Wall clock time and date at job start Tue Mar 31 2020 11:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 H 1.08007 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99638 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 60.00318 * 9 7 5 11 11 H 1.48503 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47732 * 300.00016 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 N 1.46898 * 109.47386 * 295.00452 * 13 2 1 15 15 C 1.48454 * 110.99834 * 285.90631 * 14 13 2 16 16 C 1.54334 * 104.58019 * 200.83055 * 15 14 13 17 17 H 1.09004 * 110.37950 * 265.78402 * 16 15 14 18 18 C 1.50700 * 110.30594 * 143.67085 * 16 15 14 19 19 C 1.38233 * 119.99449 * 303.98403 * 18 16 15 20 20 C 1.38242 * 119.99649 * 179.78840 * 19 18 16 21 21 C 1.38234 * 119.99605 * 0.46802 * 20 19 18 22 22 C 1.38230 * 120.00394 * 359.76296 * 21 20 19 23 23 C 1.38228 * 120.00203 * 124.25721 * 18 16 15 24 24 C 1.54046 * 105.16318 * 24.74203 * 16 15 14 25 25 H 1.09004 * 112.94067 * 121.53206 * 24 16 15 26 26 C 1.54673 * 108.86406 * 247.23190 * 24 16 15 27 27 C 1.54830 * 102.97102 * 149.16424 * 26 24 16 28 28 C 1.54211 * 104.19077 * 321.97872 * 27 26 24 29 29 C 1.48418 * 111.00272 * 170.00114 * 14 13 2 30 30 H 1.09001 * 111.90352 * 36.57367 * 29 14 13 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 35 35 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 36 36 H 0.97005 * 119.99650 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47196 * 55.00329 * 13 2 1 38 38 H 1.09004 * 109.46881 * 174.99844 * 13 2 1 39 39 H 1.09004 * 110.40863 * 319.60256 * 15 14 13 40 40 H 1.08994 * 110.41301 * 82.05054 * 15 14 13 41 41 H 1.07999 * 120.00526 * 0.02562 * 19 18 16 42 42 H 1.08000 * 120.00250 * 180.24800 * 20 19 18 43 43 H 1.08004 * 119.99815 * 179.79010 * 21 20 19 44 44 H 1.08000 * 120.00585 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.00058 * 359.97438 * 23 18 16 46 46 H 1.09002 * 110.71914 * 267.53496 * 26 24 16 47 47 H 1.09001 * 110.71583 * 30.61744 * 26 24 16 48 48 H 1.08998 * 110.48502 * 80.65729 * 27 26 24 49 49 H 1.09005 * 110.48933 * 203.17108 * 27 26 24 50 50 H 1.08996 * 110.00256 * 264.80521 * 28 27 26 51 51 H 1.08998 * 110.00156 * 143.44647 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9744 -2.3757 7 6 1.9934 -0.4015 -3.7283 8 7 2.6774 -1.5180 -3.8511 9 14 1.4986 0.5630 -5.2496 10 1 2.0897 1.9239 -5.1869 11 1 1.9948 -0.1362 -6.4621 12 1 0.0186 0.6686 -5.3093 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.4797 1.2605 2.5924 16 6 2.3546 1.6378 4.0836 17 1 1.5558 2.3659 4.2253 18 6 3.6605 2.1893 4.5948 19 6 4.8183 1.4430 4.4795 20 6 6.0171 1.9507 4.9445 21 6 6.0562 3.2006 5.5335 22 6 4.8976 3.9449 5.6532 23 6 3.6997 3.4391 5.1842 24 6 2.0114 0.3207 4.8051 25 1 2.7382 0.0549 5.5727 26 6 0.5713 0.4158 5.3615 27 6 0.0800 -1.0514 5.3067 28 6 0.6792 -1.6021 3.9967 29 6 1.9152 -0.7439 3.6797 30 1 2.8269 -1.3358 3.5992 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 3.1264 -0.7993 -1.2057 35 1 1.6055 -1.7197 -1.2953 36 1 2.9253 -1.8404 -4.7318 37 1 1.6055 -1.7199 1.2951 38 1 3.1264 -0.7995 1.2055 39 1 3.5186 1.0486 2.3396 40 1 2.0901 2.0610 1.9636 41 1 4.7871 0.4649 4.0226 42 1 6.9225 1.3693 4.8507 43 1 6.9922 3.5959 5.8998 44 1 4.9282 4.9217 6.1130 45 1 2.7943 4.0205 5.2779 46 1 0.5779 0.7821 6.3881 47 1 -0.0448 1.0554 4.7294 48 1 0.4554 -1.6116 6.1630 49 1 -1.0090 -1.0882 5.2755 50 1 -0.0491 -1.5194 3.1900 51 1 0.9724 -2.6434 4.1297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474508940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:01 Heat of formation + Delta-G solvation = -10.966973 kcal Electronic energy + Delta-G solvation = -26576.590599 eV Core-core repulsion = 23245.484461 eV Total energy + Delta-G solvation = -3331.106138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52841 -39.62139 -37.58960 -35.45077 -34.59974 -33.36399 -31.76579 -30.38506 -29.13097 -28.29519 -27.82389 -26.33579 -24.79248 -23.64823 -22.98088 -21.41971 -21.36941 -20.57873 -20.00879 -18.56800 -17.90004 -16.90956 -16.65544 -16.42387 -16.15017 -15.81441 -15.41376 -15.29723 -15.03039 -14.60422 -14.51593 -14.30467 -14.16848 -13.90532 -13.73174 -13.35344 -13.29281 -12.96712 -12.81193 -12.70424 -12.56395 -12.31407 -12.17598 -12.11033 -12.07741 -11.89248 -11.82132 -11.74377 -11.47212 -11.41686 -11.36811 -11.24174 -11.07044 -10.86015 -10.53859 -9.80177 -9.55985 -9.35792 -8.18176 -6.27537 0.46544 0.52263 1.38900 1.41915 1.49575 2.41196 2.87039 3.02218 3.15033 3.42072 3.66659 3.81802 3.98937 4.01889 4.11130 4.17533 4.26251 4.27676 4.32764 4.36231 4.47730 4.50440 4.54495 4.61830 4.65448 4.67166 4.78204 4.80150 4.85139 4.91329 4.92287 4.96983 5.01683 5.09645 5.15305 5.17617 5.19980 5.23872 5.27147 5.31776 5.36799 5.45875 5.49275 5.55130 5.58103 5.63937 5.64910 5.76757 5.79079 5.87632 6.05488 6.12112 6.16358 6.31380 6.87872 7.40682 8.93812 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003400 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.426146 B = 8233.709894 C = 9607.452648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 H 0.047 0.953 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.065 3.935 14 N -0.495 5.495 15 C 0.041 3.959 16 C -0.038 4.038 17 H 0.096 0.904 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.075 4.075 25 H 0.090 0.910 26 C -0.106 4.106 27 C -0.114 4.114 28 C -0.111 4.111 29 C 0.053 3.947 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.036 0.964 34 H -0.019 1.019 35 H -0.010 1.010 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.136 0.864 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 7.474 24.956 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.064 4.064 14 N -0.218 5.218 15 C -0.087 4.087 16 C -0.057 4.057 17 H 0.114 0.886 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.094 4.094 25 H 0.108 0.892 26 C -0.143 4.143 27 C -0.151 4.151 28 C -0.149 4.149 29 C -0.055 4.055 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.000 1.000 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.154 0.846 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.168 7.470 24.753 25.856 hybrid contribution 1.140 -0.333 -1.526 1.934 sum 1.309 7.137 23.227 24.334 Atomic orbital electron populations 1.21438 0.94516 1.00289 1.00371 1.20930 0.96759 0.98063 0.92819 0.93459 1.18994 0.93788 0.94680 0.92825 1.21595 1.34499 1.08577 0.92088 0.92221 1.25948 0.95212 0.96090 1.02625 1.70097 1.40211 1.22988 1.24339 0.85570 0.79010 0.78750 0.78159 1.19322 1.20905 1.19116 1.22166 0.96532 0.97208 0.90446 1.65417 1.50482 1.04883 1.01033 1.23197 0.95306 0.93849 0.96367 1.20927 0.94538 0.97427 0.92829 0.88565 1.19926 0.94569 0.94980 0.98549 1.21074 0.93117 0.99955 1.00670 1.21376 0.97902 0.96797 0.98671 1.21442 0.99369 0.94631 0.99573 1.21458 0.92422 1.00646 0.99571 1.21316 0.99141 0.95073 0.98668 1.22686 0.98501 0.92309 0.95904 0.89208 1.22477 0.93947 0.96986 1.00930 1.22275 1.00518 0.95819 0.96537 1.22072 0.96288 0.98031 0.98554 1.23333 0.97071 0.95004 0.90080 0.93445 0.94555 0.91574 0.94501 1.00029 0.99191 0.92924 0.91618 0.96531 0.94922 0.91015 0.87336 0.85111 0.84199 0.83900 0.84599 0.90428 0.91432 0.90878 0.91134 0.91874 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 2 C -0.07 -2.85 2.38 -10.79 -0.03 -2.88 16 3 H 0.05 2.07 7.25 -2.39 -0.02 2.06 16 4 C 0.03 1.88 4.45 29.85 0.13 2.02 16 5 C -0.53 -30.71 8.41 25.60 0.22 -30.49 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -58.23 13.29 21.44 0.28 -57.94 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.06 2.35 4.19 86.30 0.36 2.71 16 14 N -0.49 -14.52 4.20 -854.29 -3.59 -18.11 16 15 C 0.04 1.14 5.33 86.46 0.46 1.60 16 16 C -0.04 -0.83 2.83 -10.73 -0.03 -0.86 16 17 H 0.10 1.92 7.17 -2.38 -0.02 1.90 16 18 C -0.08 -1.70 4.77 -19.87 -0.09 -1.79 16 19 C -0.13 -2.90 8.27 22.27 0.18 -2.71 16 20 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.12 -2.28 9.68 22.27 0.22 -2.07 16 24 C -0.08 -1.51 3.22 -9.11 -0.03 -1.54 16 25 H 0.09 1.74 7.60 -2.39 -0.02 1.72 16 26 C -0.11 -1.84 6.18 31.79 0.20 -1.64 16 27 C -0.11 -1.97 6.83 31.63 0.22 -1.75 16 28 C -0.11 -2.48 6.41 31.27 0.20 -2.28 16 29 C 0.05 1.31 3.10 45.64 0.14 1.45 16 30 H 0.05 1.24 8.00 -2.39 -0.02 1.22 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 33 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 37 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 38 H 0.02 0.63 7.78 -2.38 -0.02 0.62 16 39 H 0.03 1.00 6.42 -2.39 -0.02 0.99 16 40 H 0.07 2.15 7.71 -2.39 -0.02 2.13 16 41 H 0.11 2.55 7.65 -2.91 -0.02 2.52 16 42 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 2.00 7.97 -2.91 -0.02 1.98 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.30 7.61 -2.39 -0.02 1.28 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.06 1.64 7.88 -2.39 -0.02 1.62 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.37 391.14 3.50 -61.87 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.86 Total: 16.56 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 3.92 Total: -49.65 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.31 Total: -76.05 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.37 3.50 -61.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474508940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.899 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds