Wall clock time and date at job start Tue Mar 31 2020 10:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.53011 * 109.47189 * 240.00331 * 2 1 3 5 5 C 1.50697 * 109.47309 * 120.00737 * 2 1 3 6 6 C 1.38265 * 120.08134 * 359.97438 * 5 2 1 7 7 C 1.38016 * 119.86695 * 180.10779 * 6 5 2 8 8 C 1.38742 * 120.37486 * 0.02562 * 7 6 5 9 9 C 1.37829 * 119.72935 * 359.84615 * 8 7 6 10 10 C 1.38029 * 120.08851 * 180.02562 * 5 2 1 11 11 C 1.50718 * 121.66349 * 180.25011 * 9 8 7 12 12 C 1.52895 * 109.96508 * 343.22759 * 11 9 8 13 13 N 1.47162 * 108.51131 * 50.33069 * 12 11 9 14 14 C 1.46893 * 111.00169 * 52.12631 * 13 12 11 15 15 C 1.53004 * 109.47236 * 163.78666 * 14 13 12 16 16 C 1.50703 * 115.54703 * 304.71139 * 15 14 13 17 17 H 1.08004 * 120.00145 * 144.70517 * 16 15 14 18 18 C 1.37875 * 120.00128 * 324.70138 * 16 15 14 19 19 N 1.31523 * 120.00003 * 349.76464 * 18 16 15 20 20 Si 1.86792 * 120.00102 * 169.75944 * 18 16 15 21 21 H 1.48505 * 109.47189 * 90.00620 * 20 18 16 22 22 H 1.48509 * 109.47326 * 210.00127 * 20 18 16 23 23 H 1.48499 * 109.47323 * 330.00130 * 20 18 16 24 24 C 1.52995 * 117.50048 * 159.04166 * 15 14 13 25 25 C 1.52998 * 117.49988 * 90.38125 * 15 14 13 26 26 C 1.46634 * 110.23834 * 288.71325 * 13 12 11 27 27 H 1.09001 * 109.46840 * 299.99696 * 1 2 3 28 28 H 1.09002 * 109.46765 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47697 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47067 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47552 * 300.00588 * 3 2 1 32 32 H 1.09004 * 109.46383 * 60.00310 * 3 2 1 33 33 H 1.08998 * 109.46995 * 300.00667 * 4 2 1 34 34 H 1.09001 * 109.46407 * 59.99843 * 4 2 1 35 35 H 1.08991 * 109.46814 * 180.02562 * 4 2 1 36 36 H 1.08001 * 120.06730 * 0.08735 * 6 5 2 37 37 H 1.08001 * 119.81603 * 179.97438 * 7 6 5 38 38 H 1.08002 * 119.82441 * 359.93685 * 10 5 2 39 39 H 1.08998 * 109.38615 * 223.07205 * 11 9 8 40 40 H 1.09002 * 109.30443 * 103.32739 * 11 9 8 41 41 H 1.08999 * 109.62732 * 290.62372 * 12 11 9 42 42 H 1.08997 * 109.78824 * 170.13463 * 12 11 9 43 43 H 1.08995 * 109.47403 * 43.78607 * 14 13 12 44 44 H 1.09003 * 109.47350 * 283.78077 * 14 13 12 45 45 H 0.97001 * 120.00083 * 185.01944 * 19 18 16 46 46 H 1.09000 * 117.49788 * 359.97438 * 24 15 14 47 47 H 1.08998 * 117.50239 * 145.01991 * 24 15 14 48 48 H 1.09007 * 117.49626 * 214.98287 * 25 15 14 49 49 H 1.08995 * 117.50194 * 359.97096 * 25 15 14 50 50 H 1.09001 * 109.30688 * 172.86541 * 26 13 12 51 51 H 1.09004 * 109.30274 * 292.24523 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.1354 -1.2363 2.1418 7 6 1.6003 -1.8842 3.2682 8 6 2.9637 -2.0110 3.4921 9 6 3.8573 -1.4890 2.5818 10 6 3.3890 -0.8372 1.4508 11 6 5.3469 -1.6065 2.7788 12 6 5.6545 -1.9664 4.2326 13 7 4.8272 -3.1226 4.6128 14 6 4.9776 -4.2182 3.6460 15 6 4.4475 -5.5159 4.2592 16 6 5.0596 -5.9085 5.5792 17 1 4.4552 -6.3925 6.3321 18 6 6.3913 -5.6498 5.8256 19 7 7.1751 -5.2486 4.8486 20 14 7.0823 -5.8690 7.5472 21 1 7.5790 -7.2593 7.7079 22 1 8.2020 -4.9162 7.7563 23 1 6.0154 -5.6059 8.5460 24 6 4.0543 -6.6413 3.3003 25 6 2.9710 -5.8504 4.0379 26 6 3.4223 -2.7217 4.7384 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2495 34 1 1.6766 -0.2073 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 0.0730 -1.1399 1.9728 37 1 0.8990 -2.2943 3.9798 38 1 4.0896 -0.4267 0.7387 39 1 5.8205 -0.6560 2.5333 40 1 5.7368 -2.3851 2.1230 41 1 5.4187 -1.1196 4.8772 42 1 6.7093 -2.2215 4.3344 43 1 6.0313 -4.3390 3.3947 44 1 4.4129 -3.9860 2.7430 45 1 8.1259 -5.1367 5.0045 46 1 4.1728 -6.4571 2.2325 47 1 4.2379 -7.6657 3.6242 48 1 2.4425 -6.3547 4.8469 49 1 2.3771 -5.1457 3.4558 50 1 2.8073 -3.6079 4.8947 51 1 3.3129 -2.0555 5.5942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644478564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:19 Heat of formation + Delta-G solvation = 43.724790 kcal Electronic energy + Delta-G solvation = -27443.127024 eV Core-core repulsion = 24114.392499 eV Total energy + Delta-G solvation = -3328.734525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29456 -38.28438 -36.31617 -34.86285 -32.22283 -31.96360 -29.98848 -28.98706 -27.35752 -27.25305 -26.30980 -25.19874 -23.47125 -22.49208 -21.82761 -21.04493 -20.04601 -18.93564 -17.88699 -16.40774 -16.02798 -15.41730 -14.73816 -14.57903 -14.53193 -14.38867 -13.96891 -13.95346 -13.71997 -13.56804 -13.13161 -12.89092 -12.77772 -12.48625 -12.20829 -12.00742 -11.82593 -11.74863 -11.56436 -11.42087 -11.33751 -11.05022 -10.93863 -10.87192 -10.77138 -10.70504 -10.47265 -10.38320 -10.35862 -10.09086 -9.85560 -9.19906 -8.92753 -8.55939 -8.41691 -8.04875 -7.89952 -7.15924 -5.84439 -3.86039 1.64684 1.67651 3.37880 3.45192 3.50610 3.98418 4.52277 4.55172 4.68054 4.86657 4.90060 5.11780 5.21521 5.22509 5.26239 5.32144 5.43273 5.48912 5.54649 5.63136 5.65001 5.69319 5.72514 5.74709 5.76438 5.83956 5.89790 5.94547 6.03282 6.14697 6.16075 6.19578 6.22489 6.32223 6.34182 6.40245 6.49037 6.53749 6.64422 6.70067 6.75376 6.80430 6.83531 6.88319 7.02756 7.09158 7.25487 7.33744 7.41432 7.66066 8.07597 8.22256 8.28672 8.63603 9.07327 9.73402 11.17511 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.003772 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.673080 B = 7421.497549 C = 7782.361208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.128 4.128 7 C -0.116 4.116 8 C -0.099 4.099 9 C -0.068 4.068 10 C -0.117 4.117 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.486 5.486 14 C 0.101 3.899 15 C 0.070 3.930 16 C -0.472 4.472 17 H 0.053 0.947 18 C 0.089 3.911 19 N -0.879 5.879 20 Si 0.890 3.110 21 H -0.287 1.287 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.208 4.208 25 C -0.219 4.219 26 C 0.084 3.916 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.116 0.884 44 H -0.006 1.006 45 H 0.256 0.744 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 12.237 -9.049 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.082 4.082 6 C -0.146 4.146 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.069 4.069 10 C -0.135 4.135 11 C -0.156 4.156 12 C -0.070 4.070 13 N -0.205 5.205 14 C -0.026 4.026 15 C 0.069 3.931 16 C -0.509 4.509 17 H 0.071 0.929 18 C -0.114 4.114 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.246 4.246 25 C -0.256 4.256 26 C -0.045 4.045 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.012 0.988 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.497 12.171 -8.571 17.140 hybrid contribution -0.069 0.087 -0.037 0.117 sum -8.566 12.257 -8.608 17.255 Atomic orbital electron populations 1.21940 0.94456 1.01919 1.01585 1.19441 0.95415 0.94861 0.92962 1.21874 1.01172 0.94823 1.01508 1.21885 1.01227 1.00326 0.96065 1.19586 0.93291 0.99481 0.95835 1.20999 0.99164 0.99651 0.94786 1.21087 0.95091 0.99654 0.97619 1.20718 0.93160 0.97966 0.98289 1.19600 0.95630 0.97367 0.94258 1.20825 0.94755 1.00597 0.97280 1.21174 0.91619 1.01747 1.01107 1.22156 0.99578 0.93469 0.91782 1.62339 1.03860 1.05680 1.48627 1.21788 1.03428 0.88522 0.88865 1.18953 0.88761 0.90762 0.94635 1.20305 0.94716 1.37988 0.97901 0.92910 1.24722 0.96835 0.93734 0.96106 1.69777 1.04028 1.46860 1.31014 0.86650 0.78576 0.77254 0.85669 1.21348 1.21324 1.20006 1.22949 1.06681 0.98600 0.96410 1.22940 0.94461 1.05041 1.03189 1.21311 0.91983 0.98814 0.92384 0.92365 0.92691 0.92297 0.92500 0.92664 0.92618 0.92500 0.92659 0.92464 0.86320 0.86466 0.86918 0.91461 0.90319 0.92181 0.89932 0.86646 0.98764 0.93369 0.92201 0.90584 0.91020 0.91854 0.88768 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.13 37.16 0.27 -1.04 16 2 C -0.03 -0.28 0.85 -155.66 -0.13 -0.41 16 3 C -0.14 -1.29 8.29 37.16 0.31 -0.99 16 4 C -0.14 -1.39 8.29 37.16 0.31 -1.08 16 5 C -0.08 -1.09 4.75 -104.69 -0.50 -1.59 16 6 C -0.13 -1.75 8.98 -39.65 -0.36 -2.11 16 7 C -0.12 -1.77 9.65 -39.48 -0.38 -2.15 16 8 C -0.10 -1.70 5.11 -104.62 -0.53 -2.23 16 9 C -0.07 -1.13 5.08 -104.60 -0.53 -1.66 16 10 C -0.12 -1.69 8.34 -39.49 -0.33 -2.02 16 11 C -0.12 -1.93 5.18 -27.93 -0.14 -2.07 16 12 C 0.06 1.09 5.97 -3.73 -0.02 1.06 16 13 N -0.49 -10.24 4.62 -236.19 -1.09 -11.33 16 14 C 0.10 2.31 2.84 -3.83 -0.01 2.30 16 15 C 0.07 1.71 1.65 -155.66 -0.26 1.45 16 16 C -0.47 -12.72 8.75 -34.44 -0.30 -13.02 16 17 H 0.05 1.45 7.84 -52.48 -0.41 1.04 16 18 C 0.09 2.36 5.20 -17.82 -0.09 2.27 16 19 N -0.88 -23.58 10.72 55.43 0.59 -22.98 16 20 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.21 -4.83 9.96 -26.70 -0.27 -5.09 16 25 C -0.22 -4.84 8.34 -26.70 -0.22 -5.06 16 26 C 0.08 1.58 5.44 -5.16 -0.03 1.55 16 27 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 30 H 0.06 0.55 7.39 -51.93 -0.38 0.16 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 36 H 0.12 1.37 5.92 -52.49 -0.31 1.06 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.47 7.09 -52.49 -0.37 1.10 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 41 H 0.06 1.02 8.05 -51.93 -0.42 0.61 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.12 2.93 5.78 -51.93 -0.30 2.63 16 44 H -0.01 -0.13 6.12 -51.93 -0.32 -0.45 16 45 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 48 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 49 H 0.06 1.33 7.81 -51.93 -0.41 0.92 16 50 H 0.09 1.88 5.59 -51.93 -0.29 1.59 16 51 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -27.32 383.13 -11.93 -39.25 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.96 Total: 5.03 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -3.23 Total: -31.89 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.50 Total: -34.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.32 -11.93 -39.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644478564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds