Wall clock time and date at job start Tue Mar 31 2020 11:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.53003 * 109.47307 * 120.00405 * 2 1 3 5 5 C 1.50697 * 109.47157 * 183.88196 * 4 2 1 6 6 H 1.08005 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00245 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99992 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47250 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46809 * 120.00286 * 9 7 5 12 12 H 1.48496 * 109.47387 * 239.99908 * 9 7 5 13 13 N 1.46899 * 109.46719 * 240.00360 * 2 1 3 14 14 C 1.46855 * 111.00026 * 306.69842 * 13 2 1 15 15 C 1.53035 * 109.50389 * 185.78958 * 14 13 2 16 16 C 1.53104 * 109.28394 * 300.84819 * 15 14 13 17 17 C 1.53224 * 109.12816 * 57.80964 * 16 15 14 18 18 C 1.52814 * 109.31889 * 61.76295 * 17 16 15 19 19 C 1.53302 * 108.41984 * 171.25220 * 18 17 16 20 20 C 1.52751 * 108.36146 * 289.99186 * 19 18 17 21 21 C 1.50639 * 110.51101 * 51.21390 * 20 19 18 22 22 C 1.38927 * 117.71873 * 162.52637 * 21 20 19 23 23 C 1.37943 * 120.53296 * 179.53734 * 22 21 20 24 24 C 1.38268 * 119.76859 * 359.97438 * 23 22 21 25 25 C 1.37932 * 119.77924 * 0.06728 * 24 23 22 26 26 C 1.37630 * 122.59357 * 342.19997 * 21 20 19 27 27 C 1.46825 * 111.00538 * 70.93469 * 13 2 1 28 28 H 1.08993 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46548 * 299.99830 * 1 2 3 30 30 H 1.08998 * 109.47447 * 59.99693 * 1 2 3 31 31 H 1.09004 * 109.46755 * 303.88084 * 4 2 1 32 32 H 1.08991 * 109.47052 * 63.88102 * 4 2 1 33 33 H 0.97002 * 120.00314 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46259 * 305.80041 * 14 13 2 35 35 H 1.09001 * 109.46024 * 65.77868 * 14 13 2 36 36 H 1.08995 * 109.50046 * 180.90339 * 15 14 13 37 37 H 1.09000 * 109.53820 * 60.80828 * 15 14 13 38 38 H 1.08997 * 109.52510 * 297.91459 * 16 15 14 39 39 H 1.08998 * 109.52360 * 177.70832 * 16 15 14 40 40 H 1.08999 * 109.67151 * 290.98104 * 18 17 16 41 41 H 1.09001 * 109.67392 * 51.51734 * 18 17 16 42 42 H 1.08993 * 109.68444 * 170.27228 * 19 18 17 43 43 H 1.08998 * 109.71611 * 49.72429 * 19 18 17 44 44 H 1.09002 * 109.26512 * 290.95371 * 20 19 18 45 45 H 1.08997 * 109.26778 * 171.48642 * 20 19 18 46 46 H 1.07996 * 119.73199 * 359.53043 * 22 21 20 47 47 H 1.07999 * 120.11478 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.11167 * 180.02562 * 24 23 22 49 49 H 1.07994 * 119.73412 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.46287 * 294.07070 * 27 13 2 51 51 H 1.08999 * 109.45936 * 54.03160 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5440 -0.6386 1.2982 6 1 4.0823 -0.1234 0.5163 7 6 4.2329 -1.2205 2.3411 8 7 3.5775 -1.8483 3.2930 9 14 6.0971 -1.1185 2.4015 10 1 6.5901 -0.3644 1.2210 11 1 6.5146 -0.4203 3.6440 12 1 6.6686 -2.4890 2.3880 13 7 2.0196 -0.6924 -1.1995 14 6 1.4225 -2.0290 -1.3161 15 6 2.0611 -2.7731 -2.4911 16 6 1.8323 -1.9766 -3.7785 17 6 2.4251 -0.5735 -3.6128 18 6 3.9313 -0.6852 -3.3799 19 6 4.5359 0.7224 -3.4364 20 6 4.4729 1.2156 -4.8807 21 6 3.0795 1.0596 -5.4314 22 6 2.7509 1.7814 -6.5721 23 6 1.4943 1.6749 -7.1310 24 6 0.5538 0.8428 -6.5523 25 6 0.8780 0.1260 -5.4193 26 6 2.1420 0.2341 -4.8535 27 6 1.7729 0.1069 -2.4062 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6211 -0.2492 2.1379 32 1 1.7347 -1.7670 1.2150 33 1 4.0621 -2.2574 4.0269 34 1 1.5966 -2.5861 -0.3956 35 1 0.3500 -1.9341 -1.4860 36 1 1.6067 -3.7591 -2.5876 37 1 3.1314 -2.8814 -2.3156 38 1 0.7628 -1.8996 -3.9740 39 1 2.3205 -2.4825 -4.6114 40 1 4.1196 -1.1265 -2.4012 41 1 4.3774 -1.3076 -4.1557 42 1 5.5736 0.6899 -3.1044 43 1 3.9658 1.3935 -2.7941 44 1 5.1671 0.6360 -5.4893 45 1 4.7575 2.2673 -4.9144 46 1 3.4852 2.4313 -7.0247 47 1 1.2462 2.2388 -8.0181 48 1 -0.4315 0.7549 -6.9855 49 1 0.1427 -0.5233 -4.9676 50 1 0.6990 0.1906 -2.5730 51 1 2.1986 1.1018 -2.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641956025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:52 Heat of formation + Delta-G solvation = -5.268001 kcal Electronic energy + Delta-G solvation = -27884.232257 eV Core-core repulsion = 24553.373245 eV Total energy + Delta-G solvation = -3330.859012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86363 -39.66847 -37.22285 -35.65216 -34.52119 -32.92008 -31.47636 -31.02356 -30.01702 -29.11092 -27.01930 -25.65429 -24.53350 -23.98674 -23.67252 -23.03794 -21.14551 -20.16624 -18.99119 -18.30961 -17.57721 -16.78504 -16.52343 -16.35609 -16.17808 -15.67146 -15.35843 -15.15431 -15.00116 -14.65879 -14.59617 -14.20909 -13.88943 -13.86726 -13.56885 -13.46527 -13.39158 -13.13997 -13.03908 -12.93068 -12.65754 -12.53822 -12.33546 -12.32766 -12.11334 -12.02140 -11.78444 -11.65804 -11.59433 -11.14754 -11.10406 -11.02841 -10.84364 -10.73857 -10.44721 -9.57597 -9.38815 -8.80791 -8.06851 -6.10423 0.53970 0.55241 1.41469 1.43013 1.55657 2.49377 2.88967 3.15457 3.30754 3.73805 3.75632 3.84817 4.02536 4.10740 4.21336 4.24581 4.25613 4.30310 4.33226 4.44895 4.47046 4.50715 4.55511 4.59041 4.67052 4.68704 4.75620 4.79260 4.83034 4.92520 4.99341 5.03644 5.06272 5.12051 5.13988 5.17910 5.23563 5.24257 5.26404 5.29164 5.35624 5.48847 5.52670 5.58673 5.59285 5.70049 5.72965 5.78278 5.90486 5.93830 6.21528 6.37651 6.53447 6.58769 7.03556 7.55108 9.05581 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004363 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.572440 B = 6416.522517 C = 7195.993107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.058 0.942 4 C 0.039 3.961 5 C -0.489 4.489 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.518 5.518 14 C 0.060 3.940 15 C -0.112 4.112 16 C -0.099 4.099 17 C -0.004 4.004 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.075 4.075 21 C -0.084 4.084 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.073 4.073 27 C 0.078 3.922 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.060 0.940 31 H -0.012 1.012 32 H -0.003 1.003 33 H 0.257 0.743 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.124 0.876 50 H 0.029 0.971 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 4.703 -22.455 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.077 0.923 4 C 0.002 3.998 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.584 5.584 9 Si 0.778 3.222 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.150 4.150 16 C -0.136 4.136 17 C -0.005 4.005 18 C -0.138 4.138 19 C -0.156 4.156 20 C -0.112 4.112 21 C -0.084 4.084 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.074 4.074 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.006 0.994 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.154 0.846 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.142 0.858 50 H 0.047 0.953 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.804 4.562 -22.258 23.037 hybrid contribution -0.012 -0.063 0.870 0.873 sum -3.817 4.499 -21.388 22.187 Atomic orbital electron populations 1.22377 0.97561 1.01608 1.01615 1.21588 0.91793 0.96979 0.90911 0.92344 1.19021 0.95320 0.94266 0.91189 1.21475 0.92938 1.32256 1.06092 0.92345 1.25792 1.02498 0.95850 0.95798 1.70100 1.36808 1.38705 1.12819 0.85597 0.81191 0.77559 0.77895 1.18782 1.21079 1.21071 1.61855 1.58761 1.02340 1.01172 1.22016 0.95750 0.90458 0.98609 1.21580 1.01276 0.98366 0.93768 1.21695 1.00788 0.93905 0.97224 1.19379 0.96080 0.94205 0.90800 1.21497 0.93558 0.96938 1.01784 1.21515 1.00769 0.96910 0.96381 1.20488 0.93042 1.02124 0.95549 1.19845 0.96054 0.96608 0.95899 1.21398 0.97666 0.99988 0.95773 1.21358 0.93458 0.99042 1.00596 1.21326 1.00393 0.97089 0.96119 1.21367 0.96106 1.00210 0.96784 1.19581 0.94098 0.97528 0.96159 1.22060 0.97200 0.96271 0.89449 0.92851 0.92643 0.92092 0.99351 0.98456 0.93435 0.93098 0.94810 0.90485 0.92289 0.91230 0.91117 0.91740 0.92035 0.91768 0.92956 0.89931 0.90002 0.84625 0.84037 0.84397 0.85824 0.95306 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.94 8.43 71.98 0.61 -5.33 16 2 C 0.10 3.93 2.26 44.92 0.10 4.04 16 3 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 4 C 0.04 2.04 4.37 29.85 0.13 2.18 16 5 C -0.49 -27.66 8.81 25.60 0.23 -27.44 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -58.03 13.29 21.44 0.28 -57.74 16 9 Si 0.95 45.66 29.54 68.60 2.03 47.69 16 10 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.52 -19.15 3.39 -871.00 -2.95 -22.10 16 14 C 0.06 2.07 4.53 86.32 0.39 2.46 16 15 C -0.11 -3.23 5.74 30.64 0.18 -3.06 16 16 C -0.10 -2.43 4.36 30.70 0.13 -2.30 16 17 C 0.00 -0.11 0.39 -52.87 -0.02 -0.13 16 18 C -0.10 -2.88 4.07 30.63 0.12 -2.75 16 19 C -0.12 -3.16 5.93 30.61 0.18 -2.98 16 20 C -0.08 -1.60 5.67 29.75 0.17 -1.44 16 21 C -0.08 -1.91 5.73 -19.86 -0.11 -2.02 16 22 C -0.13 -2.48 9.61 22.36 0.21 -2.27 16 23 C -0.13 -2.19 10.05 22.21 0.22 -1.97 16 24 C -0.13 -2.41 10.05 22.20 0.22 -2.19 16 25 C -0.13 -2.75 8.88 22.36 0.20 -2.55 16 26 C -0.07 -1.77 4.71 -19.84 -0.09 -1.87 16 27 C 0.08 2.42 3.63 86.35 0.31 2.73 16 28 H 0.05 1.82 6.45 -2.39 -0.02 1.81 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.06 1.82 6.85 -2.39 -0.02 1.80 16 31 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 32 H 0.00 -0.16 6.30 -2.39 -0.02 -0.17 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.05 2.12 6.18 -2.39 -0.01 2.11 16 35 H 0.03 1.08 6.57 -2.39 -0.02 1.06 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.90 6.76 -2.39 -0.02 1.88 16 38 H 0.07 1.56 6.28 -2.39 -0.02 1.55 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.06 2.28 6.20 -2.39 -0.01 2.26 16 41 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.57 6.28 -2.39 -0.01 1.56 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.53 8.13 -2.39 -0.02 1.51 16 46 H 0.14 1.99 8.05 -2.91 -0.02 1.97 16 47 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 49 H 0.12 2.50 6.29 -2.91 -0.02 2.48 16 50 H 0.03 0.86 6.81 -2.38 -0.02 0.85 16 51 H 0.06 1.95 6.31 -2.39 -0.02 1.94 16 Total: -1.00 -64.04 370.75 3.90 -60.13 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.90 Total: 18.67 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.65 Total: -46.65 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.67 Total: -79.84 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.04 3.90 -60.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641956025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.865 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds