285 0.91874 0.91375 0.91521 0.92785 0.90378 0.91319 0.90695 0.87749 0.86247 0.84260 0.83587 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 7.74 71.98 0.56 -5.10 16 2 C 0.06 2.55 2.37 44.92 0.11 2.66 16 3 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 4 C 0.05 2.48 4.56 29.85 0.14 2.61 16 5 C -0.50 -29.13 8.84 25.60 0.23 -28.91 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -59.02 13.29 21.45 0.28 -58.73 16 9 Si 0.95 46.90 29.54 68.60 2.03 48.92 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.46 -17.26 4.53 -881.01 -3.99 -21.25 16 14 C 0.00 -0.12 6.14 83.69 0.51 0.39 16 15 C -0.05 -1.32 0.74 -52.51 -0.04 -1.36 16 16 C -0.08 -2.18 3.67 30.50 0.11 -2.07 16 17 C -0.12 -2.76 5.87 30.64 0.18 -2.58 16 18 C -0.11 -2.04 5.86 30.58 0.18 -1.86 16 19 C -0.11 -2.04 5.87 30.65 0.18 -1.86 16 20 C -0.10 -1.91 5.14 30.50 0.16 -1.75 16 21 C 0.06 1.85 2.64 41.55 0.11 1.96 16 22 H 0.09 2.47 5.86 -2.38 -0.01 2.46 16 23 C -0.07 -2.07 4.49 -19.86 -0.09 -2.16 16 24 C -0.11 -3.54 7.86 22.27 0.18 -3.37 16 25 C -0.14 -4.13 10.05 22.27 0.22 -3.90 16 26 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 27 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 28 C -0.12 -2.93 9.74 22.27 0.22 -2.71 16 29 H 0.06 1.94 6.47 -2.39 -0.02 1.92 16 30 H 0.08 2.01 5.82 -2.38 -0.01 1.99 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.06 2.07 7.55 -2.39 -0.02 2.05 16 36 H 0.09 2.65 4.76 -2.39 -0.01 2.64 16 37 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16 38 H 0.05 1.59 6.30 -2.39 -0.02 1.58 16 39 H 0.05 1.28 7.57 -2.39 -0.02 1.26 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.05 1.08 8.08 -2.39 -0.02 1.06 16 44 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.10 4.23 6.56 -2.91 -0.02 4.21 16 48 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 49 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 50 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 51 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.76 382.10 3.05 -64.71 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.88 Total: 21.36 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 3.85 Total: -55.01 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.71 Total: -79.98 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -67.76 3.05 -64.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473534534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.358 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds