Wall clock time and date at job start Tue Mar 31 2020 11:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.53003 * 109.47307 * 120.00405 * 2 1 3 5 5 C 1.50697 * 109.47157 * 183.88196 * 4 2 1 6 6 H 1.08005 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00245 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99992 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47250 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46809 * 120.00286 * 9 7 5 12 12 H 1.48496 * 109.47387 * 239.99908 * 9 7 5 13 13 N 1.46899 * 109.46719 * 240.00360 * 2 1 3 14 14 C 1.46855 * 111.00026 * 306.69842 * 13 2 1 15 15 C 1.53035 * 109.50389 * 185.78958 * 14 13 2 16 16 C 1.53104 * 109.28394 * 300.84819 * 15 14 13 17 17 C 1.53224 * 109.12816 * 57.80964 * 16 15 14 18 18 C 1.52814 * 109.31889 * 61.76295 * 17 16 15 19 19 C 1.53302 * 108.41984 * 171.25220 * 18 17 16 20 20 C 1.52751 * 108.36146 * 289.99186 * 19 18 17 21 21 C 1.50639 * 110.51101 * 51.21390 * 20 19 18 22 22 C 1.38927 * 117.71873 * 162.52637 * 21 20 19 23 23 C 1.37943 * 120.53296 * 179.53734 * 22 21 20 24 24 C 1.38268 * 119.76859 * 359.97438 * 23 22 21 25 25 C 1.37932 * 119.77924 * 0.06728 * 24 23 22 26 26 C 1.37630 * 122.59357 * 342.19997 * 21 20 19 27 27 C 1.46825 * 111.00538 * 70.93469 * 13 2 1 28 28 H 1.08993 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46548 * 299.99830 * 1 2 3 30 30 H 1.08998 * 109.47447 * 59.99693 * 1 2 3 31 31 H 1.09004 * 109.46755 * 303.88084 * 4 2 1 32 32 H 1.08991 * 109.47052 * 63.88102 * 4 2 1 33 33 H 0.97002 * 120.00314 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46259 * 305.80041 * 14 13 2 35 35 H 1.09001 * 109.46024 * 65.77868 * 14 13 2 36 36 H 1.08995 * 109.50046 * 180.90339 * 15 14 13 37 37 H 1.09000 * 109.53820 * 60.80828 * 15 14 13 38 38 H 1.08997 * 109.52510 * 297.91459 * 16 15 14 39 39 H 1.08998 * 109.52360 * 177.70832 * 16 15 14 40 40 H 1.08999 * 109.67151 * 290.98104 * 18 17 16 41 41 H 1.09001 * 109.67392 * 51.51734 * 18 17 16 42 42 H 1.08993 * 109.68444 * 170.27228 * 19 18 17 43 43 H 1.08998 * 109.71611 * 49.72429 * 19 18 17 44 44 H 1.09002 * 109.26512 * 290.95371 * 20 19 18 45 45 H 1.08997 * 109.26778 * 171.48642 * 20 19 18 46 46 H 1.07996 * 119.73199 * 359.53043 * 22 21 20 47 47 H 1.07999 * 120.11478 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.11167 * 180.02562 * 24 23 22 49 49 H 1.07994 * 119.73412 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.46287 * 294.07070 * 27 13 2 51 51 H 1.08999 * 109.45936 * 54.03160 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5440 -0.6386 1.2982 6 1 4.0823 -0.1234 0.5163 7 6 4.2329 -1.2205 2.3411 8 7 3.5775 -1.8483 3.2930 9 14 6.0971 -1.1185 2.4015 10 1 6.5901 -0.3644 1.2210 11 1 6.5146 -0.4203 3.6440 12 1 6.6686 -2.4890 2.3880 13 7 2.0196 -0.6924 -1.1995 14 6 1.4225 -2.0290 -1.3161 15 6 2.0611 -2.7731 -2.4911 16 6 1.8323 -1.9766 -3.7785 17 6 2.4251 -0.5735 -3.6128 18 6 3.9313 -0.6852 -3.3799 19 6 4.5359 0.7224 -3.4364 20 6 4.4729 1.2156 -4.8807 21 6 3.0795 1.0596 -5.4314 22 6 2.7509 1.7814 -6.5721 23 6 1.4943 1.6749 -7.1310 24 6 0.5538 0.8428 -6.5523 25 6 0.8780 0.1260 -5.4193 26 6 2.1420 0.2341 -4.8535 27 6 1.7729 0.1069 -2.4062 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6211 -0.2492 2.1379 32 1 1.7347 -1.7670 1.2150 33 1 4.0621 -2.2574 4.0269 34 1 1.5966 -2.5861 -0.3956 35 1 0.3500 -1.9341 -1.4860 36 1 1.6067 -3.7591 -2.5876 37 1 3.1314 -2.8814 -2.3156 38 1 0.7628 -1.8996 -3.9740 39 1 2.3205 -2.4825 -4.6114 40 1 4.1196 -1.1265 -2.4012 41 1 4.3774 -1.3076 -4.1557 42 1 5.5736 0.6899 -3.1044 43 1 3.9658 1.3935 -2.7941 44 1 5.1671 0.6360 -5.4893 45 1 4.7575 2.2673 -4.9144 46 1 3.4852 2.4313 -7.0247 47 1 1.2462 2.2388 -8.0181 48 1 -0.4315 0.7549 -6.9855 49 1 0.1427 -0.5233 -4.9676 50 1 0.6990 0.1906 -2.5730 51 1 2.1986 1.1018 -2.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641956025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:53 Heat of formation + Delta-G solvation = 7.357614 kcal Electronic energy + Delta-G solvation = -27883.684769 eV Core-core repulsion = 24553.373245 eV Total energy + Delta-G solvation = -3330.311524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79563 -38.48226 -36.00234 -34.42729 -32.55702 -31.76571 -30.16869 -29.87212 -28.96854 -27.26863 -25.90501 -24.10008 -23.05451 -22.73561 -22.58569 -21.94499 -19.98516 -18.77736 -17.82275 -16.58455 -16.10617 -15.58027 -15.39868 -15.14103 -14.51940 -14.32264 -14.18367 -14.04549 -13.76328 -13.54684 -13.34993 -12.95335 -12.61070 -12.48285 -12.35819 -12.15788 -11.99789 -11.82176 -11.68186 -11.41626 -11.30611 -11.13428 -11.05984 -10.87666 -10.70520 -10.49611 -10.33185 -10.31422 -10.09319 -9.86890 -9.78554 -9.71737 -9.13480 -8.91396 -8.71854 -8.49012 -8.23248 -7.37498 -5.86161 -3.83299 1.39250 1.40320 3.39190 3.47050 3.51945 3.76238 4.49103 4.58647 4.71160 4.82855 4.93628 4.97671 5.00001 5.19705 5.25226 5.35104 5.38042 5.45167 5.50821 5.55092 5.60563 5.67174 5.71140 5.79324 5.89262 5.91198 5.97879 6.02474 6.04099 6.06035 6.07295 6.11133 6.14809 6.18039 6.24903 6.28144 6.35802 6.49847 6.52112 6.56185 6.62192 6.66770 6.71227 6.79374 6.81844 6.89212 7.03645 7.06573 7.59464 7.73462 7.98052 8.08073 8.16152 8.62011 9.23146 9.78277 11.26002 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004363 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.572440 B = 6416.522517 C = 7195.993107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.504 5.504 14 C 0.056 3.944 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.011 4.011 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.056 4.056 27 C 0.071 3.929 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.023 0.977 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 3.868 -19.311 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.227 5.227 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.012 4.012 18 C -0.141 4.141 19 C -0.156 4.156 20 C -0.119 4.119 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.057 4.057 27 C -0.058 4.058 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.138 0.862 50 H 0.041 0.959 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.702 3.719 -19.097 19.805 hybrid contribution -0.016 0.175 -0.092 0.198 sum -3.718 3.894 -19.190 19.930 Atomic orbital electron populations 1.22523 0.99941 1.01279 1.00517 1.21899 0.89924 0.98238 0.91920 0.91470 1.19189 0.96405 0.95281 0.89738 1.21198 0.91589 1.33016 1.06514 0.92009 1.24991 0.97825 0.96030 0.96033 1.69973 1.34987 1.37557 1.12082 0.86623 0.86733 0.77488 0.77659 1.19728 1.21525 1.21408 1.61972 1.58147 1.01720 1.00858 1.22090 0.94828 0.91166 0.99152 1.21629 1.02475 0.97473 0.93953 1.21738 0.99922 0.94631 0.98042 1.19496 0.96941 0.93708 0.91038 1.21590 0.92589 0.96468 1.03436 1.21559 1.01365 0.97764 0.94950 1.20537 0.92807 1.01277 0.97242 1.19685 0.95925 0.96217 0.95120 1.21139 0.96785 1.00147 0.96273 1.20996 0.93928 0.99491 1.00089 1.21021 0.99250 0.97690 0.96679 1.21248 0.96438 0.99660 0.96140 1.19656 0.93123 0.96642 0.96248 1.22098 0.96787 0.96998 0.89899 0.92834 0.92689 0.94314 0.96527 0.96317 0.93463 0.89492 0.96038 0.92302 0.90601 0.92465 0.92320 0.88441 0.92953 0.91587 0.91140 0.91021 0.91275 0.86545 0.86570 0.86548 0.86238 0.95884 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.43 37.16 0.31 -2.85 16 2 C 0.09 1.76 2.26 -67.71 -0.15 1.60 16 3 H 0.07 1.38 7.97 -51.93 -0.41 0.97 16 4 C 0.03 0.77 4.37 -27.88 -0.12 0.65 16 5 C -0.48 -13.23 8.81 -34.44 -0.30 -13.53 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.50 -9.11 3.39 -226.65 -0.77 -9.88 16 14 C 0.06 0.95 4.53 -3.83 -0.02 0.93 16 15 C -0.12 -1.71 5.74 -26.66 -0.15 -1.87 16 16 C -0.11 -1.39 4.36 -26.56 -0.12 -1.51 16 17 C -0.01 -0.16 0.39 -155.57 -0.06 -0.22 16 18 C -0.10 -1.49 4.07 -26.67 -0.11 -1.60 16 19 C -0.12 -1.61 5.93 -26.70 -0.16 -1.77 16 20 C -0.08 -0.95 5.67 -28.04 -0.16 -1.10 16 21 C -0.07 -0.87 5.73 -104.62 -0.60 -1.47 16 22 C -0.13 -1.40 9.61 -39.43 -0.38 -1.77 16 23 C -0.13 -1.34 10.05 -39.68 -0.40 -1.73 16 24 C -0.13 -1.40 10.05 -39.68 -0.40 -1.80 16 25 C -0.12 -1.42 8.88 -39.44 -0.35 -1.77 16 26 C -0.06 -0.74 4.71 -104.58 -0.49 -1.23 16 27 C 0.07 1.11 3.63 -3.81 -0.01 1.09 16 28 H 0.05 0.92 6.45 -51.93 -0.34 0.58 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.49 6.30 -51.93 -0.33 0.17 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 1.72 6.18 -51.93 -0.32 1.40 16 35 H 0.02 0.35 6.57 -51.93 -0.34 0.01 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.20 6.76 -51.93 -0.35 0.85 16 38 H 0.06 0.71 6.28 -51.93 -0.33 0.39 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.67 6.20 -51.93 -0.32 1.35 16 41 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.12 1.07 8.05 -52.49 -0.42 0.65 16 47 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.37 6.29 -52.49 -0.33 1.04 16 50 H 0.02 0.36 6.81 -51.93 -0.35 0.01 16 51 H 0.07 1.15 6.31 -51.93 -0.33 0.82 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -29.00 370.75 -11.85 -40.85 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.62 Total: 1.57 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -3.77 Total: -28.62 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.03 Total: -36.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.00 -11.85 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641956025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.210 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds