Wall clock time and date at job start Tue Mar 31 2020 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 H 1.08007 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99638 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 60.00318 * 9 7 5 11 11 H 1.48503 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47732 * 300.00016 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 N 1.46898 * 109.47386 * 295.00452 * 13 2 1 15 15 C 1.48454 * 110.99834 * 285.90631 * 14 13 2 16 16 C 1.54334 * 104.58019 * 200.83055 * 15 14 13 17 17 H 1.09004 * 110.37950 * 265.78402 * 16 15 14 18 18 C 1.50700 * 110.30594 * 143.67085 * 16 15 14 19 19 C 1.38233 * 119.99449 * 303.98403 * 18 16 15 20 20 C 1.38242 * 119.99649 * 179.78840 * 19 18 16 21 21 C 1.38234 * 119.99605 * 0.46802 * 20 19 18 22 22 C 1.38230 * 120.00394 * 359.76296 * 21 20 19 23 23 C 1.38228 * 120.00203 * 124.25721 * 18 16 15 24 24 C 1.54046 * 105.16318 * 24.74203 * 16 15 14 25 25 H 1.09004 * 112.94067 * 121.53206 * 24 16 15 26 26 C 1.54673 * 108.86406 * 247.23190 * 24 16 15 27 27 C 1.54830 * 102.97102 * 149.16424 * 26 24 16 28 28 C 1.54211 * 104.19077 * 321.97872 * 27 26 24 29 29 C 1.48418 * 111.00272 * 170.00114 * 14 13 2 30 30 H 1.09001 * 111.90352 * 36.57367 * 29 14 13 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 35 35 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 36 36 H 0.97005 * 119.99650 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47196 * 55.00329 * 13 2 1 38 38 H 1.09004 * 109.46881 * 174.99844 * 13 2 1 39 39 H 1.09004 * 110.40863 * 319.60256 * 15 14 13 40 40 H 1.08994 * 110.41301 * 82.05054 * 15 14 13 41 41 H 1.07999 * 120.00526 * 0.02562 * 19 18 16 42 42 H 1.08000 * 120.00250 * 180.24800 * 20 19 18 43 43 H 1.08004 * 119.99815 * 179.79010 * 21 20 19 44 44 H 1.08000 * 120.00585 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.00058 * 359.97438 * 23 18 16 46 46 H 1.09002 * 110.71914 * 267.53496 * 26 24 16 47 47 H 1.09001 * 110.71583 * 30.61744 * 26 24 16 48 48 H 1.08998 * 110.48502 * 80.65729 * 27 26 24 49 49 H 1.09005 * 110.48933 * 203.17108 * 27 26 24 50 50 H 1.08996 * 110.00256 * 264.80521 * 28 27 26 51 51 H 1.08998 * 110.00156 * 143.44647 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9744 -2.3757 7 6 1.9934 -0.4015 -3.7283 8 7 2.6774 -1.5180 -3.8511 9 14 1.4986 0.5630 -5.2496 10 1 2.0897 1.9239 -5.1869 11 1 1.9948 -0.1362 -6.4621 12 1 0.0186 0.6686 -5.3093 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.4797 1.2605 2.5924 16 6 2.3546 1.6378 4.0836 17 1 1.5558 2.3659 4.2253 18 6 3.6605 2.1893 4.5948 19 6 4.8183 1.4430 4.4795 20 6 6.0171 1.9507 4.9445 21 6 6.0562 3.2006 5.5335 22 6 4.8976 3.9449 5.6532 23 6 3.6997 3.4391 5.1842 24 6 2.0114 0.3207 4.8051 25 1 2.7382 0.0549 5.5727 26 6 0.5713 0.4158 5.3615 27 6 0.0800 -1.0514 5.3067 28 6 0.6792 -1.6021 3.9967 29 6 1.9152 -0.7439 3.6797 30 1 2.8269 -1.3358 3.5992 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 3.1264 -0.7993 -1.2057 35 1 1.6055 -1.7197 -1.2953 36 1 2.9253 -1.8404 -4.7318 37 1 1.6055 -1.7199 1.2951 38 1 3.1264 -0.7995 1.2055 39 1 3.5186 1.0486 2.3396 40 1 2.0901 2.0610 1.9636 41 1 4.7871 0.4649 4.0226 42 1 6.9225 1.3693 4.8507 43 1 6.9922 3.5959 5.8998 44 1 4.9282 4.9217 6.1130 45 1 2.7943 4.0205 5.2779 46 1 0.5779 0.7821 6.3881 47 1 -0.0448 1.0554 4.7294 48 1 0.4554 -1.6116 6.1630 49 1 -1.0090 -1.0882 5.2755 50 1 -0.0491 -1.5194 3.1900 51 1 0.9724 -2.6434 4.1297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474508940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:02 Heat of formation + Delta-G solvation = 2.040196 kcal Electronic energy + Delta-G solvation = -26576.026565 eV Core-core repulsion = 23245.484461 eV Total energy + Delta-G solvation = -3330.542104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55835 -38.77131 -36.06355 -34.23378 -33.08952 -31.70203 -31.00691 -29.49778 -27.65245 -26.91944 -26.53961 -24.92816 -23.26825 -22.68977 -21.81314 -20.57951 -20.36193 -19.29975 -18.63854 -17.17202 -16.35567 -15.84146 -15.62027 -15.25086 -14.73741 -14.53437 -14.29602 -14.13560 -13.88759 -13.52875 -13.38132 -13.08726 -12.97141 -12.67732 -12.35337 -12.07420 -11.92946 -11.57828 -11.37530 -11.22426 -11.18334 -11.12401 -10.98961 -10.83390 -10.78668 -10.68584 -10.62071 -10.51848 -10.36242 -10.24775 -10.14667 -9.58561 -9.08490 -9.03033 -8.92472 -8.74542 -8.29705 -8.12113 -5.94750 -3.95624 1.24398 1.28903 3.36298 3.40441 3.43150 3.65586 4.15379 4.36473 4.50151 4.59081 4.73377 4.79001 4.88148 4.90678 5.01645 5.15529 5.20623 5.35743 5.40339 5.40991 5.44777 5.48107 5.56320 5.59357 5.69066 5.71179 5.80392 5.86731 5.91554 5.95259 5.98124 6.00746 6.07077 6.14333 6.20086 6.20756 6.26140 6.35120 6.39705 6.45679 6.46722 6.56806 6.59112 6.75591 6.89315 7.07212 7.12029 7.24921 7.33143 7.47499 7.72846 7.89444 8.05805 8.50235 9.10584 9.67549 11.16814 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003400 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.426146 B = 8233.709894 C = 9607.452648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.051 3.949 14 N -0.497 5.497 15 C 0.043 3.957 16 C -0.050 4.050 17 H 0.087 0.913 18 C -0.068 4.068 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.084 4.084 25 H 0.083 0.917 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.111 4.111 29 C 0.058 3.942 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.011 0.989 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 5.733 23.198 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.077 4.077 14 N -0.220 5.220 15 C -0.085 4.085 16 C -0.069 4.069 17 H 0.106 0.894 18 C -0.068 4.068 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.103 4.103 25 H 0.101 0.899 26 C -0.148 4.148 27 C -0.157 4.157 28 C -0.149 4.149 29 C -0.051 4.051 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.879 5.722 22.976 23.694 hybrid contribution 0.849 0.223 -1.001 1.332 sum 1.729 5.945 21.975 22.830 Atomic orbital electron populations 1.21567 0.95811 1.00354 1.00110 1.21140 0.95872 0.98958 0.93617 0.92827 1.19117 0.95802 0.95520 0.90543 1.21203 1.34526 1.08257 0.91003 0.92663 1.25011 0.95362 0.95089 0.99048 1.69956 1.39090 1.21289 1.23421 0.86706 0.78912 0.80125 0.82542 1.20331 1.21389 1.20262 1.22482 0.97581 0.97423 0.90217 1.65456 1.50590 1.04661 1.01335 1.23197 0.96396 0.94603 0.94329 1.21033 0.93872 0.96975 0.94993 0.89440 1.19914 0.94945 0.94279 0.97659 1.21027 0.92287 0.99989 0.99839 1.21144 0.97812 0.96055 0.98605 1.21114 0.98221 0.95067 1.00267 1.21117 0.92834 0.99711 1.00155 1.21071 0.98020 0.95441 0.98984 1.22724 0.97475 0.93466 0.96604 0.89852 1.22497 0.95173 0.97000 1.00115 1.22291 1.00166 0.95919 0.97351 1.22074 0.97192 0.97699 0.97926 1.23224 0.96804 0.94450 0.90587 0.92711 0.94351 0.93895 0.92912 0.97086 0.96682 0.93086 0.91362 0.95234 0.93549 0.89908 0.86311 0.86235 0.86387 0.86292 0.86152 0.92273 0.90698 0.92279 0.91819 0.90146 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.59 2.38 -90.62 -0.22 -1.81 16 3 H 0.05 1.14 7.25 -51.93 -0.38 0.77 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.05 0.88 4.19 -3.83 -0.02 0.87 16 14 N -0.50 -7.23 4.20 -221.37 -0.93 -8.16 16 15 C 0.04 0.59 5.33 -2.27 -0.01 0.58 16 16 C -0.05 -0.56 2.83 -90.53 -0.26 -0.82 16 17 H 0.09 0.95 7.17 -51.93 -0.37 0.58 16 18 C -0.07 -0.75 4.77 -104.63 -0.50 -1.25 16 19 C -0.11 -1.27 8.27 -39.58 -0.33 -1.60 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 21 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 22 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 23 C -0.12 -1.19 9.68 -39.59 -0.38 -1.58 16 24 C -0.08 -0.90 3.22 -88.02 -0.28 -1.18 16 25 H 0.08 0.88 7.60 -51.93 -0.39 0.48 16 26 C -0.11 -1.09 6.18 -24.89 -0.15 -1.25 16 27 C -0.12 -1.17 6.83 -25.13 -0.17 -1.34 16 28 C -0.11 -1.29 6.41 -25.69 -0.16 -1.45 16 29 C 0.06 0.72 3.10 -65.30 -0.20 0.52 16 30 H 0.05 0.71 8.00 -51.93 -0.42 0.29 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.20 7.99 -51.93 -0.42 0.79 16 38 H 0.03 0.53 7.78 -51.93 -0.40 0.13 16 39 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 40 H 0.08 1.22 7.71 -51.93 -0.40 0.82 16 41 H 0.12 1.34 7.65 -52.49 -0.40 0.94 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.04 7.97 -52.49 -0.42 0.62 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -29.88 391.14 -12.61 -42.49 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -9.23 Total: -0.82 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -4.06 Total: -29.80 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.19 Total: -34.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.88 -12.61 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474508940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.528 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds